Rh4CG467000

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0010858
Physical Location & Seq
Forward (+)
69638092 .. 69646221
8130 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG467000.1

Sequence Viewer

Length: 744 bp
ATGATCAATCCAGCTAAACCAGAGAGTGACTGTTGGAGTGACGATAGTGACAGCGATAAGAAATCTGTTTGTTTTAGCAATACTACTGCCAGCACATATGCTACTTCAGATGATTCTGTTTCTACCAGTGACCATGAGATTGAGGCCGATTGCCTTCACCACCTGTATTGCCACTACAACGAAACATCTAGTCCTCATGATAGAGTTCCTTTGACCCTCAAGATCAATGAATTAGCTCAAATTTATCCTGGTTTGATGGAGTTCCAAAGCTTGGAGCTCTCTCCTTATAGCTGGATGGCTGTTGCTTGGTATCCTATCTATCAAATTCCAGTTACAAGGAATGTGAAGGAATTATCTGCATGTTTCATCACTTATCACACATTATCATCTTTTCAAGGCCTCCATAGTACCATATCAGAGAATAATGATAAGTTTCAATGCATTGATACATTGGGAAAGGATCATGGGGGCAAGACGCTAGAAAGAGATGAAAGCAAAGGTGAAATGGCTCTTCCTCCTTTTGCAGCGGCCACCTATAAGATGCATGGCGAACTTTGGACAACTCCTGAGACTTCGGATAAGGAAAAGATTGGCTTTTATCTGAACGCTGCAAATTCCTGGTTGAAGCATCGCAAATTCCAGCATCATGACTTTAATTTCTTCATATCTCGTAGATCTCCATCTCCACGGCCGTTGAGTATGAGTTATGACCGGCGGCTCAGCTCAGCTCGCTGGTTGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

247

Amino Acids

28.28

Weight (kDa)

5.81

Isoelectric Point (pI)

