RchiOBHm_Chr1g0313411

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0007084
Physical Location & Seq
Reverse (-)
486580 .. 493108
6529 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54423

Sequence Viewer

Length: 780 bp
ATGGCTATAGATCCCAACCACGCCACCGCCACAGCCACGGCCACCGGCGCCGCCGCCACACGGCCGCTGAGACCCATAGCTCCGGCACCTCCTCCTGCCCCTCCTGCTCATATTTACACGGTCCCTATTCGGGCCCAATCTTCACCTGGTGCACTTGTCTACCCATCTGCCCGCGCTCCCTACCCATCTCCCCTCAATTTTCATTCCCATCCTTATTCTCCTCATCTTCATCCTCCTCCTCCTCCTTCTCTTCCCTCGTACCAATCTCCTCTCCCCCCTCCAATTAAGCCCGACCTTCGCTTTCCTGGCCTGGTTGCTCCTCCGTCTTCAGTTCCCGACTCCAATGGCATCAGGGATAAAAGCAGAGATGACACTCTTTCTGTCATTCAAGATCGGAAAGTCAGGATAACAGATGGAGCTTCTCTATATGCGCTTTGTCGGTCATGGCTGAGGAACGGTTCTCCCGAAGAAAGTCAGACACGATATGGTGATGCTACAAGGTCTCTTCCAAAGCCTTCACCCATACCTATGGCAAGTGCGACTCCGCCAAAGAAGGAAGAAGGCGATAAAAAAGAAGACATTGAAGACAAGGATGAGGAATCCCTTGAACATGTATCACCAGAAGATCTGTTAAAAAGACATGTCAAACGTGCTAGAAAGGTTCGAGCACGATTAAGAGAAGAACGTTTGCGGCGCATTGCAAGGTACAAGTCTAGGCTTGCTCTTCTCCTTCCTCCACTGGTAGAACAGTTCCGAAATGATCTAGCAGCTGGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIN37

Protein Analysis

259

Amino Acids

28.45

Weight (kDa)

9.79

Isoelectric Point (pI)

