RLG00000005590

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0010858
Physical Location & Seq
Reverse (-)
116940 .. 123746
6807 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005590

Sequence Viewer

Length: 957 bp
ATGAAGGCAACGACGCCTGAATCTGATCAGCCAAGGCAAAATGGGTTTCGGCAGATCTTCTCCCTAAGTGACCTGTGGAGAGTTTACAATGAGTGGAGTTGCTTTGGCGCTGGCGTCCCTATTCTCTTGAACAGCGGCGATAGTGTCTTGCAATACTATGCTCCATCCTTATCAGCTCTCCAAATATATACTAGGAAACCCAATGATCAATCCTGGTTGGGGATCGGCTGCACAGCTAAACCAGAGAGTGACTGTTGGAGTGACGGCGATAAGAAATCTGTTTCTTTTAGCAATACTACTGCCAGCACATATGCTACTTCAGATGATTCTGTTTCTACCAGTGACCATGAGATTGAGGCCGATTGCCTTCACCACCTGTATTGCCACTACAACGAAACATCTAGTTCTCATGATAGAGTTCCTTTGACCCTCAAGATCAATGAATTAGCTCAAATTTATCCTGGTTTGATGAAGTTTCAAAGCTTGGAGCTCTCTCCTTATAGCTGGATGGCTGTTGCTTGGTATCCTATCTATCAAATTCCAGTTACAAGGAATGTGAAGGAATTATCTGCATGTTTCATCACTTATCACACATTATCATCTTTTCAAGGCCTCCATAGTACCATATCAGAGAATAATGATAAGTTTCAATGCATTGATACATTGGGAAAGGATCATGGAGGCAAGACGCTAGAAAGAGATGAAAGCAAAGGTGAAATGGCTCTTCCTCCTTTTGCAGCGGCCACCTATAAGATGCATGGCGAACTTTGGACAACTCCTGAGACTTCGGATAAGGAAAAGATTGGCTTTTATCTGAACGCTGCAAATTCCTGGTTGAAGCATCGCAAATTCCAGCATCATGACTTTAATTTCTTCCTATCTCGTAGATCTCCATCTCCACGGCCGTTGAATATGATTTATGACCGGCGGCTCAGCTCAGCTCGCTGGTTGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

319

Amino Acids

36.27

Weight (kDa)

6.3

Isoelectric Point (pI)

