Rw4G037720

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0010858
Physical Location & Seq
Forward (+)
64204773 .. 64209227
4455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G037720.1

Sequence Viewer

Length: 771 bp
ATGCGAACAGGTCTGTGGGATTTTGAATTTTCGTGGGGCGAGTCGGGGAAGGCGGTATATACTAGGAAACCCAATGATCAATCCAGGTTGGGGATCGGCTGCACAGCTAAACCAGAGAGTGACTGTTGGAGTGACGATAGTGACAGCGTTAAGAAATCTGTTTCTTTTAGCAATACTACTGCCAGCACATATGCTACTTCAGATGATTCTGTTTCTACCAGTGACCATGAGATTGAGGCCGATTGCCTTCACCACCTGTATTGCCAGTACAACGAAACATCTGGTCCTCATGATAGAGTTCCTTTGACCCTCAAGATCAATGAATTAGCTCAAATTTATCCTGGTTTGATGGAGTTTCAAAGCTTGGAGCTCTCTCCTTATAGCTGGATGGCTGTTGCTTGGTATCCTATCTATCAAATTCCAGTTACAAGGAATGTGAAGGAATTATCTGCATGTTTCATCACTTATCACACATTATCATCTTTTCAAGGCCTCCATAGTACCATATCAGAGAATAATGATAAGTTTCAATGCACTGATACATTGGGAAAGGATCATGGAGGCAAGACGCTAGAAAGAGATGAAAGCAAAGGTGAAATGGCTCTTCCTCCTTTTGCAGCGGCCACCTATAAGATGCATCGCGAACTTTGGACAACTCCTGAGACTTCGGATAAGGAAAAGATTGGCTTTTATCTGAACGCTGTAAATTCCTGGATGAAGCATCGCAAATTCCAGCATCATGACTTTATTTTCTTCATATCTCGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

256

Amino Acids

29.3

Weight (kDa)