76.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIN37 PF15306 135 - 243 7.1e-08 LIN37
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 47, 85
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 174
AciI CCGC 7 cut(s) 27, 51, 54, 65, 172, 545, 691
AclI AACGTT 1 cut(s) 685
AclWI GGATC 1 cut(s) 5
AcoI YGGCCR 2 cut(s) 39, 62
AcuI CTGAAG 1 cut(s) 312
AcyI GRCGYC 1 cut(s) 48
AdeI CACNNNGTG 1 cut(s) 149
AfaI GTAC 2 cut(s) 260, 707
AfiI CCNNNNNNNGG 2 cut(s) 60, 130
AflIII ACRYGT 2 cut(s) 610, 640
AgsI TTSAA 3 cut(s) 389, 584, 608
AjnI CCWGG 3 cut(s) 145, 304, 309
AluBI AGCT 3 cut(s) 80, 419, 770
AluI AGCT 3 cut(s) 80, 419, 770
Alw21I GWGCWC 2 cut(s) 154, 670
Alw26I GTCTC 2 cut(s) 64, 507
Alw44I GTGCAC 1 cut(s) 150
AlwI GGATC 1 cut(s) 5
AoxI GGCC 4 cut(s) 39, 62, 132, 307
ApaI GGGCCC 1 cut(s) 136
ApaLI GTGCAC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 767
AspLEI GCGC 4 cut(s) 50, 176, 433, 696
AspS9I GGNCC 3 cut(s) 121, 132, 133
AsuHPI GGTGA 4 cut(s) 135, 500, 510, 609
AvaII GGWCC 1 cut(s) 121
BaeGI GKGCMC 2 cut(s) 136, 154
BanI GGYRCC 2 cut(s) 47, 85
BanII GRGCYC 1 cut(s) 136
BbsI GAAGAC 3 cut(s) 318, 582, 591
Bbv12I GWGCWC 2 cut(s) 154, 670
BbvCI CCTCAGC 1 cut(s) 449
BccI CCATC 4 cut(s) 172, 193, 216, 407
BceAI ACGGC 2 cut(s) 54, 77
BciT130I CCWGG 3 cut(s) 147, 306, 311
BcoDI GTCTC 2 cut(s) 64, 507
BfaI CTAG 3 cut(s) 654, 714, 764
BfmI CTRYAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 51
BglII AGATCT 1 cut(s) 625
BisI GCNGC 5 cut(s) 51, 54, 65, 692, 768
BlsI GCNGC 5 cut(s) 52, 55, 66, 693, 769
Bme1390I CCNGG 3 cut(s) 147, 306, 311
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 3 cut(s) 121, 132, 133
BmiI GGNNCC 4 cut(s) 49, 87, 123, 134
BmrFI CCNGG 3 cut(s) 147, 306, 311
BmsI GCATC 2 cut(s) 357, 481
BpiI GAAGAC 3 cut(s) 318, 582, 591
Bpu10I CCTNAGC 1 cut(s) 449
BsaHI GRCGYC 1 cut(s) 48
BsaI GGTCTC 2 cut(s) 64, 507
BsaJI CCNNGG 1 cut(s) 36
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 130
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 744
Bse3DI GCAATG 1 cut(s) 696
BseBI CCWGG 3 cut(s) 147, 306, 311
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 3 cut(s) 208, 229, 598
BseLI CCNNNNNNNGG 2 cut(s) 60, 130
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 2 cut(s) 59, 440
BseNI ACTGG 1 cut(s) 744
BseRI GAGGAG 7 cut(s) 81, 210, 225, 228, 231, 258, 309
BseSI GKGCMC 2 cut(s) 136, 154
BseX3I CGGCCG 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 174
Bsh1285I CGRYCG 1 cut(s) 65
BshFI GGCC 4 cut(s) 41, 64, 134, 309
BshNI GGYRCC 2 cut(s) 47, 85
BsiEI CGRYCG 1 cut(s) 65
BsiHKAI GWGCWC 2 cut(s) 154, 670
BsiSI CCGG 2 cut(s) 45, 83
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 60, 130
BsmAI GTCTC 2 cut(s) 64, 507
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 4 cut(s) 41, 64, 134, 309
Bso31I GGTCTC 2 cut(s) 64, 507
Bsp120I GGGCCC 1 cut(s) 132
Bsp1286I GDGCHC 3 cut(s) 136, 154, 670
Bsp143I GATC 4 cut(s) 10, 391, 625, 760
BspACI CCGC 7 cut(s) 27, 51, 54, 65, 172, 545, 691
BspANI GGCC 4 cut(s) 41, 64, 134, 309
BspCNI CTCAG 2 cut(s) 60, 441
BspFNI CGCG 1 cut(s) 174
BspLI GGNNCC 4 cut(s) 49, 87, 123, 134
BspPI GGATC 1 cut(s) 5
BspQI GCTCTTC 1 cut(s) 729