57.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 7 - 221 4.6e-60 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 271
AciI CCGC 2 cut(s) 527, 715
AclWI GGATC 1 cut(s) 468
AcoI YGGCCR 2 cut(s) 528, 689
AcsI RAATTY 4 cut(s) 240, 324, 613, 635
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 1 cut(s) 409
AfiI CCNNNNNNNGG 1 cut(s) 271
AgsI TTSAA 3 cut(s) 395, 437, 625
AjnI CCWGG 2 cut(s) 247, 617
AluBI AGCT 7 cut(s) 14, 236, 270, 277, 291, 723, 728
AluI AGCT 7 cut(s) 14, 236, 270, 277, 291, 723, 728
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 1 cut(s) 563
AlwI GGATC 1 cut(s) 468
AoxI GGCC 4 cut(s) 144, 397, 528, 689
ApeKI GCWGC 2 cut(s) 524, 608
ApoI RAATTY 4 cut(s) 240, 324, 613, 635
AsuHPI GGTGA 2 cut(s) 149, 512
BanII GRGCYC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 2 cut(s) 536, 595
BccI CCATC 3 cut(s) 250, 289, 688
BceAI ACGGC 2 cut(s) 676, 704
BciT130I CCWGG 2 cut(s) 249, 619
BciVI GTATCC 1 cut(s) 321
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 563
BfaI CTAG 3 cut(s) 189, 479, 742
BfuI GTATCC 1 cut(s) 321
BglII AGATCT 1 cut(s) 674
BisI GCNGC 4 cut(s) 525, 528, 609, 716
BlpI GCTNAGC 2 cut(s) 719, 724
BlsI GCNGC 4 cut(s) 526, 529, 610, 717
Bme1390I CCNGG 2 cut(s) 249, 619
BmrFI CCNGG 2 cut(s) 249, 619
BmsI GCATC 3 cut(s) 531, 637, 652
Bpu1102I GCTNAGC 2 cut(s) 719, 724
BpuEI CTTGAG 1 cut(s) 203
BsaBI GATNNNNATC 1 cut(s) 679
BsaJI CCNNGG 1 cut(s) 686
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse118I RCCGGY 1 cut(s) 711
Bse1I ACTGG 2 cut(s) 126, 329
Bse8I GATNNNNATC 1 cut(s) 679
BseBI CCWGG 2 cut(s) 249, 619
BseDI CCNNGG 1 cut(s) 686
BseGI GGATG 1 cut(s) 300
BseJI GATNNNNATC 1 cut(s) 679
BseLI CCNNNNNNNGG 1 cut(s) 271
BseMII CTCAG 3 cut(s) 558, 733, 738
BseNI ACTGG 2 cut(s) 126, 329
BseX3I CGGCCG 1 cut(s) 689
BseXI GCAGC 2 cut(s) 536, 595
Bsh1285I CGRYCG 1 cut(s) 692
BshFI GGCC 4 cut(s) 146, 399, 530, 691
BsiEI CGRYCG 1 cut(s) 692
BsiHKAI GWGCWC 1 cut(s) 279
BsiSI CCGG 1 cut(s) 712
BslI CCNNNNNNNGG 1 cut(s) 271
BsmAI GTCTC 1 cut(s) 563
BsnI GGCC 4 cut(s) 146, 399, 530, 691
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 5 cut(s) 3, 222, 460, 674, 738
Bsp1720I GCTNAGC 2 cut(s) 719, 724
BspACI CCGC 2 cut(s) 527, 715
BspANI GGCC 4 cut(s) 146, 399, 530, 691
BspCNI CTCAG 3 cut(s) 559, 732, 737
BspHI TCATGA 2 cut(s) 196, 646
BspPI GGATC 1 cut(s) 468
BspQI GCTCTTC 1 cut(s) 516
BsrFI RCCGGY 1 cut(s) 711
BsrI ACTGG 2 cut(s) 126, 329
BssAI RCCGGY 1 cut(s) 711
BssECI CCNNGG 1 cut(s) 686
BssMI GATC 5 cut(s) 3, 222, 460, 674, 738
Bst2UI CCWGG 2 cut(s) 249, 619
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 516
BstC8I GCNNGC 2 cut(s) 91, 730
BstDEI CTNAG 3 cut(s) 567, 719, 724
BstDSI CCRYGG 1 cut(s) 686
BstF5I GGATG 1 cut(s) 300
BstKTI GATC 5 cut(s) 6, 225, 463, 677, 741
BstMAI GTCTC 1 cut(s) 563
BstMBI GATC 5 cut(s) 3, 222, 460, 674, 738
BstMCI CGRYCG 1 cut(s) 692
BstMWI GCNNNNNNNGC 1 cut(s) 729
BstNI CCWGG 2 cut(s) 249, 619
BstNSI RCATGY 1 cut(s) 363
BstSCI CCNGG 2 cut(s) 247, 617
BstV1I GCAGC 2 cut(s) 536, 595
BstX2I RGATCY 1 cut(s) 674
BstYI RGATCY 1 cut(s) 674
BstZI CGGCCG 1 cut(s) 689
BsuI GTATCC 1 cut(s) 321
BsuRI GGCC 4 cut(s) 146, 399, 530, 691
BtgI CCRYGG 1 cut(s) 686
BtgZI GCGATG 1 cut(s) 614
BtsCI GGATG 1 cut(s) 300
BtsIMutI CAGTG 1 cut(s) 133
Cac8I GCNNGC 2 cut(s) 91, 730
CciI TCATGA 2 cut(s) 196, 646
Cfr10I RCCGGY 1 cut(s) 711
CseI GACGC 1 cut(s) 484
Csp6I GTAC 1 cut(s) 408
CspCI CAANNNNNGTGG 4 cut(s) 149, 184, 675, 710
CviAII CATG 6 cut(s) 134, 197, 360, 464, 545, 647
CviQI GTAC 1 cut(s) 408
DdeI CTNAG 3 cut(s) 567, 719, 724
DpnI GATC 5 cut(s) 5, 224, 462, 676, 740
DpnII GATC 5 cut(s) 3, 222, 460, 674, 738
EaeI YGGCCR 2 cut(s) 528, 689
EagI CGGCCG 1 cut(s) 689
Eam1104I CTCTTC 1 cut(s) 516
EarI CTCTTC 1 cut(s) 516