53.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 11 - 292 6.9e-79 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 135, 740, 928
AclWI GGATC 2 cut(s) 230, 681
AcoI YGGCCR 2 cut(s) 741, 902
AcsI RAATTY 4 cut(s) 453, 537, 826, 848
AcuI CTGAAG 1 cut(s) 303
AcyI GRCGYC 2 cut(s) 14, 114
AfaI GTAC 1 cut(s) 622
AfiI CCNNNNNNNGG 1 cut(s) 219
AgsI TTSAA 6 cut(s) 130, 479, 608, 650, 838, 910
AjnI CCWGG 3 cut(s) 212, 460, 830
AluBI AGCT 8 cut(s) 176, 236, 449, 483, 490, 504, 936, 941
AluI AGCT 8 cut(s) 176, 236, 449, 483, 490, 504, 936, 941
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 1 cut(s) 776
AlwI GGATC 2 cut(s) 230, 681
AoxI GGCC 4 cut(s) 357, 610, 741, 902
ApeKI GCWGC 3 cut(s) 228, 737, 821
ApoI RAATTY 4 cut(s) 453, 537, 826, 848
AspLEI GCGC 1 cut(s) 110
AsuHPI GGTGA 2 cut(s) 362, 725
BanII GRGCYC 1 cut(s) 492
Bbv12I GWGCWC 1 cut(s) 492
BbvI GCAGC 3 cut(s) 215, 749, 808
BccI CCATC 3 cut(s) 172, 502, 901
BceAI ACGGC 3 cut(s) 280, 889, 917
BciT130I CCWGG 3 cut(s) 214, 462, 832
BciVI GTATCC 1 cut(s) 534
BclI TGATCA 2 cut(s) 25, 205
BcoDI GTCTC 1 cut(s) 776
BfaI CTAG 4 cut(s) 192, 402, 692, 955
BfoI RGCGCY 1 cut(s) 111
BfuI GTATCC 1 cut(s) 534
BglII AGATCT 2 cut(s) 54, 887
BisI GCNGC 6 cut(s) 136, 229, 738, 741, 822, 929
BlpI GCTNAGC 2 cut(s) 932, 937
BlsI GCNGC 6 cut(s) 137, 230, 739, 742, 823, 930
Bme1390I CCNGG 3 cut(s) 214, 462, 832
BmrFI CCNGG 3 cut(s) 214, 462, 832
BmsI GCATC 3 cut(s) 744, 850, 865
Bpu1102I GCTNAGC 2 cut(s) 932, 937
BpuEI CTTGAG 1 cut(s) 416
BsaBI GATNNNNATC 1 cut(s) 892
BsaHI GRCGYC 2 cut(s) 14, 114
BsaJI CCNNGG 2 cut(s) 32, 899
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse118I RCCGGY 1 cut(s) 924
Bse1I ACTGG 2 cut(s) 339, 542
Bse8I GATNNNNATC 1 cut(s) 892
BseBI CCWGG 3 cut(s) 214, 462, 832
BseDI CCNNGG 2 cut(s) 32, 899
BseGI GGATG 2 cut(s) 164, 513
BseJI GATNNNNATC 1 cut(s) 892
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMII CTCAG 3 cut(s) 771, 946, 951
BseNI ACTGG 2 cut(s) 339, 542
BseX3I CGGCCG 1 cut(s) 902
BseXI GCAGC 3 cut(s) 215, 749, 808
BsgI GTGCAG 1 cut(s) 214
Bsh1285I CGRYCG 1 cut(s) 905
BshFI GGCC 4 cut(s) 359, 612, 743, 904
BsiEI CGRYCG 1 cut(s) 905
BsiHKAI GWGCWC 1 cut(s) 492
BsiSI CCGG 1 cut(s) 925
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 219
BsmAI GTCTC 1 cut(s) 776
BsmFI GGGAC 1 cut(s) 101
BsnI GGCC 4 cut(s) 359, 612, 743, 904
Bsp1286I GDGCHC 1 cut(s) 492
Bsp143I GATC 8 cut(s) 25, 54, 205, 222, 435, 673, 887, 951
Bsp1720I GCTNAGC 2 cut(s) 932, 937
BspACI CCGC 3 cut(s) 135, 740, 928
BspANI GGCC 4 cut(s) 359, 612, 743, 904
BspCNI CTCAG 3 cut(s) 772, 945, 950
BspHI TCATGA 2 cut(s) 409, 859
BspPI GGATC 2 cut(s) 230, 681
BspQI GCTCTTC 1 cut(s) 729
BsrFI RCCGGY 1 cut(s) 924
BsrI ACTGG 2 cut(s) 339, 542
BssAI RCCGGY 1 cut(s) 924
BssECI CCNNGG 2 cut(s) 32, 899
BssMI GATC 8 cut(s) 25, 54, 205, 222, 435, 673, 887, 951
BssNI GRCGYC 2 cut(s) 14, 114
BssT1I CCWWGG 1 cut(s) 32
Bst2UI CCWGG 3 cut(s) 214, 462, 832
