AT1G04930

LIN37

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007084
Physical Location & Seq
Reverse (-)
1396265 .. 1399122
2858 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04930.1

Sequence Viewer

Length: 999 bp
ATGTCAATTCCCGATCCCAACTCCTCCGCATCTCTAACGGTGTCTCCGTCTCTATCCACCGCATCGGAAACTCCGGTAACACCAGTAAACACTGTTAGACCACCGCCGTCTCAGCCACCTCCTGCTCCGCCGCCACTACCGCCGCCGACTTACAGACCCATAGCTCCGCTTCGCCACCCTAATCCGTTCCAACAACAATCTGCTTATAGTAATAACCTCTACGCACATTCGATTCCGGTCAGACGCCAAATTCAAGATCCGTCAGCTGTTCTTTACCCGTTTGCTCTACCGGGTCGAGGGTTTTCAGCCCGACCTGTTCGAGGATTCGTCGCAGATCCTTCCGTGACGGCTGGTAATCTGAGTGGGTACCCTCCTCGCCCGAGTTTTACTTACGATCCTGGACCATATGAGCAGCGTCAAATGGAATCCTTGTTGCAGCAGTTTATAAGGGAGAGAAATCCTCAGATTCGTCCATTACCACGCCTTGGATTGGGTTCTCCTGTTGGGTTGGGTCCCATTAGAGCAAGTCCTCAATTTCTGCAACCGCGGGTTGCCCCGCCCCCAACTTCAATTCTAGACACTAGCAGGAATAGAAAGGCCAGAAGCAAGGATGGGGCTCTTGCCGTTGTTAGAGGGAGAAAGGTCCGAATCACTGAGGGGTCTTCTTCTCTTTATTCACTTGGTCGATCGTGGTTGAAAAATGGTGCTCACGTTGGAATTCAGCCGCAAAGGAGTGGTATAATGAAACCTTTGCCAAAACCGTTACCTGTGGATTTAACAACAGAGACAAGTGTACCAGATGATCCAGATGAAGAATCAGCGGATGAAGACAAAGAGGACGAGGAAGCTGTAAAGCAATTATCTGAGAAGGATCTTTTGAAAAGACACATCGAGCGAGCTAAGAAAGTCCGTGCACAATTACGAGAAGAACGGTCGAGGAGGATCAGGAGGTACAAAGAAAGAATAACTCTTATTCTGGCACAATCCGAAGACCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIN37

Protein Analysis

332

Amino Acids

36.79

Weight (kDa)

10.2

Isoelectric Point (pI)