5.75

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 36 - 252 4.6e-57 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 756
AccII CGCG 1 cut(s) 642
AciI CCGC 2 cut(s) 53, 620
AclWI GGATC 2 cut(s) 101, 561
AcoI YGGCCR 1 cut(s) 621
AcsI RAATTY 5 cut(s) 26, 333, 417, 706, 728
AcuI CTGAAG 1 cut(s) 183
AfaI GTAC 2 cut(s) 269, 502
AfiI CCNNNNNNNGG 1 cut(s) 90
AgsI TTSAA 4 cut(s) 26, 359, 488, 530
AjnI CCWGG 3 cut(s) 83, 340, 710
AluBI AGCT 5 cut(s) 107, 329, 363, 370, 384
AluI AGCT 5 cut(s) 107, 329, 363, 370, 384
Alw21I GWGCWC 1 cut(s) 372
Alw26I GTCTC 1 cut(s) 656
AlwI GGATC 2 cut(s) 101, 561
AoxI GGCC 3 cut(s) 237, 490, 621
ApeKI GCWGC 2 cut(s) 99, 617
ApoI RAATTY 5 cut(s) 26, 333, 417, 706, 728
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 2 cut(s) 242, 605
AvaII GGWCC 1 cut(s) 284
BanII GRGCYC 1 cut(s) 372
Bbv12I GWGCWC 1 cut(s) 372
BbvI GCAGC 2 cut(s) 86, 629
BccI CCATC 2 cut(s) 343, 382
BciT130I CCWGG 3 cut(s) 85, 342, 712
BciVI GTATCC 1 cut(s) 414
BclI TGATCA 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 656
BfaI CTAG 2 cut(s) 63, 572
BfuAI ACCTGC 1 cut(s) 756
BfuI GTATCC 1 cut(s) 414
BisI GCNGC 3 cut(s) 100, 618, 621
BlsI GCNGC 3 cut(s) 101, 619, 622
Bme1390I CCNGG 3 cut(s) 85, 342, 712
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 284
BmrFI CCNGG 3 cut(s) 85, 342, 712
BmsI GCATC 4 cut(s) 624, 646, 730, 745
BpuEI CTTGAG 1 cut(s) 296
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse1I ACTGG 3 cut(s) 219, 265, 422
BseBI CCWGG 3 cut(s) 85, 342, 712
BseGI GGATG 2 cut(s) 393, 720
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 651
BseNI ACTGG 3 cut(s) 219, 265, 422
BseXI GCAGC 2 cut(s) 86, 629
BsgI GTGCAG 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 642
BshFI GGCC 3 cut(s) 239, 492, 623
BsiHKAI GWGCWC 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 656
BsnI GGCC 3 cut(s) 239, 492, 623
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 4 cut(s) 76, 93, 315, 553
Bsp68I TCGCGA 1 cut(s) 642
BspACI CCGC 2 cut(s) 53, 620
BspANI GGCC 3 cut(s) 239, 492, 623
BspCNI CTCAG 1 cut(s) 652
BspFNI CGCG 1 cut(s) 642
BspHI TCATGA 2 cut(s) 289, 739
BspMI ACCTGC 1 cut(s) 756
BspPI GGATC 2 cut(s) 101, 561
BspQI GCTCTTC 1 cut(s) 609
BsrI ACTGG 3 cut(s) 219, 265, 422
BssMI GATC 4 cut(s) 76, 93, 315, 553
Bst2UI CCWGG 3 cut(s) 85, 342, 712
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 609
BstC8I GCNNGC 1 cut(s) 184
BstDEI CTNAG 1 cut(s) 660
BstF5I GGATG 2 cut(s) 393, 720
BstFNI CGCG 1 cut(s) 642
BstKTI GATC 4 cut(s) 79, 96, 318, 556
BstMAI GTCTC 1 cut(s) 656
BstMBI GATC 4 cut(s) 76, 93, 315, 553
BstNI CCWGG 3 cut(s) 85, 342, 712
BstNSI RCATGY 1 cut(s) 456
BstSCI CCNGG 3 cut(s) 83, 340, 710
BstUI CGCG 1 cut(s) 642
BstV1I GCAGC 2 cut(s) 86, 629
BsuI GTATCC 1 cut(s) 414
BsuRI GGCC 3 cut(s) 239, 492, 623
BtgZI GCGATG 2 cut(s) 623, 707
BtsCI GGATG 2 cut(s) 393, 720
BtsIMutI CAGTG 2 cut(s) 226, 534
BtuMI TCGCGA 1 cut(s) 642
BveI ACCTGC 1 cut(s) 756
Cac8I GCNNGC 1 cut(s) 184
CciI TCATGA 2 cut(s) 289, 739
Cfr13I GGNCC 1 cut(s) 284
CseI GACGC 1 cut(s) 577
Csp6I GTAC 2 cut(s) 268, 501
CspCI CAANNNNNGTGG 2 cut(s) 242, 277
CviAII CATG 5 cut(s) 227, 290, 453, 557, 740
CviQI GTAC 2 cut(s) 268, 501
DdeI CTNAG 1 cut(s) 660
DpnI GATC 4 cut(s) 78, 95, 317, 555
DpnII GATC 4 cut(s) 76, 93, 315, 553
EaeI YGGCCR 1 cut(s) 621
Eam1104I CTCTTC 1 cut(s) 609
EarI CTCTTC 1 cut(s) 609
Ecl136II GAGCTC 1 cut(s) 370
Eco147I AGGCCT 1 cut(s) 492
Eco24I GRGCYC 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 284
Eco53kI GAGCTC 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 370
