Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007084

Physical Location & Seq

Genomic Coordinates Reverse (-)

272660 .. 278120

Gene Structure 5461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g00260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCCATAGATCCCAGCCACACCACCGCTTCAGCCGCCGCCGTCACGGCCACGGCCGGAGCTGCCGCTCCCAACACACCCACGACGAGGCCCGTAAGACCCGCCGTATCATCTCCTCTTCCTCCTAATCTTTACGCAGCCCAATCCCTCCAAATTCGGACCCAATCGCCATCATCTTCACCATTAGCATCAGCAGCTGCTAATCATCAGGGGGTTCTGTACCCACTGGCTTCCTCAGGCCGAGGCTTCATTCCCCGGCCCATTCGCCCCGCCGCCGCTGCCGGAGGTGAACCCCCAGTCACTGTGGCCAACGCAGGAGCTTCGTACCCATCTCGGCCCCTTCTGAATTTCCCTTCGCAGCAGCCTATTTCTGTGCATTTGATGAGATCCAACTACAGCTTAGCACCTTCTCCTCTTCCTCCTCCTATTAGGGGCCTTCCCCTTTCTTCTGCTGCTCCTGAGGTTGCTCCATCTTCAGTTCCTGACAGCAATGGTTTTAAAGACATGAGGGATAAAAACAAAGATGATAACTTAGCTGTCATTAGAGGTCGAAAAGTCAGGGTGACAGATGGAGCTTCTCTATACGTGCACTGTCGGTCATGGTTGAGGAACGGTTTTCCTGAAGAAATTCAGCCACAATATGGTGATGCTGTAAGGTCTCTTCCTAAACCTTCACCAATACCTATGGCAAGTGCTACTCTTCCAAAGAAGGAGGGGGGTGAAGCAGAAGAAAAAGGAGATGATAACAAGGACGAGGCTGAGGAACACATTGAGCGTTTATCAACACATGATCTGTTAAAAAGACATGTCAAACGCGCCAGAAAGGTTCGAGCACGATTAAGAGAAGAACGCTTACAGCGAATTGCAAGGTACAAGTCTAGGCTTGCGCTTCTCCTTCCTCCCTTGGTAGAACAGTTCAGAAATGATCTAGCTTCAGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIN37

Protein Analysis

315

Amino Acids

33.69

Weight (kDa)

10.07

Isoelectric Point (pI)