72.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIN37 PF15306 221 - 325 1.5e-08 LIN37
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 446
Acc65I GGTACC 1 cut(s) 366
AccB1I GGYRCC 1 cut(s) 366
AccB7I CCANNNNNTGG 1 cut(s) 485
AccII CGCG 1 cut(s) 547
AclWI GGATC 7 cut(s) 8, 251, 329, 389, 797, 879, 950
AcsI RAATTY 2 cut(s) 249, 717
AcyI GRCGYC 1 cut(s) 244
AfaI GTAC 3 cut(s) 368, 795, 953
AfiI CCNNNNNNNGG 4 cut(s) 296, 320, 485, 490
AgsI TTSAA 4 cut(s) 254, 570, 697, 880
AjnI CCWGG 1 cut(s) 397
AluBI AGCT 4 cut(s) 164, 266, 848, 899
AluI AGCT 4 cut(s) 164, 266, 848, 899
Alw21I GWGCWC 2 cut(s) 709, 916
Alw26I GTCTC 4 cut(s) 48, 54, 114, 779
Alw44I GTGCAC 1 cut(s) 912
AlwI GGATC 7 cut(s) 8, 251, 329, 389, 797, 879, 950
Ama87I CYCGRG 1 cut(s) 379
AoxI GGCC 1 cut(s) 597
ApaLI GTGCAC 1 cut(s) 912
ApeKI GCWGC 2 cut(s) 412, 436
ApoI RAATTY 2 cut(s) 249, 717
Asp718I GGTACC 1 cut(s) 366
AspS9I GGNCC 3 cut(s) 401, 512, 643
AsuC2I CCSGG 1 cut(s) 291
AvaI CYCGRG 1 cut(s) 379
AvaII GGWCC 3 cut(s) 401, 512, 643
BaeGI GKGCMC 1 cut(s) 916
BaeI ACNNNNGTAYC 2 cut(s) 777, 810
BanI GGYRCC 1 cut(s) 366
BanII GRGCYC 1 cut(s) 619
BbsI GAAGAC 2 cut(s) 654, 834
Bbv12I GWGCWC 2 cut(s) 709, 916
BbvI GCAGC 2 cut(s) 424, 448
BccI CCATC 1 cut(s) 605
BceAI ACGGC 3 cut(s) 91, 363, 608
BciT130I CCWGG 1 cut(s) 399
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 4 cut(s) 48, 54, 114, 779
BfaI CTAG 2 cut(s) 575, 582
BisI GCNGC 5 cut(s) 131, 143, 413, 437, 725
BlsI GCNGC 5 cut(s) 132, 144, 414, 438, 726
Bme1390I CCNGG 2 cut(s) 291, 399
Bme18I GGWCC 3 cut(s) 401, 512, 643
BmeT110I CYCGRG 1 cut(s) 379
BmgT120I GGNCC 3 cut(s) 401, 512, 643
BmiI GGNNCC 3 cut(s) 368, 513, 514
BmrFI CCNGG 2 cut(s) 291, 399
BmsI GCATC 2 cut(s) 38, 71
BpiI GAAGAC 2 cut(s) 654, 834
BplI GAGNNNNNCTC 2 cut(s) 445, 477
BpuMI CCSGG 1 cut(s) 291
BsaHI GRCGYC 1 cut(s) 244
BsaJI CCNNGG 2 cut(s) 484, 545
BsaWI WCCGGW 2 cut(s) 73, 235
BsaXI ACNNNNNCTCC 2 cut(s) 28, 58
Bsc4I CCNNNNNNNGG 4 cut(s) 296, 320, 485, 490
Bse1I ACTGG 1 cut(s) 83
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 2 cut(s) 484, 545
BseGI GGATG 2 cut(s) 616, 829
BseLI CCNNNNNNNGG 4 cut(s) 296, 320, 485, 490
BseMII CTCAG 5 cut(s) 125, 350, 476, 645, 855
BseNI ACTGG 1 cut(s) 83
BseRI GAGGAG 3 cut(s) 13, 363, 952
BseSI GKGCMC 1 cut(s) 916
BseXI GCAGC 2 cut(s) 424, 448
Bsh1236I CGCG 1 cut(s) 547
Bsh1285I CGRYCG 2 cut(s) 689, 935
BshFI GGCC 1 cut(s) 599
BshNI GGYRCC 1 cut(s) 366
BsiEI CGRYCG 2 cut(s) 689, 935
BsiHKAI GWGCWC 2 cut(s) 709, 916
BsiHKCI CYCGRG 1 cut(s) 379
BsiSI CCGG 3 cut(s) 74, 236, 290
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 4 cut(s) 296, 320, 485, 490
BsmAI GTCTC 4 cut(s) 48, 54, 114, 779
BsmBI CGTCTC 2 cut(s) 54, 114
BsmFI GGGAC 1 cut(s) 498
BsnI GGCC 1 cut(s) 599
BsoBI CYCGRG 1 cut(s) 379
Bsp1286I GDGCHC 3 cut(s) 619, 709, 916
Bsp143I GATC 8 cut(s) 13, 256, 334, 394, 686, 802, 871, 942
BspANI GGCC 1 cut(s) 599
BspCNI CTCAG 5 cut(s) 124, 351, 475, 646, 856
BspFNI CGCG 1 cut(s) 547
