Prupe.1G352500_v2.0.a1

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010858
Physical Location & Seq
Forward (+)
32768012 .. 32776644
8633 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G352500.1

Sequence Viewer

Length: 723 bp
ATGCCCTACTCTCCCTGGGACATACCTATGCTCTCTAATCCCAATGAGTATTCCAACTTCCAATGTTTTCTTCAGTCTATAACGCCCTCAGTCCCTACTCAACAACAGCCTCCCAAGGTTCCTATGCAAATGCTAAATGGGTGCCTTTCGCAATCCCTTGGCAATAGCGGTATCGCGTGTTTCTCCTTGAGTGACCTTTGGAAGTTTTACAAGGATTGGAGTTGCTTTGGTGCCGGTGTCCCGATTCTCCTCAACAGCGGCGATAGCGTCTTACAATACTATTCTCCATCCTTATCTGCTCTCCAAATATATACTCGGAAACCCGTTGATTATTATTCCAGGTTAGGGATAAGCTGCACACCGAAACTCGAGAGTGACTCCTCAGATGATTCTACCAGTGACCTTGAGGTCTCATGCCAAACAACTGAGCGCTTTGGCCACCTGTATTGCCAGTACAATGAAACAGCCAGTCCTTATGATAGAGTTCCGCTCACCGACAAGATCAATGAGCTAGCTCAGAATTATCCTGCTCTGCTGAAGTTTCAAAGCGTGCAGCTTTCTCCCTATAGCTGGATGGCCGTTGCTTGGTATCCTATCTACCAAATTCCATTCACAAGGAATGCGAAGGATTTGTCTGCATGTTTCATCACTTATAACACATTATCATCTTTTCAAGGAAGCAAGTTGGGTGCTCCAAAATCAATTTACATTTTACCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

241

Amino Acids

26.97

Weight (kDa)

5.09

Isoelectric Point (pI)

