Rroxscaffold_5G00387660

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0010858
Physical Location & Seq
Forward (+)
66279701 .. 66283632
3932 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00387660.1

Sequence Viewer

Length: 270 bp
ATGAAGTTTCAAAGCTTGGAGCTCTCTCCTTATAGCTGGATGGCTGTTGCTTGGTATCCTATCTATCAAATTCCAGTTACAAGGAATGTGAAGGAATTATCTGCATGTTTCATCACTTATCACAAATTATCATCTTTTCAAGCATATGATGCAAATTTATTGGCAACAGTTTCAGATGCTCATAACATGGGAGGTTTACCAGGTCTATTGTCTCCTTGTATGATGCAAGGTGTGCCCTTGAGAGTTTACCAACATAAGATAGCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

89

Amino Acids

10.04

Weight (kDa)

8.51

Isoelectric Point (pI)

61.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 2 - 48 1.2e-22 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 69, 154
AgsI TTSAA 2 cut(s) 11, 140
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 4 cut(s) 15, 22, 36, 263
AluI AGCT 4 cut(s) 15, 22, 36, 263
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 1 cut(s) 216
ApoI RAATTY 2 cut(s) 69, 154
BaeGI GKGCMC 1 cut(s) 237
BanII GRGCYC 1 cut(s) 24
Bbv12I GWGCWC 1 cut(s) 24
BccI CCATC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 201
BciVI GTATCC 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 216
BfuI GTATCC 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 201
BmsI GCATC 3 cut(s) 139, 166, 213
BpuEI CTTGAG 1 cut(s) 259
Bse1I ACTGG 1 cut(s) 74
BseBI CCWGG 1 cut(s) 201
BseGI GGATG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 74
BseSI GKGCMC 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 216
Bsp1286I GDGCHC 2 cut(s) 24, 237
BsrI ACTGG 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 169
BstAPI GCANNNNNTGC 2 cut(s) 149, 232
BstF5I GGATG 1 cut(s) 45
BstMAI GTCTC 1 cut(s) 216
BstMWI GCNNNNNNNGC 2 cut(s) 149, 232
BstNI CCWGG 1 cut(s) 201
BstNSI RCATGY 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 199
BstSLI GKGCMC 1 cut(s) 237
BsuI GTATCC 1 cut(s) 66
BtsCI GGATG 1 cut(s) 45
CsiI ACCWGGT 1 cut(s) 199
CviAII CATG 2 cut(s) 105, 187
CviJI RGCY 5 cut(s) 15, 22, 36, 44, 263
CviKI_1 RGCY 5 cut(s) 15, 22, 36, 44, 263
Ecl136II GAGCTC 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 24
Eco53kI GAGCTC 1 cut(s) 22
EcoICRI GAGCTC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 24
FaeI CATG 2 cut(s) 108, 190
FaiI YATR 8 cut(s) 33, 106, 145, 147, 183, 188, 221, 255
FatI CATG 2 cut(s) 104, 186
FauNDI CATATG 1 cut(s) 145
FokI GGATG 1 cut(s) 52
FriOI GRGCYC 1 cut(s) 24
Hin1II CATG 2 cut(s) 108, 190
HindIII AAGCTT 1 cut(s) 13
Hpy166II GTNNAC 2 cut(s) 197, 247
Hpy188I TCNGA 1 cut(s) 175
Hpy8I GTNNAC 2 cut(s) 197, 247
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 3 cut(s) 104, 152, 226
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 232
Hsp92II CATG 2 cut(s) 108, 190
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 4 cut(s) 22, 87, 186, 213
LweI GCATC 3 cut(s) 139, 166, 213
MabI ACCWGGT 1 cut(s) 199
MaeIII GTNAC 1 cut(s) 76
MhlI GDGCHC 2 cut(s) 24, 237
MluCI AATT 4 cut(s) 69, 95, 125, 154
MnlI CCTC 1 cut(s) 185
MseI TTAA 1 cut(s) 268
MspR9I CCNGG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 149, 232
NdeI CATATG 1 cut(s) 145
NlaIII CATG 2 cut(s) 108, 190
NspI RCATGY 1 cut(s) 108
Psp124BI GAGCTC 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
SacI GAGCTC 1 cut(s) 24
SaqAI TTAA 1 cut(s) 268
ScrFI CCNGG 1 cut(s) 201
SduI GDGCHC 2 cut(s) 24, 237
SetI ASST 7 cut(s) 17, 24, 38, 196, 205, 232, 265
SexAI ACCWGGT 1 cut(s) 199
SfaNI GCATC 3 cut(s) 139, 166, 213
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
Sse9I AATT 4 cut(s) 69, 95, 125, 154
SstI GAGCTC 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 199
TaaI ACNGT 1 cut(s) 169
TasI AATT 4 cut(s) 69, 95, 125, 154
Tru1I TTAA 1 cut(s) 268
Tru9I TTAA 1 cut(s) 268
TspDTI ATGAA 2 cut(s) 17, 100
XapI RAATTY 2 cut(s) 69, 154
XceI RCATGY 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.