BspLI GGNNCC 3 cut(s) 368, 513, 514
BspPI GGATC 7 cut(s) 8, 251, 329, 389, 797, 879, 950
BspT107I GGYRCC 1 cut(s) 366
BsrI ACTGG 1 cut(s) 83
BssECI CCNNGG 2 cut(s) 484, 545
BssMI GATC 8 cut(s) 13, 256, 334, 394, 686, 802, 871, 942
BssNI GRCGYC 1 cut(s) 244
BssT1I CCWWGG 1 cut(s) 484
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 4 cut(s) 40, 94, 762, 933
BstACI GRCGYC 1 cut(s) 244
BstC8I GCNNGC 1 cut(s) 897
BstDEI CTNAG 6 cut(s) 111, 359, 462, 654, 864, 900
BstDSI CCRYGG 1 cut(s) 545
BstENI CCTNNNNNAGG 1 cut(s) 318
BstF5I GGATG 2 cut(s) 616, 829
BstFNI CGCG 1 cut(s) 547
BstKTI GATC 8 cut(s) 16, 259, 337, 397, 689, 805, 874, 945
BstMAI GTCTC 4 cut(s) 48, 54, 114, 779
BstMBI GATC 8 cut(s) 13, 256, 334, 394, 686, 802, 871, 942
BstMCI CGRYCG 2 cut(s) 689, 935
BstMWI GCNNNNNNNGC 2 cut(s) 112, 139
BstNI CCWGG 1 cut(s) 399
BstSCI CCNGG 2 cut(s) 289, 397
BstSLI GKGCMC 1 cut(s) 916
BstUI CGCG 1 cut(s) 547
BstV1I GCAGC 2 cut(s) 424, 448
BstV2I GAAGAC 2 cut(s) 654, 834
BstX2I RGATCY 3 cut(s) 256, 334, 871
BstYI RGATCY 3 cut(s) 256, 334, 871
BsuRI GGCC 1 cut(s) 599
BtgI CCRYGG 1 cut(s) 545
BtsCI GGATG 2 cut(s) 616, 829
BtsIMutI CAGTG 2 cut(s) 90, 651
Cac8I GCNNGC 1 cut(s) 897
Cfr13I GGNCC 3 cut(s) 401, 512, 643
Cfr42I CCGCGG 1 cut(s) 548
CseI GACGC 2 cut(s) 252, 404
Csp6I GTAC 3 cut(s) 367, 794, 952
CviQI GTAC 3 cut(s) 367, 794, 952
DdeI CTNAG 6 cut(s) 111, 359, 462, 654, 864, 900
DpnI GATC 8 cut(s) 15, 258, 336, 396, 688, 804, 873, 944
DpnII GATC 8 cut(s) 13, 256, 334, 394, 686, 802, 871, 942
EciI GGCGGA 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 484
Eco24I GRGCYC 1 cut(s) 619
Eco47I GGWCC 3 cut(s) 401, 512, 643
Eco88I CYCGRG 1 cut(s) 379
EcoNI CCTNNNNNAGG 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 512
EcoRI GAATTC 1 cut(s) 717
EcoRII CCWGG 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 484
EcoT38I GRGCYC 1 cut(s) 619
ErhI CCWWGG 1 cut(s) 484
Esp3I CGTCTC 2 cut(s) 54, 114
FaiI YATR 6 cut(s) 161, 207, 406, 408, 446, 740
FaqI GGGAC 1 cut(s) 498
FauI CCCGC 2 cut(s) 540, 564
FauNDI CATATG 1 cut(s) 406
Fnu4HI GCNGC 5 cut(s) 131, 143, 413, 437, 725
FokI GGATG 2 cut(s) 623, 836
FriOI GRGCYC 1 cut(s) 619
Fsp4HI GCNGC 5 cut(s) 131, 143, 413, 437, 725
FspBI CTAG 2 cut(s) 575, 582
GluI GCNGC 5 cut(s) 131, 143, 413, 437, 725
HaeIII GGCC 1 cut(s) 599
HapII CCGG 3 cut(s) 74, 236, 290
HgaI GACGC 2 cut(s) 252, 404
Hin1I GRCGYC 1 cut(s) 244
HinfI GANTC 6 cut(s) 232, 324, 425, 466, 648, 815
HpaII CCGG 3 cut(s) 74, 236, 290
Hpy166II GTNNAC 3 cut(s) 88, 794, 914
Hpy188I TCNGA 7 cut(s) 67, 242, 360, 465, 647, 865, 988
Hpy188III TCNNGA 5 cut(s) 11, 254, 575, 806, 946
Hpy8I GTNNAC 3 cut(s) 88, 794, 914
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 2 cut(s) 348, 862
HpyCH4III ACNGT 4 cut(s) 40, 94, 762, 933
HpyCH4IV ACGT 1 cut(s) 711
HpyCH4V TGCA 3 cut(s) 436, 541, 914
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 139
HpyF3I CTNAG 6 cut(s) 111, 359, 462, 654, 864, 900
HpySE526I ACGT 1 cut(s) 711