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 1 cut(s) 729
BstACI GRCGYC 2 cut(s) 14, 114
BstC8I GCNNGC 3 cut(s) 112, 304, 943
BstDEI CTNAG 4 cut(s) 65, 780, 932, 937
BstDSI CCRYGG 1 cut(s) 899
BstF5I GGATG 2 cut(s) 164, 513
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 8 cut(s) 28, 57, 208, 225, 438, 676, 890, 954
BstMAI GTCTC 1 cut(s) 776
BstMBI GATC 8 cut(s) 25, 54, 205, 222, 435, 673, 887, 951
BstMCI CGRYCG 1 cut(s) 905
BstMWI GCNNNNNNNGC 1 cut(s) 942
BstNI CCWGG 3 cut(s) 214, 462, 832
BstNSI RCATGY 1 cut(s) 576
BstSCI CCNGG 3 cut(s) 212, 460, 830
BstV1I GCAGC 3 cut(s) 215, 749, 808
BstX2I RGATCY 2 cut(s) 54, 887
BstYI RGATCY 2 cut(s) 54, 887
BstZI CGGCCG 1 cut(s) 902
BsuI GTATCC 1 cut(s) 534
BsuRI GGCC 4 cut(s) 359, 612, 743, 904
BtgI CCRYGG 1 cut(s) 899
BtgZI GCGATG 1 cut(s) 827
BtsCI GGATG 2 cut(s) 164, 513
BtsIMutI CAGTG 1 cut(s) 346
Cac8I GCNNGC 3 cut(s) 112, 304, 943
CciI TCATGA 2 cut(s) 409, 859
CfoI GCGC 1 cut(s) 110
Cfr10I RCCGGY 1 cut(s) 924
CseI GACGC 3 cut(s) 22, 103, 697
Csp6I GTAC 1 cut(s) 621
CspCI CAANNNNNGTGG 4 cut(s) 362, 397, 888, 923
CviAII CATG 6 cut(s) 347, 410, 573, 677, 758, 860
CviQI GTAC 1 cut(s) 621
DdeI CTNAG 4 cut(s) 65, 780, 932, 937
DpnI GATC 8 cut(s) 27, 56, 207, 224, 437, 675, 889, 953
DpnII GATC 8 cut(s) 25, 54, 205, 222, 435, 673, 887, 951
EaeI YGGCCR 2 cut(s) 741, 902
EagI CGGCCG 1 cut(s) 902
Eam1104I CTCTTC 1 cut(s) 729
EarI CTCTTC 1 cut(s) 729
Ecl136II GAGCTC 1 cut(s) 490
EclXI CGGCCG 1 cut(s) 902
Eco130I CCWWGG 1 cut(s) 32
Eco147I AGGCCT 1 cut(s) 612
Eco24I GRGCYC 1 cut(s) 492
Eco52I CGGCCG 1 cut(s) 902
Eco53kI GAGCTC 1 cut(s) 490
Eco57I CTGAAG 1 cut(s) 303
EcoICRI GAGCTC 1 cut(s) 490
EcoRII CCWGG 3 cut(s) 212, 460, 830
EcoT14I CCWWGG 1 cut(s) 32
EcoT22I ATGCAT 2 cut(s) 656, 759
EcoT38I GRGCYC 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 6 cut(s) 350, 413, 576, 680, 761, 863
FalI AAGNNNNNCTT 2 cut(s) 791, 823
FaqI GGGAC 1 cut(s) 101
FatI CATG 6 cut(s) 346, 409, 572, 676, 757, 859
FauNDI CATATG 1 cut(s) 310
FbaI TGATCA 2 cut(s) 25, 205
Fnu4HI GCNGC 6 cut(s) 136, 229, 738, 741, 822, 929
FokI GGATG 2 cut(s) 151, 520
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 6 cut(s) 136, 229, 738, 741, 822, 929
FspBI CTAG 4 cut(s) 192, 402, 692, 955
GlaI GCGC 1 cut(s) 109
GluI GCNGC 6 cut(s) 136, 229, 738, 741, 822, 929
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 4 cut(s) 359, 612, 743, 904
HapII CCGG 1 cut(s) 925
HgaI GACGC 3 cut(s) 22, 103, 697
HhaI GCGC 1 cut(s) 110
Hin1I GRCGYC 2 cut(s) 14, 114
Hin1II CATG 6 cut(s) 350, 413, 576, 680, 761, 863
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HindIII AAGCTT 1 cut(s) 481
HinfI GANTC 2 cut(s) 20, 326
HpaII CCGG 1 cut(s) 925
HphI GGTGA 2 cut(s) 362, 725
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 5 cut(s) 25, 322, 631, 790, 816
Hpy188III TCNNGA 5 cut(s) 127, 410, 433, 779, 860
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 2 cut(s) 377, 553