64.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04930 AT1G04930 AT1G04930 AT2G32840 AT2G32840
fragaria_vesca	FvH4_7g00160 FvH4_7g00160 FvH4_7g00160
malus_domestica	MD02G1318600.v1.1 MD07G1002600.v1.1
prunus_persica	Prupe.2G004100_v2.0.a1 Prupe.2G004100_v2.0.a1 Prupe.2G004100_v2.0.a1 Prupe.2G004100_v2.0.a1
pyrus_communis	pycom02g26690 pycom07g00260
rosa_chinensis	RchiOBHm_Chr1g0313411
rosa_laevigata	RLG00000030799
rosa_multiflora	Rmu_sc0000035.1_g000031 Rmu_sc0000035.1_g000045
rosa_roxburghii	Rroxscaffold_4G00332210
rosa_rugosa	RorugPtG0004800
rosa_samantha	Rh1AG003400 Rh1CG001300
rosa_wichuraiana	Rw1G000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	641
AccBSI	CCGCTC	1 cut(s)	68
AccII	CGCG	1 cut(s)	816
AciI	CCGC	8 cut(s)	27, 36, 39, 66, 102, 270, 273, 276
AclWI	GGATC	2 cut(s)	5, 381
AcoI	YGGCCR	4 cut(s)	3, 48, 54, 306
AcsI	RAATTY	3 cut(s)	153, 346, 627
AcuI	CTGAAG	4 cut(s)	15, 459, 642, 918
AfaI	GTAC	3 cut(s)	221, 326, 872
AfiI	CCNNNNNNNGG	3 cut(s)	87, 431, 641
AflIII	ACRYGT	1 cut(s)	805
AluBI	AGCT	7 cut(s)	62, 197, 320, 399, 536, 575, 932
AluI	AGCT	7 cut(s)	62, 197, 320, 399, 536, 575, 932
Alw21I	GWGCWC	2 cut(s)	591, 835
Alw26I	GTCTC	1 cut(s)	663
Alw44I	GTGCAC	1 cut(s)	587
AlwI	GGATC	2 cut(s)	5, 381
AlwNI	CAGNNNCTG	3 cut(s)	197, 302, 482
AoxI	GGCC	9 cut(s)	3, 48, 54, 89, 238, 257, 306, 335, 433
ApaLI	GTGCAC	1 cut(s)	587
ApeKI	GCWGC	8 cut(s)	62, 137, 194, 197, 278, 358, 361, 452
ApoI	RAATTY	3 cut(s)	153, 346, 627
Asp700I	GAANNNNTTC	1 cut(s)	627
AspLEI	GCGC	2 cut(s)	818, 889
AspS9I	GGNCC	5 cut(s)	90, 159, 258, 336, 433
AsuC2I	CCSGG	1 cut(s)	256
AsuHPI	GGTGA	6 cut(s)	171, 299, 574, 656, 666, 731
AvaII	GGWCC	1 cut(s)	159
AxyI	CCTNAGG	2 cut(s)	235, 459
BaeGI	GKGCMC	1 cut(s)	591
BalI	TGGCCA	2 cut(s)	5, 308
BarI	GAAGNNNNNNTAC	4 cut(s)	645, 677, 837, 869
Bbv12I	GWGCWC	2 cut(s)	591, 835
BbvCI	CCTCAGC	1 cut(s)	759
BbvI	GCAGC	8 cut(s)	49, 149, 184, 206, 265, 370, 373, 439
BccI	CCATC	4 cut(s)	178, 337, 478, 563
BceAI	ACGGC	4 cut(s)	26, 63, 69, 89
BcgI	CGANNNNNNTGC	2 cut(s)	303, 337
BcnI	CCSGG	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	663
BfaI	CTAG	2 cut(s)	879, 929
BfmI	CTRYAG	1 cut(s)	394
BglI	GCCNNNNNGGC	1 cut(s)	47
BlpI	GCTNAGC	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	256
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	5 cut(s)	90, 159, 258, 336, 433
BmiI	GGNNCC	3 cut(s)	161, 338, 434
BmrFI	CCNGG	1 cut(s)	256
BmrI	ACTGGG	1 cut(s)	290
