AT2G32840

LIN37

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007084
Physical Location & Seq
Reverse (-)
13932839 .. 13934949
2111 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G32840.2

Sequence Viewer

Length: 1014 bp
ATGTCTACTCCCGATCCCAATCCCAATCCAAATCCAAATCCTTCCGTCTCTGTAGCAGTATCGACTCCAATCGTCACCGCATCTGAATCTCCGGTGACACAACCTAACACAGTCATAACGCCGTCGTCTCAACCTCAACCTCAAACACCAGCTTCGTCGTACAGAGCCATAGCTCCGCTTCATCGTCATCATCCTCATCAAAATATCTACACTAACCCTTTACCGATTAGGCGTTCGAATTCCGTTACTAATTCGCCTCATCAGCCTCCTCACCCAGACCCGTCTAGTCTGATATACCCGTTTGGTTCTTCGGGTCGAGGGTTTCCGACCCGACCCGTTAGACAGAATTCCAATTCCGTCGCTGATCCAGTTGGTAGTCCTAGTCCAGGTGGGTATACTCCTCGAGGGCCAGTTTACGGATACCACCATGGCCAATTCGTGTCGAATTTGGATCCAATGAATCAGTTCATGAGAGCTGCACATCCTCAGAATCAACAATCTCCTCAACTTGGTTCCGGTCATATGAAAGGAGTTCCTCATTTTTTGCAACCTCGGGCTACTCCTTCTCCAACTTCAATTCTAGACAACAGTGGGCATAAGAAGGCCAGGAGCCGGGATGATGCTCTGGTCCTCGTTAGAAAAAGAAAGGTTAGAATAACCGAGGGAGCTTCTTTATACTCGCTGTGTCGATCTTGGTTGAGAAATGGTGCTCATGAGGGAATTAAGCCGCAGCGAATTGATATGATGACATGTTTGCCAAAGCCTTTACCTGTGGACAAGACGGAGACAAGTTTGCCAAAAGATTTAGTTGAAGAAGCAATTTGCGAAGAAGACAAAGAGGACGAGGAATCTGTGAAACATTTGTCAGAATCTGATCTTTTGAAAAGACATATAGACCGAGCTAAGAAGGTCCGCGCTCGATTGAGAGAAGAACGGTTAAAGAGAATCGCGAGGTACAAGGCAAGATTGGCTCTTCTTCTGCCACCCTTTGGAGAGCAATGCAGGAACGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIN37

Protein Analysis

337

Amino Acids

37.38

Weight (kDa)

9.81

Isoelectric Point (pI)