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4V TGCA 7 cut(s) 151, 231, 572, 654, 737, 757, 824
HpyF10VI GCNNNNNNNGC 1 cut(s) 942
HpyF3I CTNAG 4 cut(s) 65, 780, 932, 937
Hsp92I GRCGYC 2 cut(s) 14, 114
Hsp92II CATG 6 cut(s) 350, 413, 576, 680, 761, 863
HspAI GCGC 1 cut(s) 108
Ksp22I TGATCA 2 cut(s) 25, 205
Kzo9I GATC 8 cut(s) 25, 54, 205, 222, 435, 673, 887, 951
LguI GCTCTTC 1 cut(s) 729
LmnI GCTCC 2 cut(s) 166, 487
Lsp1109I GCAGC 3 cut(s) 215, 749, 808
LweI GCATC 3 cut(s) 744, 850, 865
MaeI CTAG 4 cut(s) 192, 402, 692, 955
MaeIII GTNAC 5 cut(s) 68, 248, 260, 341, 544
MalI GATC 8 cut(s) 27, 56, 207, 224, 437, 675, 889, 953
MboI GATC 8 cut(s) 25, 54, 205, 222, 435, 673, 887, 951
MboII GAAGA 3 cut(s) 49, 716, 865
MflI RGATCY 2 cut(s) 54, 887
MhlI GDGCHC 1 cut(s) 492
MluCI AATT 7 cut(s) 443, 453, 537, 563, 826, 848, 868
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 5 cut(s) 349, 440, 623, 674, 738
Mph1103I ATGCAT 2 cut(s) 656, 759
MseI TTAA 1 cut(s) 867
MspA1I CMGCKG 2 cut(s) 135, 740
MspI CCGG 1 cut(s) 925
MspR9I CCNGG 3 cut(s) 214, 462, 832
MvaI CCWGG 3 cut(s) 214, 462, 832
MwoI GCNNNNNNNGC 1 cut(s) 942
NdeI CATATG 1 cut(s) 310
NdeII GATC 8 cut(s) 25, 54, 205, 222, 435, 673, 887, 951
NlaIII CATG 6 cut(s) 350, 413, 576, 680, 761, 863
NmuCI GTSAC 4 cut(s) 68, 248, 260, 341
NsiI ATGCAT 2 cut(s) 656, 759
NspI RCATGY 1 cut(s) 576
PagI TCATGA 2 cut(s) 409, 859
PceI AGGCCT 1 cut(s) 612
PciSI GCTCTTC 1 cut(s) 729
PfeI GAWTC 2 cut(s) 20, 326
PkrI GCNGC 6 cut(s) 137, 230, 739, 742, 823, 930
Psp124BI GAGCTC 1 cut(s) 492
Psp6I CCWGG 3 cut(s) 212, 460, 830
PspGI CCWGG 3 cut(s) 212, 460, 830
PsuI RGATCY 2 cut(s) 54, 887
RsaI GTAC 1 cut(s) 622
RsaNI GTAC 1 cut(s) 621
SacI GAGCTC 1 cut(s) 492
SapI GCTCTTC 1 cut(s) 729
SaqAI TTAA 1 cut(s) 867
SatI GCNGC 6 cut(s) 136, 229, 738, 741, 822, 929
Sau3AI GATC 8 cut(s) 25, 54, 205, 222, 435, 673, 887, 951
ScrFI CCNGG 3 cut(s) 214, 462, 832
SduI GDGCHC 1 cut(s) 492
SfaNI GCATC 3 cut(s) 744, 850, 865
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
Sse9I AATT 7 cut(s) 443, 453, 537, 563, 826, 848, 868
SseBI AGGCCT 1 cut(s) 612
SsiI CCGC 3 cut(s) 135, 740, 928
SspMI CTAG 4 cut(s) 192, 402, 692, 955
SstI GAGCTC 1 cut(s) 492
StuI AGGCCT 1 cut(s) 612
StyD4I CCNGG 3 cut(s) 212, 460, 830
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 254
TasI AATT 7 cut(s) 443, 453, 537, 563, 826, 848, 868
TauI GCSGC 3 cut(s) 138, 743, 931
TfiI GAWTC 2 cut(s) 20, 326
Tru1I TTAA 1 cut(s) 867
Tru9I TTAA 1 cut(s) 867
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 4 cut(s) 68, 248, 260, 341
TseI GCWGC 3 cut(s) 228, 737, 821
Tsp45I GTSAC 4 cut(s) 68, 248, 260, 341
TspDTI ATGAA 5 cut(s) 17, 456, 485, 568, 717
TspRI CASTG 1 cut(s) 346
XapI RAATTY 4 cut(s) 453, 537, 826, 848
XceI RCATGY 1 cut(s) 576
XspI CTAG 4 cut(s) 192, 402, 692, 955
Zsp2I ATGCAT 2 cut(s) 656, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.