BmsI	GCATC	2 cut(s)	197, 637
BmuI	ACTGGG	1 cut(s)	290
Bpu10I	CCTNAGC	1 cut(s)	759
Bpu1102I	GCTNAGC	1 cut(s)	400
BpuMI	CCSGG	1 cut(s)	256
BsaAI	YACGTR	1 cut(s)	586
BsaI	GGTCTC	1 cut(s)	663
BsaJI	CCNNGG	4 cut(s)	51, 241, 254, 903
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 431, 641
Bse1I	ACTGG	2 cut(s)	231, 296
Bse21I	CCTNAGG	2 cut(s)	235, 459
Bse3DI	GCAATG	1 cut(s)	496
BseDI	CCNNGG	4 cut(s)	51, 241, 254, 903
BseLI	CCNNNNNNNGG	3 cut(s)	87, 431, 641
BseMI	GCAATG	1 cut(s)	496
BseMII	CTCAG	3 cut(s)	249, 450, 750
BseNI	ACTGG	2 cut(s)	231, 296
BseRI	GAGGAG	3 cut(s)	105, 402, 411
BseSI	GKGCMC	1 cut(s)	591
BseX3I	CGGCCG	1 cut(s)	54
BseXI	GCAGC	8 cut(s)	49, 149, 184, 206, 265, 370, 373, 439
BseYI	CCCAGC	1 cut(s)	14
Bsh1236I	CGCG	1 cut(s)	816
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	9 cut(s)	5, 50, 56, 91, 240, 259, 308, 337, 435
BsiEI	CGRYCG	1 cut(s)	57
BsiHKAI	GWGCWC	2 cut(s)	591, 835
BsiSI	CCGG	3 cut(s)	57, 256, 282
BslI	CCNNNNNNNGG	3 cut(s)	87, 431, 641
BsmAI	GTCTC	1 cut(s)	663
BsnI	GGCC	9 cut(s)	5, 50, 56, 91, 240, 259, 308, 337, 435
Bso31I	GGTCTC	1 cut(s)	663
Bsp1286I	GDGCHC	2 cut(s)	591, 835
Bsp143I	GATC	4 cut(s)	10, 386, 790, 925
Bsp1720I	GCTNAGC	1 cut(s)	400
BspACI	CCGC	8 cut(s)	27, 36, 39, 66, 102, 270, 273, 276
BspANI	GGCC	9 cut(s)	5, 50, 56, 91, 240, 259, 308, 337, 435
BspCNI	CTCAG	3 cut(s)	248, 451, 751
BspFNI	CGCG	1 cut(s)	816
BspLI	GGNNCC	3 cut(s)	161, 338, 434
BspPI	GGATC	2 cut(s)	5, 381
BspTNI	GGTCTC	1 cut(s)	663
BsrBI	CCGCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	496
BsrI	ACTGG	2 cut(s)	231, 296
BssECI	CCNNGG	4 cut(s)	51, 241, 254, 903
BssMI	GATC	4 cut(s)	10, 386, 790, 925
BssT1I	CCWWGG	1 cut(s)	903
Bst4CI	ACNGT	4 cut(s)	304, 593, 614, 915
Bst6I	CTCTTC	4 cut(s)	123, 420, 666, 705
BstBAI	YACGTR	1 cut(s)	586
BstC8I	GCNNGC	1 cut(s)	885
BstDEI	CTNAG	5 cut(s)	235, 400, 459, 532, 759
BstDSI	CCRYGG	1 cut(s)	51
BstFNI	CGCG	1 cut(s)	816
BstHHI	GCGC	2 cut(s)	818, 889
BstKTI	GATC	4 cut(s)	13, 389, 793, 928
BstMAI	GTCTC	1 cut(s)	663
BstMBI	GATC	4 cut(s)	10, 386, 790, 925
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 47, 62, 194, 278
BstNSI	RCATGY	1 cut(s)	809
BstSCI	CCNGG	1 cut(s)	254
BstSFI	CTRYAG	1 cut(s)	394
BstSLI	GKGCMC	1 cut(s)	591
BstUI	CGCG	1 cut(s)	816
BstV1I	GCAGC	8 cut(s)	49, 149, 184, 206, 265, 370, 373, 439
BstX2I	RGATCY	2 cut(s)	10, 386
BstYI	RGATCY	2 cut(s)	10, 386
BstZI	CGGCCG	1 cut(s)	54
Bsu36I	CCTNAGG	2 cut(s)	235, 459