Ecl136II GAGCTC 1 cut(s) 277
EclXI CGGCCG 1 cut(s) 689
Eco147I AGGCCT 1 cut(s) 399
Eco24I GRGCYC 1 cut(s) 279
Eco52I CGGCCG 1 cut(s) 689
Eco53kI GAGCTC 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 90
EcoICRI GAGCTC 1 cut(s) 277
EcoRII CCWGG 2 cut(s) 247, 617
EcoT22I ATGCAT 2 cut(s) 443, 546
EcoT38I GRGCYC 1 cut(s) 279
FaeI CATG 6 cut(s) 137, 200, 363, 467, 548, 650
FalI AAGNNNNNCTT 2 cut(s) 578, 610
FatI CATG 6 cut(s) 133, 196, 359, 463, 544, 646
FauNDI CATATG 1 cut(s) 97
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 4 cut(s) 525, 528, 609, 716
FokI GGATG 1 cut(s) 307
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 4 cut(s) 525, 528, 609, 716
FspBI CTAG 3 cut(s) 189, 479, 742
GluI GCNGC 4 cut(s) 525, 528, 609, 716
HaeIII GGCC 4 cut(s) 146, 399, 530, 691
HapII CCGG 1 cut(s) 712
HgaI GACGC 1 cut(s) 484
Hin1II CATG 6 cut(s) 137, 200, 363, 467, 548, 650
HindIII AAGCTT 1 cut(s) 268
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 712
HphI GGTGA 2 cut(s) 149, 512
Hpy188I TCNGA 4 cut(s) 109, 418, 577, 603
Hpy188III TCNNGA 4 cut(s) 197, 220, 566, 647
HpyAV CCTTC 2 cut(s) 164, 340
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 5 cut(s) 359, 441, 524, 544, 611
HpyF10VI GCNNNNNNNGC 1 cut(s) 729
HpyF3I CTNAG 3 cut(s) 567, 719, 724
Hsp92II CATG 6 cut(s) 137, 200, 363, 467, 548, 650
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 5 cut(s) 3, 222, 460, 674, 738
LguI GCTCTTC 1 cut(s) 516
LmnI GCTCC 1 cut(s) 274
Lsp1109I GCAGC 2 cut(s) 536, 595
LweI GCATC 3 cut(s) 531, 637, 652
MaeI CTAG 3 cut(s) 189, 479, 742
MaeIII GTNAC 5 cut(s) 26, 38, 47, 128, 331
MalI GATC 5 cut(s) 5, 224, 462, 676, 740
MboI GATC 5 cut(s) 3, 222, 460, 674, 738
MboII GAAGA 2 cut(s) 503, 652
MflI RGATCY 1 cut(s) 674
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 7 cut(s) 230, 240, 324, 350, 613, 635, 655
MmeI TCCRAC 1 cut(s) 14
MnlI CCTC 5 cut(s) 136, 204, 227, 410, 525
Mph1103I ATGCAT 2 cut(s) 443, 546
MseI TTAA 1 cut(s) 654
MspA1I CMGCKG 1 cut(s) 527
MspI CCGG 1 cut(s) 712
MspR9I CCNGG 2 cut(s) 249, 619
MvaI CCWGG 2 cut(s) 249, 619
MwoI GCNNNNNNNGC 1 cut(s) 729
NdeI CATATG 1 cut(s) 97
NdeII GATC 5 cut(s) 3, 222, 460, 674, 738
NlaIII CATG 6 cut(s) 137, 200, 363, 467, 548, 650
NmuCI GTSAC 4 cut(s) 26, 38, 47, 128
NsiI ATGCAT 2 cut(s) 443, 546
NspI RCATGY 1 cut(s) 363
PagI TCATGA 2 cut(s) 196, 646
PceI AGGCCT 1 cut(s) 399
PciSI GCTCTTC 1 cut(s) 516
PfeI GAWTC 1 cut(s) 113
PflMI CCANNNNNTGG 1 cut(s) 271
PkrI GCNGC 4 cut(s) 526, 529, 610, 717
Psp124BI GAGCTC 1 cut(s) 279
Psp6I CCWGG 2 cut(s) 247, 617
PspGI CCWGG 2 cut(s) 247, 617
PsuI RGATCY 1 cut(s) 674
RsaI GTAC 1 cut(s) 409
RsaNI GTAC 1 cut(s) 408
SacI GAGCTC 1 cut(s) 279
SapI GCTCTTC 1 cut(s) 516
SaqAI TTAA 1 cut(s) 654
SatI GCNGC 4 cut(s) 525, 528, 609, 716
Sau3AI GATC 5 cut(s) 3, 222, 460, 674, 738
ScrFI CCNGG 2 cut(s) 249, 619
SduI GDGCHC 1 cut(s) 279
SfaNI GCATC 3 cut(s) 531, 637, 652
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 7 cut(s) 230, 240, 324, 350, 613, 635, 655
SseBI AGGCCT 1 cut(s) 399
SsiI CCGC 2 cut(s) 527, 715
SspMI CTAG 3 cut(s) 189, 479, 742
SstI GAGCTC 1 cut(s) 279
StuI AGGCCT 1 cut(s) 399
StyD4I CCNGG 2 cut(s) 247, 617
TaaI ACNGT 1 cut(s) 32
TasI AATT 7 cut(s) 230, 240, 324, 350, 613, 635, 655
TauI GCSGC 2 cut(s) 530, 718
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 654
Tru9I TTAA 1 cut(s) 654
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 4 cut(s) 26, 38, 47, 128
TseI GCWGC 2 cut(s) 524, 608
Tsp45I GTSAC 4 cut(s) 26, 38, 47, 128
TspDTI ATGAA 4 cut(s) 243, 355, 504, 652
TspRI CASTG 1 cut(s) 133
Van91I CCANNNNNTGG 1 cut(s) 271
XapI RAATTY 4 cut(s) 240, 324, 613, 635
XceI RCATGY 1 cut(s) 363
XspI CTAG 3 cut(s) 189, 479, 742
Zsp2I ATGCAT 2 cut(s) 443, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.