Rh1CG001300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0007084
Physical Location & Seq
Forward (+)
123599 .. 127663
4065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG001300.1

Sequence Viewer

Length: 384 bp
ATGAACAATGTTTTCAGAGGTGTTAACCTGGTGGCTGGAAAATGCCCGAGGCAGCTGGCAGATAAGCGTACGCTTCCATCTACACGATATGGTGATGCTACAAGGTCTCTTCCAAAACCTTCACCCATACCTATGGCAAGTGCGACTCCGCCAAAGAAGGAAGAAGGCGATAAAAAAGAAGACATTGAGGACAAGGATGAGGAATCCCTTGAACATGTATCACCAGAAGATCTGTTAAAAAGACATGTCAAACGTGCTAGAAAGGTTCGAGCACGATTAAGAGAAGAACGTTTGCGGCGCATTGCAAGGTACAAGTCTAGGCTTGCTCTTCTCCTTCCTCCACTGGTAGAACAGTTCCGAAATGATCTAGCTGCTGGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIN37

Protein Analysis

127

Amino Acids

14.52

Weight (kDa)

10.11

Isoelectric Point (pI)

62.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIN37 PF15306 33 - 111 3.7e-07 LIN37
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 149, 295
AclI AACGTT 1 cut(s) 289
AfaI GTAC 2 cut(s) 70, 311
AflIII ACRYGT 2 cut(s) 214, 244
AgsI TTSAA 1 cut(s) 212
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 2 cut(s) 55, 371
AluI AGCT 2 cut(s) 55, 371
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 1 cut(s) 111
Ama87I CYCGRG 1 cut(s) 46
ApeKI GCWGC 2 cut(s) 52, 371
AspLEI GCGC 1 cut(s) 300
AsuHPI GGTGA 3 cut(s) 104, 114, 213
AvaI CYCGRG 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 274
BbvI GCAGC 2 cut(s) 64, 358
BccI CCATC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 3 cut(s) 258, 318, 368
BglII AGATCT 1 cut(s) 229
BisI GCNGC 3 cut(s) 53, 296, 372
BlsI GCNGC 3 cut(s) 54, 297, 373
Bme1390I CCNGG 1 cut(s) 29
BmeT110I CYCGRG 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 29
BmsI GCATC 1 cut(s) 85
BpiI GAAGAC 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 348
Bse3DI GCAATG 1 cut(s) 300
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 1 cut(s) 202
BseMI GCAATG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 348
BseXI GCAGC 2 cut(s) 64, 358
BsiHKAI GWGCWC 1 cut(s) 274
BsiHKCI CYCGRG 1 cut(s) 46
BsiWI CGTACG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 111
Bso31I GGTCTC 1 cut(s) 111
BsoBI CYCGRG 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 2 cut(s) 229, 364
BspACI CCGC 2 cut(s) 149, 295
BspQI GCTCTTC 1 cut(s) 333
BspTNI GGTCTC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 300
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 2 cut(s) 229, 364
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 354
Bst6I CTCTTC 2 cut(s) 114, 333
BstC8I GCNNGC 2 cut(s) 57, 324
BstF5I GGATG 1 cut(s) 202
BstHHI GCGC 1 cut(s) 300
BstKTI GATC 2 cut(s) 232, 367
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 2 cut(s) 229, 364
BstNI CCWGG 1 cut(s) 29
BstNSI RCATGY 2 cut(s) 218, 248
BstSCI CCNGG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 64, 358
BstV2I GAAGAC 1 cut(s) 186
BstX2I RGATCY 1 cut(s) 229
BstXI CCANNNNNNTGG 1 cut(s) 133
BstYI RGATCY 1 cut(s) 229
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 341
Cac8I GCNNGC 2 cut(s) 57, 324
CfoI GCGC 1 cut(s) 300
CsiI ACCWGGT 1 cut(s) 27
Csp6I GTAC 2 cut(s) 69, 310
CviAII CATG 2 cut(s) 215, 245
CviJI RGCY 4 cut(s) 35, 55, 322, 371
CviKI_1 RGCY 4 cut(s) 35, 55, 322, 371
CviQI GTAC 2 cut(s) 69, 310