BsuRI	GGCC	9 cut(s)	5, 50, 56, 91, 240, 259, 308, 337, 435
BtgI	CCRYGG	1 cut(s)	51
BtsIMutI	CAGTG	3 cut(s)	224, 300, 589
Cac8I	GCNNGC	1 cut(s)	885
CaiI	CAGNNNCTG	3 cut(s)	197, 302, 482
CfoI	GCGC	2 cut(s)	818, 889
Cfr13I	GGNCC	5 cut(s)	90, 159, 258, 336, 433
Csp6I	GTAC	3 cut(s)	220, 325, 871
CviAII	CATG	4 cut(s)	505, 600, 788, 806
CviQI	GTAC	3 cut(s)	220, 325, 871
DdeI	CTNAG	5 cut(s)	235, 400, 459, 532, 759
DpnI	GATC	4 cut(s)	12, 388, 792, 927
DpnII	GATC	4 cut(s)	10, 386, 790, 925
DraI	TTTAAA	1 cut(s)	499
EaeI	YGGCCR	4 cut(s)	3, 48, 54, 306
EagI	CGGCCG	1 cut(s)	54
Eam1104I	CTCTTC	4 cut(s)	123, 420, 666, 705
EarI	CTCTTC	4 cut(s)	123, 420, 666, 705
EclXI	CGGCCG	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	903
Eco31I	GGTCTC	1 cut(s)	663
Eco47I	GGWCC	1 cut(s)	159
Eco52I	CGGCCG	1 cut(s)	54
Eco57I	CTGAAG	4 cut(s)	15, 459, 642, 918
Eco81I	CCTNAGG	2 cut(s)	235, 459
EcoO109I	RGGNCCY	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	903
ErhI	CCWWGG	1 cut(s)	903
FaeI	CATG	4 cut(s)	508, 603, 791, 809
FaiI	YATR	8 cut(s)	8, 506, 583, 601, 642, 686, 789, 807
FatI	CATG	4 cut(s)	504, 599, 787, 805
FauI	CCCGC	2 cut(s)	109, 277
FspBI	CTAG	2 cut(s)	879, 929
GlaI	GCGC	2 cut(s)	817, 888
GsaI	CCCAGC	1 cut(s)	18
HaeIII	GGCC	9 cut(s)	5, 50, 56, 91, 240, 259, 308, 337, 435
HapII	CCGG	3 cut(s)	57, 256, 282
HhaI	GCGC	2 cut(s)	818, 889
Hin1II	CATG	4 cut(s)	508, 603, 791, 809
Hin6I	GCGC	2 cut(s)	816, 887
HinP1I	GCGC	2 cut(s)	816, 887
HpaII	CCGG	3 cut(s)	57, 256, 282
HphI	GGTGA	6 cut(s)	171, 299, 574, 656, 666, 731
Hpy166II	GTNNAC	2 cut(s)	290, 589
Hpy188I	TCNGA	3 cut(s)	159, 345, 920
Hpy188III	TCNNGA	4 cut(s)	458, 482, 620, 936
Hpy8I	GTNNAC	2 cut(s)	290, 589
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	7 cut(s)	350, 363, 417, 446, 681, 703, 905
HpyCH4III	ACNGT	4 cut(s)	304, 593, 614, 915
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	3 cut(s)	376, 589, 866
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 47, 62, 194, 278
HpyF3I	CTNAG	5 cut(s)	235, 400, 459, 532, 759
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	4 cut(s)	508, 603, 791, 809
HspAI	GCGC	2 cut(s)	816, 887
Kzo9I	GATC	4 cut(s)	10, 386, 790, 925
LmnI	GCTCC	6 cut(s)	59, 73, 317, 460, 472, 572
Lsp1109I	GCAGC	8 cut(s)	49, 149, 184, 206, 265, 370, 373, 439
LweI	GCATC	2 cut(s)	197, 637
MaeI	CTAG	2 cut(s)	879, 929
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	3 cut(s)	43, 298, 562
MalI	GATC	4 cut(s)	12, 388, 792, 927