EcoRII CCWGG 3 cut(s) 83, 340, 710
EcoT22I ATGCAT 1 cut(s) 639
EcoT38I GRGCYC 1 cut(s) 372
FaeI CATG 5 cut(s) 230, 293, 456, 560, 743
FalI AAGNNNNNCTT 2 cut(s) 671, 703
FatI CATG 5 cut(s) 226, 289, 452, 556, 739
FauNDI CATATG 1 cut(s) 190
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 3 cut(s) 100, 618, 621
FokI GGATG 2 cut(s) 400, 727
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 3 cut(s) 100, 618, 621
FspBI CTAG 2 cut(s) 63, 572
GluI GCNGC 3 cut(s) 100, 618, 621
HaeIII GGCC 3 cut(s) 239, 492, 623
HgaI GACGC 1 cut(s) 577
Hin1II CATG 5 cut(s) 230, 293, 456, 560, 743
HindIII AAGCTT 1 cut(s) 361
HinfI GANTC 2 cut(s) 41, 206
HphI GGTGA 2 cut(s) 242, 605
Hpy188I TCNGA 4 cut(s) 202, 511, 670, 696
Hpy188III TCNNGA 5 cut(s) 290, 313, 641, 659, 740
HpyAV CCTTC 3 cut(s) 43, 257, 433
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 5 cut(s) 102, 452, 534, 617, 637
HpyF3I CTNAG 1 cut(s) 660
Hsp92II CATG 5 cut(s) 230, 293, 456, 560, 743
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 4 cut(s) 76, 93, 315, 553
LguI GCTCTTC 1 cut(s) 609
LmnI GCTCC 1 cut(s) 367
Lsp1109I GCAGC 2 cut(s) 86, 629
LweI GCATC 4 cut(s) 624, 646, 730, 745
MaeI CTAG 2 cut(s) 63, 572
MaeIII GTNAC 5 cut(s) 119, 131, 140, 221, 424
MalI GATC 4 cut(s) 78, 95, 317, 555
MboI GATC 4 cut(s) 76, 93, 315, 553
MboII GAAGA 2 cut(s) 596, 745
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 7 cut(s) 26, 323, 333, 417, 443, 706, 728
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 6 cut(s) 229, 297, 320, 503, 554, 618
Mph1103I ATGCAT 1 cut(s) 639
MseI TTAA 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 620
MspR9I CCNGG 3 cut(s) 85, 342, 712
MvaI CCWGG 3 cut(s) 85, 342, 712
MvnI CGCG 1 cut(s) 642
NdeI CATATG 1 cut(s) 190
NdeII GATC 4 cut(s) 76, 93, 315, 553
NlaIII CATG 5 cut(s) 230, 293, 456, 560, 743
NmuCI GTSAC 4 cut(s) 119, 131, 140, 221
NruI TCGCGA 1 cut(s) 642
NsiI ATGCAT 1 cut(s) 639
NspI RCATGY 1 cut(s) 456
PagI TCATGA 2 cut(s) 289, 739
PceI AGGCCT 1 cut(s) 492
PciSI GCTCTTC 1 cut(s) 609
PfeI GAWTC 1 cut(s) 206
PfoI TCCNGGA 1 cut(s) 710
PkrI GCNGC 3 cut(s) 101, 619, 622
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 372
Psp6I CCWGG 3 cut(s) 83, 340, 710
PspGI CCWGG 3 cut(s) 83, 340, 710
PspPI GGNCC 1 cut(s) 284
RruI TCGCGA 1 cut(s) 642
RsaI GTAC 2 cut(s) 269, 502
RsaNI GTAC 2 cut(s) 268, 501
SacI GAGCTC 1 cut(s) 372
SapI GCTCTTC 1 cut(s) 609
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 3 cut(s) 100, 618, 621
Sau3AI GATC 4 cut(s) 76, 93, 315, 553
Sau96I GGNCC 1 cut(s) 284
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 3 cut(s) 85, 342, 712
SduI GDGCHC 1 cut(s) 372
SfaNI GCATC 4 cut(s) 624, 646, 730, 745
SinI GGWCC 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 7 cut(s) 26, 323, 333, 417, 443, 706, 728
SseBI AGGCCT 1 cut(s) 492
SsiI CCGC 2 cut(s) 53, 620
SspMI CTAG 2 cut(s) 63, 572
SstI GAGCTC 1 cut(s) 372
StuI AGGCCT 1 cut(s) 492
StyD4I CCNGG 3 cut(s) 83, 340, 710
TaaI ACNGT 1 cut(s) 125
TasI AATT 7 cut(s) 26, 323, 333, 417, 443, 706, 728
TatI WGTACW 1 cut(s) 267
TauI GCSGC 1 cut(s) 623
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 2 cut(s) 226, 541
TseFI GTSAC 4 cut(s) 119, 131, 140, 221
TseI GCWGC 2 cut(s) 99, 617
Tsp45I GTSAC 4 cut(s) 119, 131, 140, 221
TspDTI ATGAA 5 cut(s) 336, 448, 597, 731, 745
TspRI CASTG 2 cut(s) 226, 541
VpaK11BI GGWCC 1 cut(s) 284
XapI RAATTY 5 cut(s) 26, 333, 417, 706, 728
XceI RCATGY 1 cut(s) 456
XspI CTAG 2 cut(s) 63, 572
Zsp2I ATGCAT 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.