Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007084

Physical Location & Seq

Genomic Coordinates Forward (+)

37291737 .. 37298372

Gene Structure 6636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1318600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCAAACGTTGGGCGTAAAAAGCAAACGTTCAAAAATTAAAAACCAAAGCGCACCAAATTCCCAAATTTCCCCGCCACTGCCCGCAGACACCACCATGACCATAGATCCCAACCACACCACCGCTTCAGCCGCCGCCAACATGGCCACAGCCGGAGCCGCCGCACACAACACAACCACGACGAGACCGGTAAGACCTGCCGTATCATCTCCTCTTCCTTCTAATCTTTATGCAGCCCCATCCCTCCAAATTCGAACCCAATCGCCATCATCATCACCAGTAGCACCAGCAGCTGCTAATCATCAGGGGGTTTTGTACCCACTGGCTTCCTCTGGCCGAGGCTTTATTCCTCGGCCCATTCGTCCCGCCGCCGCTGCCGGAGGTGAACCCGCACTCATTGTGGCCAACGCCGGAGCTGTGTACCCATCTCGGCCCCTACTCAATTTCCCTCCTCAGCAGCCTATTCCTGTGCATTTGATAAGACCCAACTACAGCTTAGCACCGTCTCCTCTTCCTCCTCCTATTAGGGGCCTTCCCCTTTCCTCTGCTCCTCCTGAGGTTGCTCCATCTTCAGTTCCTGACATCAATGGTTTTAAAGACATGAGGGATAAAAGCAAAGATGATAACTTAGCTGTCATTAGAGGTCGAAAGGTCAGGATGACAGATGGAGCTTCTCTATATGTGCACTGTCGGTCATGGTTGAGGAACGGTTTTCCTGAAGAAATTCAGCCCCAATATGGTGATGCTGTAAGGTCTCTTCCGAGACCTTCACCAATACCTATGGCAAGTGCTACTCTTCAAAAGGAGGGAGGTGAGGCAGAGGAAAAAGAAGAAAAAGGAGATGATAACAAGGACGAGGCTGAGGAACACATTGAATGTTTATCACCACATGATCTGTTAGAAAGACATGTCAAACGTGCCAGAAAAGTTCGAGCACGATTAAGAGAGGAACGCTTACAGCGAATTGCAAGGTACAAGTCTAGGCTTGCTCTTCTCCTTCCTCCCTTGGTAGAACAGTTCAGAAATGATCTAGCTTCCGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIN37

Protein Analysis

349

Amino Acids

37.54

Weight (kDa)

9.84

Isoelectric Point (pI)