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	4 cut(s)	10, 386, 790, 925
MflI	RGATCY	2 cut(s)	10, 386
MhlI	GDGCHC	2 cut(s)	591, 835
MlsI	TGGCCA	2 cut(s)	5, 308
MluCI	AATT	4 cut(s)	153, 346, 627, 861
MluNI	TGGCCA	2 cut(s)	5, 308
MmeI	TCCRAC	1 cut(s)	414
Mox20I	TGGCCA	2 cut(s)	5, 308
MroXI	GAANNNNTTC	1 cut(s)	627
MscI	TGGCCA	2 cut(s)	5, 308
MseI	TTAA	3 cut(s)	498, 797, 839
Msp20I	TGGCCA	2 cut(s)	5, 308
MspA1I	CMGCKG	2 cut(s)	197, 278
MspI	CCGG	3 cut(s)	57, 256, 282
MspR9I	CCNGG	1 cut(s)	256
MvnI	CGCG	1 cut(s)	816
MwoI	GCNNNNNNNGC	5 cut(s)	35, 47, 62, 194, 278
NciI	CCSGG	1 cut(s)	256
NdeII	GATC	4 cut(s)	10, 386, 790, 925
NlaIII	CATG	4 cut(s)	508, 603, 791, 809
NlaIV	GGNNCC	3 cut(s)	161, 338, 434
NmeAIII	GCCGAG	2 cut(s)	266, 313
NmuCI	GTSAC	3 cut(s)	43, 298, 562
NspI	RCATGY	1 cut(s)	809
PciI	ACATGT	1 cut(s)	805
PcsI	WCGNNNNNNNCGW	1 cut(s)	856
PdmI	GAANNNNTTC	1 cut(s)	627
PflMI	CCANNNNNTGG	1 cut(s)	641
Ppu21I	YACGTR	1 cut(s)	586
PscI	ACATGT	1 cut(s)	805
PspFI	CCCAGC	1 cut(s)	14
PspN4I	GGNNCC	3 cut(s)	161, 338, 434
PspPI	GGNCC	5 cut(s)	90, 159, 258, 336, 433
PstNI	CAGNNNCTG	3 cut(s)	197, 302, 482
PsuI	RGATCY	2 cut(s)	10, 386
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	3 cut(s)	221, 326, 872
RsaNI	GTAC	3 cut(s)	220, 325, 871
SaqAI	TTAA	3 cut(s)	498, 797, 839
Sau3AI	GATC	4 cut(s)	10, 386, 790, 925
Sau96I	GGNCC	5 cut(s)	90, 159, 258, 336, 433
ScrFI	CCNGG	1 cut(s)	256
SduI	GDGCHC	2 cut(s)	591, 835
SfaNI	GCATC	2 cut(s)	197, 637
SfcI	CTRYAG	1 cut(s)	394
SinI	GGWCC	1 cut(s)	159
Sse9I	AATT	4 cut(s)	153, 346, 627, 861
SsiI	CCGC	8 cut(s)	27, 36, 39, 66, 102, 270, 273, 276
SspMI	CTAG	2 cut(s)	879, 929
StyD4I	CCNGG	1 cut(s)	254
StyI	CCWWGG	1 cut(s)	903
TaaI	ACNGT	4 cut(s)	304, 593, 614, 915
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	2 cut(s)	550, 829
TaqII	GACCGA	1 cut(s)	585
TasI	AATT	4 cut(s)	153, 346, 627, 861
TauI	GCSGC	5 cut(s)	38, 41, 68, 275, 278
Tru1I	TTAA	3 cut(s)	498, 797, 839
Tru9I	TTAA	3 cut(s)	498, 797, 839
TscAI	CASTG	3 cut(s)	231, 307, 596
TseFI	GTSAC	3 cut(s)	43, 298, 562
TseI	GCWGC	8 cut(s)	62, 137, 194, 197, 278, 358, 361, 452
Tsp45I	GTSAC	3 cut(s)	43, 298, 562
TspDTI	ATGAA	1 cut(s)	238
TspRI	CASTG	3 cut(s)	231, 307, 596
Van91I	CCANNNNNTGG	1 cut(s)	641
VneI	GTGCAC	1 cut(s)	587
VpaK11BI	GGWCC	1 cut(s)	159
XapI	RAATTY	3 cut(s)	153, 346, 627
XceI	RCATGY	1 cut(s)	809
XmnI	GAANNNNTTC	1 cut(s)	627
XspI	CTAG	2 cut(s)	879, 929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.