57.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 402
AccB7I CCANNNNNTGG 1 cut(s) 989
AccI GTMKAC 2 cut(s) 5, 395
AccII CGCG 2 cut(s) 915, 950
AciI CCGC 4 cut(s) 78, 176, 728, 913
AclWI GGATC 4 cut(s) 8, 359, 446, 459
AcoI YGGCCR 1 cut(s) 430
AcsI RAATTY 3 cut(s) 238, 346, 445
AfaI GTAC 2 cut(s) 161, 956
AfiI CCNNNNNNNGG 5 cut(s) 386, 416, 509, 612, 989
AflIII ACRYGT 1 cut(s) 749
AgsI TTSAA 3 cut(s) 576, 812, 883
AjnI CCWGG 2 cut(s) 385, 605
AluBI AGCT 5 cut(s) 152, 173, 476, 668, 902
AluI AGCT 5 cut(s) 152, 173, 476, 668, 902
Alw21I GWGCWC 1 cut(s) 712
Alw26I GTCTC 3 cut(s) 52, 132, 779
AlwI GGATC 4 cut(s) 8, 359, 446, 459
AlwNI CAGNNNCTG 1 cut(s) 872
Ama87I CYCGRG 2 cut(s) 402, 552
AoxI GGCC 3 cut(s) 407, 430, 603
ApeKI GCWGC 2 cut(s) 476, 730
ApoI RAATTY 3 cut(s) 238, 346, 445
Asp700I GAANNNNTTC 1 cut(s) 464
AspLEI GCGC 1 cut(s) 917
AspS9I GGNCC 3 cut(s) 407, 628, 910
AsuC2I CCSGG 1 cut(s) 614
AsuHPI GGTGA 3 cut(s) 67, 106, 263
AsuII TTCGAA 1 cut(s) 236
AvaI CYCGRG 2 cut(s) 402, 552
AvaII GGWCC 2 cut(s) 628, 910
BalI TGGCCA 1 cut(s) 432
BamHI GGATCC 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 837
Bbv12I GWGCWC 1 cut(s) 712
BbvI GCAGC 2 cut(s) 463, 742
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 2 cut(s) 387, 607
BciVI GTATCC 1 cut(s) 413
BcnI CCSGG 1 cut(s) 614
BcoDI GTCTC 3 cut(s) 52, 132, 779
BfaI CTAG 3 cut(s) 285, 381, 581
BfmI CTRYAG 1 cut(s) 51
BfuI GTATCC 1 cut(s) 413
BisI GCNGC 3 cut(s) 477, 728, 731
BlsI GCNGC 3 cut(s) 478, 729, 732
Bme1390I CCNGG 3 cut(s) 387, 607, 614
Bme18I GGWCC 2 cut(s) 628, 910
BmeT110I CYCGRG 2 cut(s) 402, 552
BmgT120I GGNCC 3 cut(s) 407, 628, 910
BmiI GGNNCC 3 cut(s) 453, 514, 611
BmrFI CCNGG 3 cut(s) 387, 607, 614
BmsI GCATC 2 cut(s) 89, 610
BpiI GAAGAC 1 cut(s) 837
Bpu14I TTCGAA 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 614
BsaBI GATNNNNATC 1 cut(s) 18
BsaJI CCNNGG 3 cut(s) 427, 551, 660
BsaWI WCCGGW 2 cut(s) 91, 515
BsaXI ACNNNNNCTCC 2 cut(s) 550, 580
Bsc4I CCNNNNNNNGG 5 cut(s) 386, 416, 509, 612, 989
Bse1I ACTGG 2 cut(s) 368, 410
Bse3DI GCAATG 1 cut(s) 1004
Bse8I GATNNNNATC 1 cut(s) 18
BseBI CCWGG 2 cut(s) 387, 607
BseDI CCNNGG 3 cut(s) 427, 551, 660
BseGI GGATG 3 cut(s) 190, 481, 622
BseJI GATNNNNATC 1 cut(s) 18
BseLI CCNNNNNNNGG 5 cut(s) 386, 416, 509, 612, 989
BseMI GCAATG 1 cut(s) 1004
BseMII CTCAG 1 cut(s) 500
BseNI ACTGG 2 cut(s) 368, 410