69.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04930 AT1G04930 AT1G04930 AT2G32840 AT2G32840
fragaria_vesca	FvH4_7g00160 FvH4_7g00160 FvH4_7g00160
malus_domestica	MD02G1318600.v1.1 MD07G1002600.v1.1
prunus_persica	Prupe.2G004100_v2.0.a1 Prupe.2G004100_v2.0.a1 Prupe.2G004100_v2.0.a1 Prupe.2G004100_v2.0.a1
pyrus_communis	pycom02g26690 pycom07g00260
rosa_chinensis	RchiOBHm_Chr1g0313411
rosa_laevigata	RLG00000030799
rosa_multiflora	Rmu_sc0000035.1_g000031 Rmu_sc0000035.1_g000045
rosa_roxburghii	Rroxscaffold_4G00332210
rosa_rugosa	RorugPtG0004800
rosa_samantha	Rh1AG003400 Rh1CG001300
rosa_wichuraiana	Rw1G000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	205
AccIII	TCCGGA	1 cut(s)	1037
AclI	AACGTT	2 cut(s)	8, 28
AclWI	GGATC	1 cut(s)	101
AcoI	YGGCCR	3 cut(s)	144, 334, 402
AcsI	RAATTY	4 cut(s)	58, 66, 249, 723
AcuI	CTGAAG	3 cut(s)	111, 555, 738
AfaI	GTAC	3 cut(s)	317, 422, 974
AfiI	CCNNNNNNNGG	2 cut(s)	527, 737
AflIII	ACRYGT	1 cut(s)	907
AgeI	ACCGGT	1 cut(s)	187
AgsI	TTSAA	3 cut(s)	33, 800, 875
AluBI	AGCT	6 cut(s)	293, 416, 495, 632, 671, 1034
AluI	AGCT	6 cut(s)	293, 416, 495, 632, 671, 1034
Alw21I	GWGCWC	2 cut(s)	687, 937
Alw26I	GTCTC	4 cut(s)	178, 510, 757, 759
Alw44I	GTGCAC	1 cut(s)	683
AlwI	GGATC	1 cut(s)	101
AlwNI	CAGNNNCTG	2 cut(s)	293, 578
Aor13HI	TCCGGA	1 cut(s)	1037
AoxI	GGCC	6 cut(s)	144, 334, 353, 402, 431, 529
ApaLI	GTGCAC	1 cut(s)	683
ApeKI	GCWGC	5 cut(s)	233, 290, 293, 374, 457
ApoI	RAATTY	4 cut(s)	58, 66, 249, 723
AsiGI	ACCGGT	1 cut(s)	187
Asp700I	GAANNNNTTC	1 cut(s)	723
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	3 cut(s)	354, 432, 529
AsuHPI	GGTGA	6 cut(s)	267, 395, 752, 762, 824, 876
AsuII	TTCGAA	1 cut(s)	253
AxyI	CCTNAGG	1 cut(s)	555
BaeGI	GKGCMC	1 cut(s)	687
BalI	TGGCCA	2 cut(s)	146, 404
BarI	GAAGNNNNNNTAC	2 cut(s)	741, 773
Bbv12I	GWGCWC	2 cut(s)	687, 937
BbvCI	CCTCAGC	2 cut(s)	453, 861
BbvI	GCAGC	5 cut(s)	245, 280, 302, 361, 469
BccI	CCATC	5 cut(s)	247, 274, 433, 574, 659
BceAI	ACGGC	1 cut(s)	185
BcoDI	GTCTC	4 cut(s)	178, 510, 757, 759
BfaI	CTAG	2 cut(s)	981, 1031
BfmI	CTRYAG	1 cut(s)	490
BfuAI	ACCTGC	1 cut(s)	205
BglI	GCCNNNNNGGC	1 cut(s)	143
BlpI	GCTNAGC	1 cut(s)	496
BmgT120I	GGNCC	3 cut(s)	354, 432, 529
BmiI	GGNNCC	3 cut(s)	157, 434, 530
BmsI	GCATC	1 cut(s)	733
Bpu10I	CCTNAGC	2 cut(s)	453, 861
Bpu1102I	GCTNAGC	1 cut(s)	496
Bpu14I	TTCGAA	1 cut(s)	253
BsaI	GGTCTC	3 cut(s)	178, 757, 759
BsaJI	CCNNGG	3 cut(s)	337, 350, 1005
BsaWI	WCCGGW	2 cut(s)	187, 1037
Bsc4I	CCNNNNNNNGG	2 cut(s)	527, 737
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	2 cut(s)	278, 327
Bse21I	CCTNAGG	1 cut(s)	555
BseAI	TCCGGA	1 cut(s)	1037
BseDI	CCNNGG	3 cut(s)	337, 350, 1005
BseGI	GGATG	2 cut(s)	239, 663
BseLI	CCNNNNNNNGG	2 cut(s)	527, 737
BseMII	CTCAG	3 cut(s)	467, 546, 852
BseNI	ACTGG	2 cut(s)	278, 327
BseRI	GAGGAG	5 cut(s)	201, 441, 498, 507, 540
BseSI	GKGCMC	1 cut(s)	687
BseXI	GCAGC	5 cut(s)	245, 280, 302, 361, 469
BshFI	GGCC	6 cut(s)	146, 336, 355, 404, 433, 531
BshTI	ACCGGT	1 cut(s)	187
BsiHKAI	GWGCWC	2 cut(s)	687, 937
BsiSI	CCGG	5 cut(s)	153, 188, 378, 411, 1038
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	2 cut(s)	527, 737
