Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012885.1

Orthogroup ID

OG0010858

Physical Location & Seq

Genomic Coordinates Forward (+)

1700 .. 2980

Gene Structure 1281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012885.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgcgaacaggtctgtgggattttgaattttcgtggggcgagtcggggaaggcggtatatactaggaaacccaatgatcaatccaggttggggatcggctgcacagctaaaccagagagtgactgttggagtgacgatagtgacagcgttaagaaatctgtttcttttagcaatactacttccagcacatatgctacttcagatgattctgtttctaccagtgaccatgagattgaggccgattgccttcaccacctgtattgccagtacaacgaaacatctggtcctcatgatagagttcctttgaccctcaagatcaatgaattagctcaaatttatcctggtttgatggagtttcaaagcttggagctctctccttatagctggatggctgttgcttggtatcctatctatcaaattccagttacaaggaatgtgaaggaattatctgcatgtttcatcacttatcacacattatcatcttttcaaggtataatggctactatttcttcgtcttccttgtttggtagctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF789

Protein Analysis

178

Amino Acids

19.98

Weight (kDa)

4.86

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03610 AT1G03610 AT4G28150 AT4G28150 AT4G28150
prunus_persica	Prupe.1G352500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0447281
rosa_laevigata	RLG00000005590
rosa_multiflora	Rmu_sc0012885.1_g000001 Rmu_ssc0000396.1_g000005
rosa_roxburghii	Rroxscaffold_5G00387660
rosa_rugosa	Rorug04G0379500 Rorug04G0379600 Rorug04G0379600
rosa_samantha	Rh4AG440800 Rh4BG449900 Rh4CG467000 Rh4DG448300 Rh7BG155300
rosa_wichuraiana	Rw4G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	53
AclWI	GGATC	1 cut(s)	101
AcsI	RAATTY	3 cut(s)	26, 333, 417
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	90
AgsI	TTSAA	3 cut(s)	26, 359, 488
AjnI	CCWGG	2 cut(s)	83, 340
AluBI	AGCT	6 cut(s)	107, 329, 363, 370, 384, 531
AluI	AGCT	6 cut(s)	107, 329, 363, 370, 384, 531
Alw21I	GWGCWC	1 cut(s)	372
AlwI	GGATC	1 cut(s)	101
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	99
ApoI	RAATTY	3 cut(s)	26, 333, 417
AspS9I	GGNCC	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	507
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	2 cut(s)	343, 382
BciT130I	CCWGG	2 cut(s)	85, 342
BciVI	GTATCC	1 cut(s)	414
BclI	TGATCA	1 cut(s)	76
BfaI	CTAG	1 cut(s)	63
BfuI	GTATCC	1 cut(s)	414
BisI	GCNGC	1 cut(s)	100
BlsI	GCNGC	1 cut(s)	101
Bme1390I	CCNGG	2 cut(s)	85, 342
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	284
BmrFI	CCNGG	2 cut(s)	85, 342
BpiI	GAAGAC	1 cut(s)	507
BpuEI	CTTGAG	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
Bse1I	ACTGG	3 cut(s)	219, 265, 422
BseBI	CCWGG	2 cut(s)	85, 342
BseGI	GGATG	1 cut(s)	393
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseNI	ACTGG	3 cut(s)	219, 265, 422
BseXI	GCAGC	1 cut(s)	86
BsgI	GTGCAG	1 cut(s)	85
BshFI	GGCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	372
BslI	CCNNNNNNNGG	1 cut(s)	90
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	3 cut(s)	76, 93, 315
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	1 cut(s)	239
BspHI	TCATGA	1 cut(s)	289
BspPI	GGATC	1 cut(s)	101
BsrI	ACTGG	3 cut(s)	219, 265, 422
BssMI	GATC	3 cut(s)	76, 93, 315
Bst2UI	CCWGG	2 cut(s)	85, 342
Bst4CI	ACNGT	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	393
BstKTI	GATC	3 cut(s)	79, 96, 318
BstMBI	GATC	3 cut(s)	76, 93, 315
BstNI	CCWGG	2 cut(s)	85, 342
BstNSI	RCATGY	1 cut(s)	456