BseRI GAGGAG 3 cut(s) 258, 390, 492
BseXI GCAGC 2 cut(s) 463, 742
BsgI GTGCAG 1 cut(s) 462
Bsh1236I CGCG 2 cut(s) 915, 950
BshFI GGCC 3 cut(s) 409, 432, 605
BsiHKAI GWGCWC 1 cut(s) 712
BsiHKCI CYCGRG 2 cut(s) 402, 552
BsiSI CCGG 3 cut(s) 92, 516, 613
BslI CCNNNNNNNGG 5 cut(s) 386, 416, 509, 612, 989
BsmAI GTCTC 3 cut(s) 52, 132, 779
BsmBI CGTCTC 2 cut(s) 52, 132
BsnI GGCC 3 cut(s) 409, 432, 605
BsoBI CYCGRG 2 cut(s) 402, 552
Bsp119I TTCGAA 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 712
Bsp143I GATC 5 cut(s) 13, 364, 451, 689, 874
Bsp19I CCATGG 1 cut(s) 427
Bsp68I TCGCGA 1 cut(s) 950
BspACI CCGC 4 cut(s) 78, 176, 728, 913
BspANI GGCC 3 cut(s) 409, 432, 605
BspCNI CTCAG 1 cut(s) 499
BspFNI CGCG 2 cut(s) 915, 950
BspHI TCATGA 2 cut(s) 468, 712
BspLI GGNNCC 3 cut(s) 453, 514, 611
BspPI GGATC 4 cut(s) 8, 359, 446, 459
BspQI GCTCTTC 1 cut(s) 978
BspT104I TTCGAA 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 1004
BsrI ACTGG 2 cut(s) 368, 410
BssECI CCNNGG 3 cut(s) 427, 551, 660
BssMI GATC 5 cut(s) 13, 364, 451, 689, 874
BssNAI GTATAC 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 427
Bst1107I GTATAC 1 cut(s) 396
Bst2UI CCWGG 2 cut(s) 387, 607
Bst4CI ACNGT 3 cut(s) 112, 590, 936
Bst6I CTCTTC 1 cut(s) 978
BstBI TTCGAA 1 cut(s) 236
BstDEI CTNAG 2 cut(s) 486, 903
BstDSI CCRYGG 1 cut(s) 427
BstENI CCTNNNNNAGG 1 cut(s) 384
BstF5I GGATG 3 cut(s) 190, 481, 622
BstFNI CGCG 2 cut(s) 915, 950
BstHHI GCGC 1 cut(s) 917
BstKTI GATC 5 cut(s) 16, 367, 454, 692, 877
BstMAI GTCTC 3 cut(s) 52, 132, 779
BstMBI GATC 5 cut(s) 13, 364, 451, 689, 874
BstMWI GCNNNNNNNGC 2 cut(s) 262, 968
BstNI CCWGG 2 cut(s) 387, 607
BstNSI RCATGY 1 cut(s) 753
BstSCI CCNGG 3 cut(s) 385, 605, 612
BstSFI CTRYAG 1 cut(s) 51
BstUI CGCG 2 cut(s) 915, 950
BstV1I GCAGC 2 cut(s) 463, 742
BstV2I GAAGAC 1 cut(s) 837
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
BstZ17I GTATAC 1 cut(s) 396
BsuI GTATCC 1 cut(s) 413
BsuRI GGCC 3 cut(s) 409, 432, 605
BtgI CCRYGG 1 cut(s) 427
BtsCI GGATG 3 cut(s) 190, 481, 622
BtsIMutI CAGTG 1 cut(s) 595
BtuMI TCGCGA 1 cut(s) 950
CaiI CAGNNNCTG 1 cut(s) 872
CciI TCATGA 2 cut(s) 468, 712
CfoI GCGC 1 cut(s) 917
Cfr13I GGNCC 3 cut(s) 407, 628, 910
Csp6I GTAC 2 cut(s) 160, 955
CviAII CATG 4 cut(s) 428, 469, 713, 750
CviQI GTAC 2 cut(s) 160, 955
DdeI CTNAG 2 cut(s) 486, 903
DpnI GATC 5 cut(s) 15, 366, 453, 691, 876