BsmAI	GTCTC	4 cut(s)	178, 510, 757, 759
BsmBI	CGTCTC	1 cut(s)	510
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	6 cut(s)	146, 336, 355, 404, 433, 531
Bso31I	GGTCTC	3 cut(s)	178, 757, 759
Bsp119I	TTCGAA	1 cut(s)	253
Bsp1286I	GDGCHC	2 cut(s)	687, 937
Bsp13I	TCCGGA	1 cut(s)	1037
Bsp143I	GATC	3 cut(s)	106, 892, 1027
Bsp1720I	GCTNAGC	1 cut(s)	496
BspANI	GGCC	6 cut(s)	146, 336, 355, 404, 433, 531
BspCNI	CTCAG	3 cut(s)	466, 547, 853
BspEI	TCCGGA	1 cut(s)	1037
BspLI	GGNNCC	3 cut(s)	157, 434, 530
BspMI	ACCTGC	1 cut(s)	205
BspPI	GGATC	1 cut(s)	101
BspQI	GCTCTTC	1 cut(s)	996
BspT104I	TTCGAA	1 cut(s)	253
BspTNI	GGTCTC	3 cut(s)	178, 757, 759
BsrFI	RCCGGY	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	278, 327
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	3 cut(s)	337, 350, 1005
BssMI	GATC	3 cut(s)	106, 892, 1027
BssT1I	CCWWGG	1 cut(s)	1005
Bst4CI	ACNGT	4 cut(s)	504, 689, 710, 1017
Bst6I	CTCTTC	5 cut(s)	219, 516, 762, 801, 996
BstBI	TTCGAA	1 cut(s)	253
BstC8I	GCNNGC	2 cut(s)	84, 987
BstDEI	CTNAG	5 cut(s)	453, 496, 555, 628, 861
BstF5I	GGATG	2 cut(s)	239, 663
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	3 cut(s)	109, 895, 1030
BstMAI	GTCTC	4 cut(s)	178, 510, 757, 759
BstMBI	GATC	3 cut(s)	106, 892, 1027
BstMWI	GCNNNNNNNGC	6 cut(s)	21, 131, 143, 158, 290, 374
BstNSI	RCATGY	1 cut(s)	911
BstSFI	CTRYAG	1 cut(s)	490
BstSLI	GKGCMC	1 cut(s)	687
BstV1I	GCAGC	5 cut(s)	245, 280, 302, 361, 469
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
Bsu36I	CCTNAGG	1 cut(s)	555
BsuRI	GGCC	6 cut(s)	146, 336, 355, 404, 433, 531
BtsCI	GGATG	2 cut(s)	239, 663
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	3 cut(s)	77, 320, 685
BveI	ACCTGC	1 cut(s)	205
Cac8I	GCNNGC	2 cut(s)	84, 987
CaiI	CAGNNNCTG	2 cut(s)	293, 578
CfoI	GCGC	1 cut(s)	53
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	3 cut(s)	354, 432, 529
Csp6I	GTAC	3 cut(s)	316, 421, 973
CspAI	ACCGGT	1 cut(s)	187
CviAII	CATG	6 cut(s)	97, 142, 601, 696, 890, 908
CviQI	GTAC	3 cut(s)	316, 421, 973
DdeI	CTNAG	5 cut(s)	453, 496, 555, 628, 861
DpnI	GATC	3 cut(s)	108, 894, 1029
DpnII	GATC	3 cut(s)	106, 892, 1027
DraI	TTTAAA	1 cut(s)	595
EaeI	YGGCCR	3 cut(s)	144, 334, 402
Eam1104I	CTCTTC	5 cut(s)	219, 516, 762, 801, 996
EarI	CTCTTC	5 cut(s)	219, 516, 762, 801, 996
Eco130I	CCWWGG	1 cut(s)	1005
Eco31I	GGTCTC	3 cut(s)	178, 757, 759
Eco57I	CTGAAG	3 cut(s)	111, 555, 738
Eco81I	CCTNAGG	1 cut(s)	555
EcoO109I	RGGNCCY	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	1005
ErhI	CCWWGG	1 cut(s)	1005
Esp3I	CGTCTC	1 cut(s)	510
FaeI	CATG	6 cut(s)	100, 145, 604, 699, 893, 911
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	6 cut(s)	96, 141, 600, 695, 889, 907
FauI	CCCGC	4 cut(s)	81, 91, 373, 397
FokI	GGATG	2 cut(s)	226, 670
FspBI	CTAG	2 cut(s)	981, 1031
GlaI	GCGC	1 cut(s)	52
HaeIII	GGCC	6 cut(s)	146, 336, 355, 404, 433, 531
HapII	CCGG	5 cut(s)	153, 188, 378, 411, 1038
HhaI	GCGC	1 cut(s)	53
Hin1II	CATG	6 cut(s)	100, 145, 604, 699, 893, 911
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HpaII	CCGG	5 cut(s)	153, 188, 378, 411, 1038
HphI	GGTGA	6 cut(s)	267, 395, 752, 762, 824, 876
Hpy166II	GTNNAC	3 cut(s)	386, 421, 685