57.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 654
AasI GACNNNNNNGTC 1 cut(s) 407
AccB1I GGYRCC 2 cut(s) 141, 230
AccBSI CCGCTC 1 cut(s) 490
AccII CGCG 1 cut(s) 176
AciI CCGC 3 cut(s) 168, 258, 488
AcoI YGGCCR 2 cut(s) 436, 576
AcsI RAATTY 1 cut(s) 603
AcuI CTGAAG 2 cut(s) 56, 557
AfaI GTAC 1 cut(s) 455
AfeI AGCGCT 1 cut(s) 431
AfiI CCNNNNNNNGG 3 cut(s) 345, 570, 585
AgsI TTSAA 2 cut(s) 545, 674
AjnI CCWGG 2 cut(s) 14, 338
AjuI GAANNNNNNNTTGG 2 cut(s) 54, 86
AluBI AGCT 5 cut(s) 354, 511, 515, 556, 570
AluI AGCT 5 cut(s) 354, 511, 515, 556, 570
Alw21I GWGCWC 1 cut(s) 694
Alw26I GTCTC 1 cut(s) 415
Ama87I CYCGRG 1 cut(s) 368
Aor51HI AGCGCT 1 cut(s) 431
AoxI GGCC 2 cut(s) 436, 576
ApeKI GCWGC 2 cut(s) 354, 553
ApoI RAATTY 1 cut(s) 603
ArsI GACNNNNNNTTYG 2 cut(s) 617, 649
AspLEI GCGC 1 cut(s) 432
AsuHPI GGTGA 1 cut(s) 484
AsuNHI GCTAGC 1 cut(s) 511
AvaI CYCGRG 1 cut(s) 368
BalI TGGCCA 1 cut(s) 438
BanI GGYRCC 2 cut(s) 141, 230
BarI GAAGNNNNNNTAC 2 cut(s) 41, 73
Bbv12I GWGCWC 1 cut(s) 694
BbvI GCAGC 2 cut(s) 341, 565
BccI CCATC 2 cut(s) 295, 568
BceAI ACGGC 1 cut(s) 563
BciT130I CCWGG 2 cut(s) 16, 340
BciVI GTATCC 1 cut(s) 600
BcoDI GTCTC 1 cut(s) 415
BfaI CTAG 1 cut(s) 512
BfmI CTRYAG 1 cut(s) 565
BfoI RGCGCY 1 cut(s) 433
BfuI GTATCC 1 cut(s) 600
BisI GCNGC 3 cut(s) 259, 355, 554
BlsI GCNGC 3 cut(s) 260, 356, 555
Bme1390I CCNGG 2 cut(s) 16, 340
BmeT110I CYCGRG 1 cut(s) 368
BmiI GGNNCC 3 cut(s) 120, 143, 232
BmrFI CCNGG 2 cut(s) 16, 340
BmtI GCTAGC 1 cut(s) 515
BplI GAGNNNNNCTC 4 cut(s) 362, 394, 474, 506
BpuEI CTTGAG 2 cut(s) 208, 425
BsaI GGTCTC 1 cut(s) 415
BsaJI CCNNGG 4 cut(s) 14, 15, 114, 157
Bsc4I CCNNNNNNNGG 3 cut(s) 345, 570, 585
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 3 cut(s) 396, 451, 468
BseBI CCWGG 2 cut(s) 16, 340
BseDI CCNNGG 4 cut(s) 14, 15, 114, 157
BseGI GGATG 2 cut(s) 287, 579
BseLI CCNNNNNNNGG 3 cut(s) 345, 570, 585
BseMII CTCAG 4 cut(s) 102, 396, 417, 530
BseNI ACTGG 3 cut(s) 396, 451, 468
BseRI GAGGAG 2 cut(s) 239, 370
BseXI GCAGC 2 cut(s) 341, 565
BsgI GTGCAG 2 cut(s) 340, 572
Bsh1236I CGCG 1 cut(s) 176
BshFI GGCC 2 cut(s) 438, 578
BshNI GGYRCC 2 cut(s) 141, 230
BsiHKAI GWGCWC 1 cut(s) 694
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 1 cut(s) 234
BslFI GGGAC 3 cut(s) 32, 77, 224
BslI CCNNNNNNNGG 3 cut(s) 345, 570, 585
BsmAI GTCTC 1 cut(s) 415
BsmFI GGGAC 3 cut(s) 32, 77, 224
BsmI GAATGC 1 cut(s) 625
BsnI GGCC 2 cut(s) 438, 578
Bso31I GGTCTC 1 cut(s) 415
BsoBI CYCGRG 1 cut(s) 368
Bsp1286I GDGCHC 1 cut(s) 694
Bsp143I GATC 1 cut(s) 501
BspACI CCGC 3 cut(s) 168, 258, 488
BspANI GGCC 2 cut(s) 438, 578
BspCNI CTCAG 4 cut(s) 101, 395, 418, 529
BspFNI CGCG 1 cut(s) 176
BspLI GGNNCC 3 cut(s) 120, 143, 232
BspOI GCTAGC 1 cut(s) 515
BspT107I GGYRCC 2 cut(s) 141, 230
BspTNI GGTCTC 1 cut(s) 415
BsrBI CCGCTC 1 cut(s) 490
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 3 cut(s) 396, 451, 468
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 4 cut(s) 14, 15, 114, 157
BssMI GATC 1 cut(s) 501
BssT1I CCWWGG 2 cut(s) 114, 157
Bst2UI CCWGG 2 cut(s) 16, 340
BstC8I GCNNGC 2 cut(s) 513, 551
BstDEI CTNAG 4 cut(s) 88, 382, 426, 516
BstF5I GGATG 2 cut(s) 287, 579
BstFNI CGCG 1 cut(s) 176
BstH2I RGCGCY 1 cut(s) 433
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 1 cut(s) 504
BstMAI GTCTC 1 cut(s) 415
BstMBI GATC 1 cut(s) 501
BstMWI GCNNNNNNNGC 1 cut(s) 264
BstNI CCWGG 2 cut(s) 16, 340
BstNSI RCATGY 1 cut(s) 642
BstSCI CCNGG 2 cut(s) 14, 338
BstSFI CTRYAG 1 cut(s) 565
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 2 cut(s) 341, 565
BsuI GTATCC 1 cut(s) 600
BsuRI GGCC 2 cut(s) 438, 578
BtsCI GGATG 2 cut(s) 287, 579
BtsIMutI CAGTG 1 cut(s) 403
Cac8I GCNNGC 2 cut(s) 513, 551
CfoI GCGC 1 cut(s) 432
Cfr10I RCCGGY 1 cut(s) 233
CseI GACGC 1 cut(s) 256
Csp6I GTAC 1 cut(s) 454
