FvH4_7g00160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0007084
Physical Location & Seq
Reverse (-)
767255 .. 771852
4598 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g00160.t1

Sequence Viewer

Length: 843 bp
ATGAACAATTTATTTTTATTTTGTGTTGGGCAGGGCAGACTGAGAGAAAGGAAAGGAAAGCAAAATTCCCCGCCCAGAATGGCTATAGATCCCAACCACACCGCCAACGCCGCCGCCGCCGCCGGACGTCCGCTGAGACCCATAGCTCCTGCCCCTACTCCTCCTCCTCCTGCTCATATGTACACAGTCCCTATGCGGGCCCAGTCTTCACCTGGTGCCCTTGTCTACCCCTCTGCCCGCCCTCCCTACCCTCCTCCCCTCAATTTCCACCCTCATCCTCATCCTTATCCTCCTCATCTTCATCCCTCTCCTCCTCCGCCCGCTTACCAATCTCTTCTTCCCCCTCCAATTAAGGACCTTCGCTTTTCTGGCCTGGTTGCTCCTCCGTCTTCAGTTCCCGACTCCAACGGCATCAGGGATAAAGGCAGAGATGACACTCAATTCCTCATTCAAGATCGCAAAGTCAGGATAACAGATGGAGCTTCTCTATATGTGCTTTGTCGCTCATGGTTGAGGAATGGTACTTCTGAAGAAAGTCAGCCACGATACGGTGATGCTACAAGGTCTCTTCCAAAGCCTTCACCCATACCCATGGCAAGTGCGATTCCGCCAAACAAGGATGAAGGCGATAAAAAAGAAGACAACGAAGACAAGGTTGAGGAATCCGTTGAACATGTATCACCAGAAGATCTGTTAAAAAGACATATCAAACGTGCTAGAAAGGTTCGAGCACGATTAAGAGAAGAACGCTTGCGACGAATTGCTAGGTACAAGTCTAGGCTTGCTCTACTCCTTCCTCCACTTGTAGAACAGTTCCGAAATGATCTAGCAGCGGGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIN37

Protein Analysis

281

Amino Acids

31.21

Weight (kDa)

10.07

Isoelectric Point (pI)