DpnII GATC 5 cut(s) 13, 364, 451, 689, 874
EaeI YGGCCR 1 cut(s) 430
Eam1104I CTCTTC 1 cut(s) 978
EarI CTCTTC 1 cut(s) 978
Eco130I CCWWGG 1 cut(s) 427
Eco47I GGWCC 2 cut(s) 628, 910
Eco88I CYCGRG 2 cut(s) 402, 552
EcoNI CCTNNNNNAGG 1 cut(s) 384
EcoRI GAATTC 2 cut(s) 238, 346
EcoRII CCWGG 2 cut(s) 385, 605
EcoT14I CCWWGG 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 427
Esp3I CGTCTC 2 cut(s) 52, 132
FaeI CATG 4 cut(s) 431, 472, 716, 753
FatI CATG 4 cut(s) 427, 468, 712, 749
FauNDI CATATG 1 cut(s) 522
FblI GTMKAC 2 cut(s) 5, 395
Fnu4HI GCNGC 3 cut(s) 477, 728, 731
FokI GGATG 3 cut(s) 177, 468, 629
Fsp4HI GCNGC 3 cut(s) 477, 728, 731
FspBI CTAG 3 cut(s) 285, 381, 581
GlaI GCGC 1 cut(s) 916
GluI GCNGC 3 cut(s) 477, 728, 731
HaeIII GGCC 3 cut(s) 409, 432, 605
HapII CCGG 3 cut(s) 92, 516, 613
HhaI GCGC 1 cut(s) 917
Hin1II CATG 4 cut(s) 431, 472, 716, 753
Hin6I GCGC 1 cut(s) 915
HinP1I GCGC 1 cut(s) 915
HinfI GANTC 7 cut(s) 64, 86, 460, 490, 848, 869, 945
HpaII CCGG 3 cut(s) 92, 516, 613
HphI GGTGA 3 cut(s) 67, 106, 263
Hpy166II GTNNAC 4 cut(s) 6, 396, 415, 775
Hpy188I TCNGA 6 cut(s) 85, 291, 327, 489, 868, 874
Hpy188III TCNNGA 5 cut(s) 11, 469, 581, 713, 949
Hpy8I GTNNAC 4 cut(s) 6, 396, 415, 775
Hpy99I CGWCG 3 cut(s) 127, 160, 362
HpyAV CCTTC 4 cut(s) 51, 573, 595, 901
HpyCH4III ACNGT 3 cut(s) 112, 590, 936
HpyCH4V TGCA 3 cut(s) 479, 547, 1002
HpyF10VI GCNNNNNNNGC 2 cut(s) 262, 968
HpyF3I CTNAG 2 cut(s) 486, 903
Hsp92II CATG 4 cut(s) 431, 472, 716, 753
HspAI GCGC 1 cut(s) 915
Kzo9I GATC 5 cut(s) 13, 364, 451, 689, 874
LguI GCTCTTC 1 cut(s) 978
LmnI GCTCC 3 cut(s) 178, 609, 665
Lsp1109I GCAGC 2 cut(s) 463, 742
LweI GCATC 2 cut(s) 89, 610
MaeI CTAG 3 cut(s) 285, 381, 581
MaeIII GTNAC 3 cut(s) 73, 94, 244
MalI GATC 5 cut(s) 15, 366, 453, 691, 876
MboI GATC 5 cut(s) 13, 364, 451, 689, 874
MboII GAAGA 7 cut(s) 300, 824, 839, 842, 941, 965, 968
MflI RGATCY 1 cut(s) 451
MhlI GDGCHC 1 cut(s) 712
MlsI TGGCCA 1 cut(s) 432
MluNI TGGCCA 1 cut(s) 432
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 2 cut(s) 350, 593
Mox20I TGGCCA 1 cut(s) 432
MroXI GAANNNNTTC 1 cut(s) 464
MscI TGGCCA 1 cut(s) 432
MseI TTAA 2 cut(s) 723, 938
Msp20I TGGCCA 1 cut(s) 432
MspI CCGG 3 cut(s) 92, 516, 613
MspR9I CCNGG 3 cut(s) 387, 607, 614
MvaI CCWGG 2 cut(s) 387, 607
MvnI CGCG 2 cut(s) 915, 950
MwoI GCNNNNNNNGC 2 cut(s) 262, 968