CspCI CAANNNNNGTGG 2 cut(s) 428, 463
CviAII CATG 2 cut(s) 414, 639
CviJI RGCY 9 cut(s) 109, 354, 438, 467, 511, 515, 556, 570, 578
CviKI_1 RGCY 9 cut(s) 109, 354, 438, 467, 511, 515, 556, 570, 578
CviQI GTAC 1 cut(s) 454
DdeI CTNAG 4 cut(s) 88, 382, 426, 516
DpnI GATC 1 cut(s) 503
DpnII GATC 1 cut(s) 501
DrdI GACNNNNNNGTC 1 cut(s) 407
DseDI GACNNNNNNGTC 1 cut(s) 407
EaeI YGGCCR 2 cut(s) 436, 576
Eco130I CCWWGG 2 cut(s) 114, 157
Eco31I GGTCTC 1 cut(s) 415
Eco47III AGCGCT 1 cut(s) 431
Eco57I CTGAAG 2 cut(s) 56, 557
Eco88I CYCGRG 1 cut(s) 368
EcoRII CCWGG 2 cut(s) 14, 338
EcoT14I CCWWGG 2 cut(s) 114, 157
ErhI CCWWGG 2 cut(s) 114, 157
FaeI CATG 2 cut(s) 417, 642
FaqI GGGAC 3 cut(s) 32, 77, 224
FatI CATG 2 cut(s) 413, 638
Fnu4HI GCNGC 3 cut(s) 259, 355, 554
FokI GGATG 2 cut(s) 274, 586
Fsp4HI GCNGC 3 cut(s) 259, 355, 554
FspBI CTAG 1 cut(s) 512
GlaI GCGC 1 cut(s) 431
GluI GCNGC 3 cut(s) 259, 355, 554
HaeII RGCGCY 1 cut(s) 433
HaeIII GGCC 2 cut(s) 438, 578
HapII CCGG 1 cut(s) 234
HgaI GACGC 1 cut(s) 256
HhaI GCGC 1 cut(s) 432
Hin1II CATG 2 cut(s) 417, 642
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HinfI GANTC 3 cut(s) 244, 377, 389
HpaII CCGG 1 cut(s) 234
HphI GGTGA 1 cut(s) 484
Hpy188I TCNGA 3 cut(s) 318, 385, 519
Hpy188III TCNNGA 2 cut(s) 241, 370
HpyAV CCTTC 1 cut(s) 619
HpyCH4V TGCA 4 cut(s) 127, 357, 553, 638
HpyF10VI GCNNNNNNNGC 1 cut(s) 264
HpyF3I CTNAG 4 cut(s) 88, 382, 426, 516
Hsp92II CATG 2 cut(s) 417, 642
HspAI GCGC 1 cut(s) 430
Kzo9I GATC 1 cut(s) 501
LmnI GCTCC 1 cut(s) 697
Lsp1109I GCAGC 2 cut(s) 341, 565
MaeI CTAG 1 cut(s) 512
MaeIII GTNAC 3 cut(s) 191, 374, 398
MalI GATC 1 cut(s) 503
MbiI CCGCTC 1 cut(s) 490
MboI GATC 1 cut(s) 501
MboII GAAGA 1 cut(s) 62
MhlI GDGCHC 1 cut(s) 694
MlsI TGGCCA 1 cut(s) 438
MluCI AATT 3 cut(s) 520, 603, 702
MluNI TGGCCA 1 cut(s) 438
MlyI GAGTC 1 cut(s) 371
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 5 cut(s) 97, 120, 260, 391, 400
Mox20I TGGCCA 1 cut(s) 438
MscI TGGCCA 1 cut(s) 438
MslI CAYNNNNRTG 1 cut(s) 26
Msp20I TGGCCA 1 cut(s) 438
MspA1I CMGCKG 1 cut(s) 258
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 2 cut(s) 16, 340
Mva1269I GAATGC 1 cut(s) 625
MvaI CCWGG 2 cut(s) 16, 340
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 264
NdeII GATC 1 cut(s) 501
NheI GCTAGC 1 cut(s) 511
NlaIII CATG 2 cut(s) 417, 642
NlaIV GGNNCC 3 cut(s) 120, 143, 232
NmuCI GTSAC 3 cut(s) 191, 374, 398
NspI RCATGY 1 cut(s) 642
PaeR7I CTCGAG 1 cut(s) 368
PasI CCCWGGG 1 cut(s) 15
PctI GAATGC 1 cut(s) 625
PfeI GAWTC 2 cut(s) 244, 389
PkrI GCNGC 3 cut(s) 260, 356, 555
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
PsiI TTATAA 1 cut(s) 654
Psp6I CCWGG 2 cut(s) 14, 338
PspGI CCWGG 2 cut(s) 14, 338
PspN4I GGNNCC 3 cut(s) 120, 143, 232
RsaI GTAC 1 cut(s) 455
RsaNI GTAC 1 cut(s) 454
RseI CAYNNNNRTG 1 cut(s) 26
SatI GCNGC 3 cut(s) 259, 355, 554
Sau3AI GATC 1 cut(s) 501
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 2 cut(s) 16, 340
SduI GDGCHC 1 cut(s) 694
SfcI CTRYAG 1 cut(s) 565
Sfr274I CTCGAG 1 cut(s) 368
SlaI CTCGAG 1 cut(s) 368
SmiMI CAYNNNNRTG 1 cut(s) 26
SmlI CTYRAG 3 cut(s) 187, 368, 404
SmoI CTYRAG 3 cut(s) 187, 368, 404
Sse9I AATT 3 cut(s) 520, 603, 702
SsiI CCGC 3 cut(s) 168, 258, 488
SspMI CTAG 1 cut(s) 512
StyD4I CCNGG 2 cut(s) 14, 338
StyI CCWWGG 2 cut(s) 114, 157
TaqI TCGA 1 cut(s) 369
TasI AATT 3 cut(s) 520, 603, 702
TatI WGTACW 1 cut(s) 453
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 2 cut(s) 244, 389
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 3 cut(s) 191, 374, 398
TseI GCWGC 2 cut(s) 354, 553
Tsp45I GTSAC 3 cut(s) 191, 374, 398
TspDTI ATGAA 2 cut(s) 474, 634
TspRI CASTG 1 cut(s) 403
XapI RAATTY 1 cut(s) 603
XceI RCATGY 1 cut(s) 642
XhoI CTCGAG 1 cut(s) 368
XspI CTAG 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.