Hsp92I GRCGYC 1 cut(s) 244
KflI GGGWCCC 1 cut(s) 512
KpnI GGTACC 1 cut(s) 370
KspI CCGCGG 1 cut(s) 548
Kzo9I GATC 8 cut(s) 13, 256, 334, 394, 686, 802, 871, 942
LmnI GCTCC 2 cut(s) 130, 169
Lsp1109I GCAGC 2 cut(s) 424, 448
LweI GCATC 2 cut(s) 38, 71
MaeI CTAG 2 cut(s) 575, 582
MaeII ACGT 1 cut(s) 711
MaeIII GTNAC 3 cut(s) 76, 343, 762
MalI GATC 8 cut(s) 15, 258, 336, 396, 688, 804, 873, 944
MboI GATC 8 cut(s) 13, 256, 334, 394, 686, 802, 871, 942
MboII GAAGA 5 cut(s) 654, 657, 824, 839, 938
MflI RGATCY 3 cut(s) 256, 334, 871
MhlI GDGCHC 3 cut(s) 619, 709, 916
MluCI AATT 7 cut(s) 6, 249, 533, 570, 717, 857, 917
MmeI TCCRAC 2 cut(s) 214, 694
MseI TTAA 1 cut(s) 776
MspA1I CMGCKG 3 cut(s) 266, 547, 821
MspI CCGG 3 cut(s) 74, 236, 290
MspR9I CCNGG 2 cut(s) 291, 399
MvaI CCWGG 1 cut(s) 399
MvnI CGCG 1 cut(s) 547
MwoI GCNNNNNNNGC 2 cut(s) 112, 139
NciI CCSGG 1 cut(s) 291
NdeI CATATG 1 cut(s) 406
NdeII GATC 8 cut(s) 13, 256, 334, 394, 686, 802, 871, 942
NlaIV GGNNCC 3 cut(s) 368, 513, 514
NmuCI GTSAC 1 cut(s) 343
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PfeI GAWTC 6 cut(s) 232, 324, 425, 466, 648, 815
PflMI CCANNNNNTGG 1 cut(s) 485
PfoI TCCNGGA 1 cut(s) 397
PkrI GCNGC 5 cut(s) 132, 144, 414, 438, 726
Ple19I CGATCG 1 cut(s) 689
PpuMI RGGWCCY 1 cut(s) 512
PsiI TTATAA 1 cut(s) 446
Psp5II RGGWCCY 1 cut(s) 512
Psp6I CCWGG 1 cut(s) 397
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 3 cut(s) 368, 513, 514
PspPI GGNCC 3 cut(s) 401, 512, 643
PspPPI RGGWCCY 1 cut(s) 512
PsuI RGATCY 3 cut(s) 256, 334, 871
PvuI CGATCG 1 cut(s) 689
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 3 cut(s) 368, 795, 953
RsaNI GTAC 3 cut(s) 367, 794, 952
SacII CCGCGG 1 cut(s) 548
SaqAI TTAA 1 cut(s) 776
SatI GCNGC 5 cut(s) 131, 143, 413, 437, 725
Sau3AI GATC 8 cut(s) 13, 256, 334, 394, 686, 802, 871, 942
Sau96I GGNCC 3 cut(s) 401, 512, 643
ScrFI CCNGG 2 cut(s) 291, 399
SduI GDGCHC 3 cut(s) 619, 709, 916
SfaNI GCATC 2 cut(s) 38, 71
Sfr303I CCGCGG 1 cut(s) 548
SgrBI CCGCGG 1 cut(s) 548
SinI GGWCC 3 cut(s) 401, 512, 643
Sse9I AATT 7 cut(s) 6, 249, 533, 570, 717, 857, 917
SspMI CTAG 2 cut(s) 575, 582
StyD4I CCNGG 2 cut(s) 289, 397
StyI CCWWGG 1 cut(s) 484
TaaI ACNGT 4 cut(s) 40, 94, 762, 933
TaiI ACGT 1 cut(s) 714
TaqI TCGA 6 cut(s) 230, 295, 319, 685, 891, 935
TasI AATT 7 cut(s) 6, 249, 533, 570, 717, 857, 917
TauI GCSGC 3 cut(s) 133, 145, 727
TfiI GAWTC 6 cut(s) 232, 324, 425, 466, 648, 815
Tru1I TTAA 1 cut(s) 776
Tru9I TTAA 1 cut(s) 776
TscAI CASTG 2 cut(s) 97, 658
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 2 cut(s) 412, 436
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 3 cut(s) 758, 825, 840
TspGWI ACGGA 5 cut(s) 36, 174, 249, 331, 899
TspRI CASTG 2 cut(s) 97, 658
Van91I CCANNNNNTGG 1 cut(s) 485
VneI GTGCAC 1 cut(s) 912
VpaK11BI GGWCC 3 cut(s) 401, 512, 643
XagI CCTNNNNNAGG 1 cut(s) 318
XapI RAATTY 2 cut(s) 249, 717
XbaI TCTAGA 1 cut(s) 574
XspI CTAG 2 cut(s) 575, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.