DpnI GATC 2 cut(s) 231, 366
DpnII GATC 2 cut(s) 229, 364
Eam1104I CTCTTC 2 cut(s) 114, 333
EarI CTCTTC 2 cut(s) 114, 333
EciI GGCGGA 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 111
Eco88I CYCGRG 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 27
FaeI CATG 2 cut(s) 218, 248
FaiI YATR 5 cut(s) 90, 128, 134, 216, 246
FatI CATG 2 cut(s) 214, 244
Fnu4HI GCNGC 3 cut(s) 53, 296, 372
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 3 cut(s) 53, 296, 372
FspBI CTAG 3 cut(s) 258, 318, 368
GlaI GCGC 1 cut(s) 299
GluI GCNGC 3 cut(s) 53, 296, 372
HhaI GCGC 1 cut(s) 300
Hin1II CATG 2 cut(s) 218, 248
Hin6I GCGC 1 cut(s) 298
HinP1I GCGC 1 cut(s) 298
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 2 cut(s) 145, 203
HpaI GTTAAC 1 cut(s) 25
HphI GGTGA 3 cut(s) 104, 114, 213
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 17, 359
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 4 cut(s) 129, 151, 158, 344
HpyCH4III ACNGT 1 cut(s) 354
HpyCH4IV ACGT 2 cut(s) 253, 289
HpyCH4V TGCA 1 cut(s) 305
HpySE526I ACGT 2 cut(s) 253, 289
Hsp92II CATG 2 cut(s) 218, 248
HspAI GCGC 1 cut(s) 298
KspAI GTTAAC 1 cut(s) 25
Kzo9I GATC 2 cut(s) 229, 364
LguI GCTCTTC 1 cut(s) 333
LpnPI CCDG 7 cut(s) 14, 21, 41, 41, 237, 329, 360
Lsp1109I GCAGC 2 cut(s) 64, 358
LweI GCATC 1 cut(s) 85
MabI ACCWGGT 1 cut(s) 27
MaeI CTAG 3 cut(s) 258, 318, 368
MaeII ACGT 2 cut(s) 253, 289
MalI GATC 2 cut(s) 231, 366
MboI GATC 2 cut(s) 229, 364
MboII GAAGA 6 cut(s) 101, 173, 191, 239, 296, 320
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 1 cut(s) 379
MlyI GAGTC 1 cut(s) 139
MnlI CCTC 5 cut(s) 11, 42, 181, 193, 348
MseI TTAA 3 cut(s) 24, 236, 278
MslI CAYNNNNRTG 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 55
MspR9I CCNGG 1 cut(s) 29
MvaI CCWGG 1 cut(s) 29
NdeII GATC 2 cut(s) 229, 364
NlaIII CATG 2 cut(s) 218, 248
NspI RCATGY 2 cut(s) 218, 248
PciI ACATGT 2 cut(s) 214, 244
PciSI GCTCTTC 1 cut(s) 333
PfeI GAWTC 1 cut(s) 203
Pfl23II CGTACG 1 cut(s) 68
PkrI GCNGC 3 cut(s) 54, 297, 373
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PscI ACATGT 2 cut(s) 214, 244
Psp1406I AACGTT 1 cut(s) 289
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspLI CGTACG 1 cut(s) 68
PsuI RGATCY 1 cut(s) 229
PvuII CAGCTG 1 cut(s) 55
RsaI GTAC 2 cut(s) 70, 311
RsaNI GTAC 2 cut(s) 69, 310
RseI CAYNNNNRTG 1 cut(s) 131
SapI GCTCTTC 1 cut(s) 333
SaqAI TTAA 3 cut(s) 24, 236, 278
SatI GCNGC 3 cut(s) 53, 296, 372
Sau3AI GATC 2 cut(s) 229, 364
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 1 cut(s) 274
SexAI ACCWGGT 1 cut(s) 27
SfaNI GCATC 1 cut(s) 85
SmiMI CAYNNNNRTG 1 cut(s) 131
Sse9I AATT 1 cut(s) 379
SsiI CCGC 2 cut(s) 149, 295
SspMI CTAG 3 cut(s) 258, 318, 368
StyD4I CCNGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 354
TaiI ACGT 2 cut(s) 256, 292
TaqI TCGA 1 cut(s) 268
TasI AATT 1 cut(s) 379
TauI GCSGC 1 cut(s) 298
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 3 cut(s) 24, 236, 278
Tru9I TTAA 3 cut(s) 24, 236, 278
TscAI CASTG 1 cut(s) 348
TseI GCWGC 2 cut(s) 52, 371
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 348
XceI RCATGY 2 cut(s) 218, 248
XspI CTAG 3 cut(s) 258, 318, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.