BspT107I GGYRCC 2 cut(s) 47, 85
BspTNI GGTCTC 2 cut(s) 64, 507
BsrDI GCAATG 1 cut(s) 696
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 1 cut(s) 744
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 4 cut(s) 10, 391, 625, 760
BssNI GRCGYC 1 cut(s) 48
Bst2UI CCWGG 3 cut(s) 147, 306, 311
Bst4CI ACNGT 3 cut(s) 121, 458, 750
Bst6I CTCTTC 3 cut(s) 255, 510, 729
BstACI GRCGYC 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 172, 720
BstDEI CTNAG 2 cut(s) 68, 449
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 3 cut(s) 208, 229, 598
BstFNI CGCG 1 cut(s) 174
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 4 cut(s) 50, 176, 433, 696
BstKTI GATC 4 cut(s) 13, 394, 628, 763
BstMAI GTCTC 2 cut(s) 64, 507
BstMBI GATC 4 cut(s) 10, 391, 625, 760
BstMCI CGRYCG 1 cut(s) 65
BstMWI GCNNNNNNNGC 3 cut(s) 47, 104, 306
BstNI CCWGG 3 cut(s) 147, 306, 311
BstNSI RCATGY 2 cut(s) 614, 644
BstSCI CCNGG 3 cut(s) 145, 304, 309
BstSFI CTRYAG 1 cut(s) 6
BstSLI GKGCMC 2 cut(s) 136, 154
BstUI CGCG 1 cut(s) 174
BstV2I GAAGAC 3 cut(s) 318, 582, 591
BstX2I RGATCY 2 cut(s) 10, 625
BstXI CCANNNNNNTGG 1 cut(s) 529
BstYI RGATCY 2 cut(s) 10, 625
BstZI CGGCCG 1 cut(s) 62
BsuRI GGCC 4 cut(s) 41, 64, 134, 309
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 3 cut(s) 208, 229, 598
BtsIMutI CAGTG 1 cut(s) 737
Cac8I GCNNGC 2 cut(s) 172, 720
CfoI GCGC 4 cut(s) 50, 176, 433, 696
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 3 cut(s) 121, 132, 133
CsiI ACCWGGT 1 cut(s) 145
Csp6I GTAC 2 cut(s) 259, 706
CviAII CATG 3 cut(s) 444, 611, 641
CviQI GTAC 2 cut(s) 259, 706
DdeI CTNAG 2 cut(s) 68, 449
DinI GGCGCC 1 cut(s) 49
DpnI GATC 4 cut(s) 12, 393, 627, 762
DpnII GATC 4 cut(s) 10, 391, 625, 760
DraIII CACNNNGTG 1 cut(s) 149
EaeI YGGCCR 2 cut(s) 39, 62
EagI CGGCCG 1 cut(s) 62
Eam1104I CTCTTC 3 cut(s) 255, 510, 729
EarI CTCTTC 3 cut(s) 255, 510, 729
EciI GGCGGA 1 cut(s) 534
EclXI CGGCCG 1 cut(s) 62
Eco24I GRGCYC 1 cut(s) 136
Eco31I GGTCTC 2 cut(s) 64, 507
Eco47I GGWCC 1 cut(s) 121
Eco52I CGGCCG 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 312
EcoRII CCWGG 3 cut(s) 145, 304, 309
EcoT38I GRGCYC 1 cut(s) 136
EgeI GGCGCC 1 cut(s) 49
EheI GGCGCC 1 cut(s) 49
FaeI CATG 3 cut(s) 447, 614, 644
FaqI GGGAC 1 cut(s) 107
FatI CATG 3 cut(s) 443, 610, 640
FauI CCCGC 1 cut(s) 179
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 5 cut(s) 51, 54, 65, 692, 768
FokI GGATG 3 cut(s) 195, 216, 605
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 5 cut(s) 51, 54, 65, 692, 768
FspBI CTAG 3 cut(s) 654, 714, 764
GlaI GCGC 4 cut(s) 49, 175, 432, 695
GluI GCNGC 5 cut(s) 51, 54, 65, 692, 768
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 4 cut(s) 41, 64, 134, 309
HapII CCGG 2 cut(s) 45, 83
HhaI GCGC 4 cut(s) 50, 176, 433, 696
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 3 cut(s) 447, 614, 644
Hin6I GCGC 4 cut(s) 48, 174, 431, 694
HinP1I GCGC 4 cut(s) 48, 174, 431, 694
HinfI GANTC 3 cut(s) 338, 541, 599
HpaII CCGG 2 cut(s) 45, 83
HphI GGTGA 4 cut(s) 135, 500, 510, 609
Hpy166II GTNNAC 2 cut(s) 152, 160
Hpy188I TCNGA 3 cut(s) 396, 477, 755
Hpy188III TCNNGA 4 cut(s) 335, 389, 403, 464
Hpy8I GTNNAC 2 cut(s) 152, 160