BstSCI	CCNGG	2 cut(s)	83, 340
BstV1I	GCAGC	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	507
BsuI	GTATCC	1 cut(s)	414
BsuRI	GGCC	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	393
BtsIMutI	CAGTG	1 cut(s)	226
CciI	TCATGA	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	268
CspCI	CAANNNNNGTGG	2 cut(s)	242, 277
CviAII	CATG	3 cut(s)	227, 290, 453
CviQI	GTAC	1 cut(s)	268
DpnI	GATC	3 cut(s)	78, 95, 317
DpnII	GATC	3 cut(s)	76, 93, 315
Ecl136II	GAGCTC	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	284
Eco53kI	GAGCTC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	370
EcoRII	CCWGG	2 cut(s)	83, 340
EcoT38I	GRGCYC	1 cut(s)	372
FaeI	CATG	3 cut(s)	230, 293, 456
FaiI	YATR	9 cut(s)	58, 60, 190, 192, 228, 291, 381, 454, 494
FatI	CATG	3 cut(s)	226, 289, 452
FauNDI	CATATG	1 cut(s)	190
FbaI	TGATCA	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	100
FokI	GGATG	1 cut(s)	400
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	1 cut(s)	100
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	1 cut(s)	100
HaeIII	GGCC	1 cut(s)	239
Hin1II	CATG	3 cut(s)	230, 293, 456
HindIII	AAGCTT	1 cut(s)	361
HinfI	GANTC	2 cut(s)	41, 206
HphI	GGTGA	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	2 cut(s)	290, 313
HpyAV	CCTTC	3 cut(s)	43, 257, 433
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4V	TGCA	2 cut(s)	102, 452
Hsp92II	CATG	3 cut(s)	230, 293, 456
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	3 cut(s)	76, 93, 315
LmnI	GCTCC	1 cut(s)	367
Lsp1109I	GCAGC	1 cut(s)	86
MaeI	CTAG	1 cut(s)	63
MaeIII	GTNAC	5 cut(s)	119, 131, 140, 221, 424
MalI	GATC	3 cut(s)	78, 95, 317
MboI	GATC	3 cut(s)	76, 93, 315
MboII	GAAGA	2 cut(s)	501, 507
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	5 cut(s)	26, 323, 333, 417, 443
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	3 cut(s)	229, 297, 320
MseI	TTAA	1 cut(s)	150
MspR9I	CCNGG	2 cut(s)	85, 342
MvaI	CCWGG	2 cut(s)	85, 342
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	3 cut(s)	76, 93, 315
NlaIII	CATG	3 cut(s)	230, 293, 456
NmuCI	GTSAC	4 cut(s)	119, 131, 140, 221
NspI	RCATGY	1 cut(s)	456
PagI	TCATGA	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	101
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Psp124BI	GAGCTC	1 cut(s)	372
Psp6I	CCWGG	2 cut(s)	83, 340
PspGI	CCWGG	2 cut(s)	83, 340
PspPI	GGNCC	1 cut(s)	284
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SacI	GAGCTC	1 cut(s)	372
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	1 cut(s)	100
Sau3AI	GATC	3 cut(s)	76, 93, 315
Sau96I	GGNCC	1 cut(s)	284
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	85, 342
SduI	GDGCHC	1 cut(s)	372
SinI	GGWCC	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	5 cut(s)	26, 323, 333, 417, 443
SsiI	CCGC	1 cut(s)	53
SspMI	CTAG	1 cut(s)	63
SstI	GAGCTC	1 cut(s)	372
StyD4I	CCNGG	2 cut(s)	83, 340
TaaI	ACNGT	1 cut(s)	125
TasI	AATT	5 cut(s)	26, 323, 333, 417, 443
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	4 cut(s)	119, 131, 140, 221
TseI	GCWGC	1 cut(s)	99
Tsp45I	GTSAC	4 cut(s)	119, 131, 140, 221
TspDTI	ATGAA	2 cut(s)	336, 448
TspRI	CASTG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	284
XapI	RAATTY	3 cut(s)	26, 333, 417
XceI	RCATGY	1 cut(s)	456
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.