NciI CCSGG 1 cut(s) 614
NcoI CCATGG 1 cut(s) 427
NdeI CATATG 1 cut(s) 522
NdeII GATC 5 cut(s) 13, 364, 451, 689, 874
NlaIII CATG 4 cut(s) 431, 472, 716, 753
NlaIV GGNNCC 3 cut(s) 453, 514, 611
NmuCI GTSAC 2 cut(s) 73, 94
NruI TCGCGA 1 cut(s) 950
NspI RCATGY 1 cut(s) 753
NspV TTCGAA 1 cut(s) 236
PaeR7I CTCGAG 1 cut(s) 402
PagI TCATGA 2 cut(s) 468, 712
PciI ACATGT 1 cut(s) 749
PciSI GCTCTTC 1 cut(s) 978
PdmI GAANNNNTTC 1 cut(s) 464
PfeI GAWTC 6 cut(s) 86, 460, 490, 848, 869, 945
PflMI CCANNNNNTGG 1 cut(s) 989
PkrI GCNGC 3 cut(s) 478, 729, 732
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PscI ACATGT 1 cut(s) 749
Psp6I CCWGG 2 cut(s) 385, 605
PspGI CCWGG 2 cut(s) 385, 605
PspN4I GGNNCC 3 cut(s) 453, 514, 611
PspPI GGNCC 3 cut(s) 407, 628, 910
PspXI VCTCGAGB 1 cut(s) 402
PstNI CAGNNNCTG 1 cut(s) 872
PsuI RGATCY 1 cut(s) 451
RruI TCGCGA 1 cut(s) 950
RsaI GTAC 2 cut(s) 161, 956
RsaNI GTAC 2 cut(s) 160, 955
SapI GCTCTTC 1 cut(s) 978
SaqAI TTAA 2 cut(s) 723, 938
SatI GCNGC 3 cut(s) 477, 728, 731
Sau3AI GATC 5 cut(s) 13, 364, 451, 689, 874
Sau96I GGNCC 3 cut(s) 407, 628, 910
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 3 cut(s) 387, 607, 614
SduI GDGCHC 1 cut(s) 712
SfaNI GCATC 2 cut(s) 89, 610
SfcI CTRYAG 1 cut(s) 51
Sfr274I CTCGAG 1 cut(s) 402
SfuI TTCGAA 1 cut(s) 236
SinI GGWCC 2 cut(s) 628, 910
SlaI CTCGAG 1 cut(s) 402
SmlI CTYRAG 1 cut(s) 402
SmoI CTYRAG 1 cut(s) 402
SsiI CCGC 4 cut(s) 78, 176, 728, 913
SspMI CTAG 3 cut(s) 285, 381, 581
StyD4I CCNGG 3 cut(s) 385, 605, 612
StyI CCWWGG 1 cut(s) 427
TaaI ACNGT 3 cut(s) 112, 590, 936
TaqI TCGA 7 cut(s) 62, 236, 316, 403, 443, 688, 919
TaqII GACCGA 1 cut(s) 912
TauI GCSGC 1 cut(s) 730
TfiI GAWTC 6 cut(s) 86, 460, 490, 848, 869, 945
Tru1I TTAA 2 cut(s) 723, 938
Tru9I TTAA 2 cut(s) 723, 938
TscAI CASTG 1 cut(s) 595
TseFI GTSAC 2 cut(s) 73, 94
TseI GCWGC 2 cut(s) 476, 730
Tsp45I GTSAC 2 cut(s) 73, 94
TspDTI ATGAA 4 cut(s) 170, 457, 473, 539
TspGWI ACGGA 5 cut(s) 34, 232, 346, 432, 797
TspRI CASTG 1 cut(s) 595
Van91I CCANNNNNTGG 1 cut(s) 989
VpaK11BI GGWCC 2 cut(s) 628, 910
XagI CCTNNNNNAGG 1 cut(s) 384
XapI RAATTY 3 cut(s) 238, 346, 445
XbaI TCTAGA 1 cut(s) 580
XceI RCATGY 1 cut(s) 753
XhoI CTCGAG 1 cut(s) 402
XmiI GTMKAC 2 cut(s) 5, 395
XmnI GAANNNNTTC 1 cut(s) 464
XspI CTAG 3 cut(s) 285, 381, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.