HpyAV CCTTC 6 cut(s) 255, 305, 525, 547, 554, 740
HpyCH4III ACNGT 3 cut(s) 121, 458, 750
HpyCH4IV ACGT 2 cut(s) 649, 685
HpyCH4V TGCA 2 cut(s) 152, 701
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 104, 306
HpyF3I CTNAG 2 cut(s) 68, 449
HpySE526I ACGT 2 cut(s) 649, 685
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 3 cut(s) 447, 614, 644
HspAI GCGC 4 cut(s) 48, 174, 431, 694
KasI GGCGCC 1 cut(s) 47
Kzo9I GATC 4 cut(s) 10, 391, 625, 760
LguI GCTCTTC 1 cut(s) 729
LmnI GCTCC 4 cut(s) 85, 181, 322, 416
LweI GCATC 2 cut(s) 357, 481
MabI ACCWGGT 1 cut(s) 145
MaeI CTAG 3 cut(s) 654, 714, 764
MaeII ACGT 2 cut(s) 649, 685
MalI GATC 4 cut(s) 12, 393, 627, 762
MboI GATC 4 cut(s) 10, 391, 625, 760
MflI RGATCY 2 cut(s) 10, 625
MhlI GDGCHC 3 cut(s) 136, 154, 670
MluCI AATT 3 cut(s) 196, 282, 775
Mly113I GGCGCC 1 cut(s) 48
MlyI GAGTC 2 cut(s) 332, 535
MseI TTAA 3 cut(s) 285, 632, 674
MslI CAYNNNNRTG 1 cut(s) 527
MspA1I CMGCKG 2 cut(s) 67, 770
MspI CCGG 2 cut(s) 45, 83
MspR9I CCNGG 3 cut(s) 147, 306, 311
MvaI CCWGG 3 cut(s) 147, 306, 311
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 3 cut(s) 47, 104, 306
NarI GGCGCC 1 cut(s) 48
NdeII GATC 4 cut(s) 10, 391, 625, 760
NlaIII CATG 3 cut(s) 447, 614, 644
NlaIV GGNNCC 4 cut(s) 49, 87, 123, 134
NspI RCATGY 2 cut(s) 614, 644
PciI ACATGT 2 cut(s) 610, 640
PciSI GCTCTTC 1 cut(s) 729
PcsI WCGNNNNNNNCGW 1 cut(s) 462
PfeI GAWTC 1 cut(s) 599
PkrI GCNGC 5 cut(s) 52, 55, 66, 693, 769
PleI GAGTC 2 cut(s) 332, 535
PluTI GGCGCC 1 cut(s) 51
PpsI GAGTC 2 cut(s) 332, 535
PscI ACATGT 2 cut(s) 610, 640
Psp1406I AACGTT 1 cut(s) 685
Psp6I CCWGG 3 cut(s) 145, 304, 309
PspGI CCWGG 3 cut(s) 145, 304, 309
PspN4I GGNNCC 4 cut(s) 49, 87, 123, 134
PspOMI GGGCCC 1 cut(s) 132
PspPI GGNCC 3 cut(s) 121, 132, 133
PsuI RGATCY 2 cut(s) 10, 625
PvuII CAGCTG 1 cut(s) 770
RsaI GTAC 2 cut(s) 260, 707
RsaNI GTAC 2 cut(s) 259, 706
RseI CAYNNNNRTG 1 cut(s) 527
SapI GCTCTTC 1 cut(s) 729
SaqAI TTAA 3 cut(s) 285, 632, 674
SatI GCNGC 5 cut(s) 51, 54, 65, 692, 768
Sau3AI GATC 4 cut(s) 10, 391, 625, 760
Sau96I GGNCC 3 cut(s) 121, 132, 133
SchI GAGTC 2 cut(s) 332, 535
ScrFI CCNGG 3 cut(s) 147, 306, 311
SduI GDGCHC 3 cut(s) 136, 154, 670
SexAI ACCWGGT 1 cut(s) 145
SfaNI GCATC 2 cut(s) 357, 481
SfcI CTRYAG 1 cut(s) 6
SfoI GGCGCC 1 cut(s) 49
SgrAI CRCCGGYG 1 cut(s) 44
SinI GGWCC 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 527
Sse9I AATT 3 cut(s) 196, 282, 775
SsiI CCGC 7 cut(s) 27, 51, 54, 65, 172, 545, 691
SspDI GGCGCC 1 cut(s) 47
SspMI CTAG 3 cut(s) 654, 714, 764
StyD4I CCNGG 3 cut(s) 145, 304, 309
TaaI ACNGT 3 cut(s) 121, 458, 750
TaiI ACGT 2 cut(s) 652, 688
TaqI TCGA 1 cut(s) 664
TaqII GACCGA 1 cut(s) 429
TasI AATT 3 cut(s) 196, 282, 775
TauI GCSGC 4 cut(s) 53, 56, 67, 694
TfiI GAWTC 1 cut(s) 599
Tru1I TTAA 3 cut(s) 285, 632, 674
Tru9I TTAA 3 cut(s) 285, 632, 674
TscAI CASTG 1 cut(s) 744
TseI GCWGC 1 cut(s) 767
TspDTI ATGAA 2 cut(s) 191, 218
TspGWI ACGGA 1 cut(s) 312
TspRI CASTG 1 cut(s) 744
VneI GTGCAC 1 cut(s) 150
VpaK11BI GGWCC 1 cut(s) 121
XceI RCATGY 2 cut(s) 614, 644
XcmI CCANNNNNNNNNTGG 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 3 cut(s) 654, 714, 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.