Hpy188I	TCNGA	2 cut(s)	762, 1022
Hpy188III	TCNNGA	5 cut(s)	554, 578, 655, 716, 1038
Hpy8I	GTNNAC	3 cut(s)	386, 421, 685
Hpy99I	CGWCG	1 cut(s)	184
HpyAV	CCTTC	4 cut(s)	228, 542, 777, 1007
HpyCH4III	ACNGT	4 cut(s)	504, 689, 710, 1017
HpyCH4IV	ACGT	3 cut(s)	8, 28, 916
HpyCH4V	TGCA	5 cut(s)	4, 233, 472, 685, 968
HpyF10VI	GCNNNNNNNGC	6 cut(s)	21, 131, 143, 158, 290, 374
HpyF3I	CTNAG	5 cut(s)	453, 496, 555, 628, 861
HpySE526I	ACGT	3 cut(s)	8, 28, 916
Hsp92II	CATG	6 cut(s)	100, 145, 604, 699, 893, 911
HspAI	GCGC	1 cut(s)	51
Kpn2I	TCCGGA	1 cut(s)	1037
Kzo9I	GATC	3 cut(s)	106, 892, 1027
LguI	GCTCTTC	1 cut(s)	996
LmnI	GCTCC	5 cut(s)	155, 413, 553, 568, 668
Lsp1109I	GCAGC	5 cut(s)	245, 280, 302, 361, 469
LweI	GCATC	1 cut(s)	733
MaeI	CTAG	2 cut(s)	981, 1031
MaeII	ACGT	3 cut(s)	8, 28, 916
MalI	GATC	3 cut(s)	108, 894, 1029
MboI	GATC	3 cut(s)	106, 892, 1027
MboII	GAAGA	8 cut(s)	206, 503, 561, 731, 749, 788, 842, 983
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	2 cut(s)	687, 937
MlsI	TGGCCA	2 cut(s)	146, 404
MluCI	AATT	7 cut(s)	36, 58, 66, 249, 442, 723, 963
MluNI	TGGCCA	2 cut(s)	146, 404
Mox20I	TGGCCA	2 cut(s)	146, 404
MroI	TCCGGA	1 cut(s)	1037
MroXI	GAANNNNTTC	1 cut(s)	723
MscI	TGGCCA	2 cut(s)	146, 404
MseI	TTAA	3 cut(s)	39, 594, 941
MslI	CAYNNNNRTG	1 cut(s)	95
Msp20I	TGGCCA	2 cut(s)	146, 404
MspA1I	CMGCKG	2 cut(s)	293, 374
MspI	CCGG	5 cut(s)	153, 188, 378, 411, 1038
MwoI	GCNNNNNNNGC	6 cut(s)	21, 131, 143, 158, 290, 374
NdeII	GATC	3 cut(s)	106, 892, 1027
NlaIII	CATG	6 cut(s)	100, 145, 604, 699, 893, 911
NlaIV	GGNNCC	3 cut(s)	157, 434, 530
NmeAIII	GCCGAG	3 cut(s)	331, 362, 409
NspI	RCATGY	1 cut(s)	911
NspV	TTCGAA	1 cut(s)	253
PciI	ACATGT	1 cut(s)	907
PciSI	GCTCTTC	1 cut(s)	996
PcsI	WCGNNNNNNNCGW	2 cut(s)	358, 958
PdmI	GAANNNNTTC	1 cut(s)	723
PinAI	ACCGGT	1 cut(s)	187
PscI	ACATGT	1 cut(s)	907
Psp1406I	AACGTT	2 cut(s)	8, 28
PspN4I	GGNNCC	3 cut(s)	157, 434, 530
PspPI	GGNCC	3 cut(s)	354, 432, 529
PstNI	CAGNNNCTG	2 cut(s)	293, 578
PsuI	RGATCY	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	3 cut(s)	317, 422, 974
RsaNI	GTAC	3 cut(s)	316, 421, 973
RseI	CAYNNNNRTG	1 cut(s)	95
SapI	GCTCTTC	1 cut(s)	996
SaqAI	TTAA	3 cut(s)	39, 594, 941
Sau3AI	GATC	3 cut(s)	106, 892, 1027
Sau96I	GGNCC	3 cut(s)	354, 432, 529
SduI	GDGCHC	2 cut(s)	687, 937
SfaNI	GCATC	1 cut(s)	733
SfcI	CTRYAG	1 cut(s)	490
SfuI	TTCGAA	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	95
Sse9I	AATT	7 cut(s)	36, 58, 66, 249, 442, 723, 963
SspMI	CTAG	2 cut(s)	981, 1031
StyI	CCWWGG	1 cut(s)	1005
TaaI	ACNGT	4 cut(s)	504, 689, 710, 1017
TaiI	ACGT	3 cut(s)	11, 31, 919
TaqI	TCGA	3 cut(s)	253, 646, 931
TaqII	GACCGA	1 cut(s)	681
TasI	AATT	7 cut(s)	36, 58, 66, 249, 442, 723, 963
TauI	GCSGC	6 cut(s)	134, 137, 161, 164, 371, 374
Tru1I	TTAA	3 cut(s)	39, 594, 941
Tru9I	TTAA	3 cut(s)	39, 594, 941
TscAI	CASTG	3 cut(s)	84, 327, 692
TseI	GCWGC	5 cut(s)	233, 290, 293, 374, 457
TspRI	CASTG	3 cut(s)	84, 327, 692
VneI	GTGCAC	1 cut(s)	683
XapI	RAATTY	4 cut(s)	58, 66, 249, 723
XceI	RCATGY	1 cut(s)	911
XmnI	GAANNNNTTC	1 cut(s)	723
XspI	CTAG	2 cut(s)	981, 1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.