64.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIN37 PF15306 156 - 264 3e-09 LIN37
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 130
AccB1I GGYRCC 1 cut(s) 215
AccI GTMKAC 1 cut(s) 225
AclWI GGATC 1 cut(s) 83
AcsI RAATTY 1 cut(s) 64
AcuI CTGAAG 2 cut(s) 375, 549
AcyI GRCGYC 1 cut(s) 127
AdeI CACNNNGTG 1 cut(s) 215
AfaI GTAC 3 cut(s) 182, 523, 770
AfiI CCNNNNNNNGG 2 cut(s) 196, 548
AflIII ACRYGT 1 cut(s) 673
AgsI TTSAA 2 cut(s) 452, 671
AjnI CCWGG 2 cut(s) 211, 372
AjuI GAANNNNNNNTTGG 2 cut(s) 321, 353
AluBI AGCT 2 cut(s) 146, 482
AluI AGCT 2 cut(s) 146, 482
Alw21I GWGCWC 1 cut(s) 733
Alw26I GTCTC 2 cut(s) 130, 570
AlwI GGATC 1 cut(s) 83
AoxI GGCC 2 cut(s) 198, 370
ApaI GGGCCC 1 cut(s) 202
ApeKI GCWGC 1 cut(s) 830
ApoI RAATTY 1 cut(s) 64
AspS9I GGNCC 3 cut(s) 198, 199, 355
AsuHPI GGTGA 4 cut(s) 201, 563, 573, 672
AvaII GGWCC 1 cut(s) 355
BaeGI GKGCMC 2 cut(s) 202, 220
BanI GGYRCC 1 cut(s) 215
BanII GRGCYC 1 cut(s) 202
BbsI GAAGAC 4 cut(s) 198, 381, 645, 654
Bbv12I GWGCWC 1 cut(s) 733
BccI CCATC 1 cut(s) 470
BceAI ACGGC 1 cut(s) 424
BciT130I CCWGG 2 cut(s) 213, 374
BcoDI GTCTC 2 cut(s) 130, 570
BfaI CTAG 4 cut(s) 717, 765, 777, 827
BfmI CTRYAG 1 cut(s) 84
BglII AGATCT 1 cut(s) 688
BisI GCNGC 5 cut(s) 111, 114, 117, 120, 831
BlsI GCNGC 5 cut(s) 112, 115, 118, 121, 832
Bme1390I CCNGG 2 cut(s) 213, 374
Bme18I GGWCC 1 cut(s) 355
BmgT120I GGNCC 3 cut(s) 198, 199, 355
BmiI GGNNCC 2 cut(s) 200, 217
BmrFI CCNGG 2 cut(s) 213, 374
BmrI ACTGGG 1 cut(s) 196
BmsI GCATC 2 cut(s) 420, 544
BmuI ACTGGG 1 cut(s) 196
BpiI GAAGAC 4 cut(s) 198, 381, 645, 654
BsaHI GRCGYC 1 cut(s) 127
BsaI GGTCTC 2 cut(s) 130, 570
BsaJI CCNNGG 1 cut(s) 591
BsaXI ACNNNNNCTCC 2 cut(s) 148, 178
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 548
Bse1I ACTGG 1 cut(s) 202
BseBI CCWGG 2 cut(s) 213, 374
BseDI CCNNGG 1 cut(s) 591
BseGI GGATG 4 cut(s) 274, 280, 301, 625
BseLI CCNNNNNNNGG 2 cut(s) 196, 548
BseMII CTCAG 2 cut(s) 32, 125
BseNI ACTGG 1 cut(s) 202
BseRI GAGGAG 8 cut(s) 150, 153, 156, 243, 282, 300, 303, 372
BseSI GKGCMC 2 cut(s) 202, 220
BshFI GGCC 2 cut(s) 200, 372
BshNI GGYRCC 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 733
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 2 cut(s) 196, 548
BsmAI GTCTC 2 cut(s) 130, 570
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 2 cut(s) 200, 372
Bso31I GGTCTC 2 cut(s) 130, 570
Bsp120I GGGCCC 1 cut(s) 198
Bsp1286I GDGCHC 3 cut(s) 202, 220, 733
Bsp1407I TGTACA 1 cut(s) 180
Bsp143I GATC 4 cut(s) 88, 454, 688, 823
Bsp19I CCATGG 1 cut(s) 591
BspANI GGCC 2 cut(s) 200, 372
BspCNI CTCAG 2 cut(s) 33, 126
BspLI GGNNCC 2 cut(s) 200, 217
BspPI GGATC 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 215
BspTNI GGTCTC 2 cut(s) 130, 570
BsrGI TGTACA 1 cut(s) 180
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 591
BssMI GATC 4 cut(s) 88, 454, 688, 823
BssNI GRCGYC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 591
Bst2UI CCWGG 2 cut(s) 213, 374
Bst4CI ACNGT 3 cut(s) 187, 551, 813
Bst6I CTCTTC 2 cut(s) 339, 573
BstACI GRCGYC 1 cut(s) 127
BstAUI TGTACA 1 cut(s) 180
BstC8I GCNNGC 5 cut(s) 198, 238, 321, 752, 783
BstDEI CTNAG 2 cut(s) 41, 134
BstDSI CCRYGG 1 cut(s) 591
BstF5I GGATG 4 cut(s) 274, 280, 301, 625
BstKTI GATC 4 cut(s) 91, 457, 691, 826
BstMAI GTCTC 2 cut(s) 130, 570
BstMBI GATC 4 cut(s) 88, 454, 688, 823
BstMWI GCNNNNNNNGC 4 cut(s) 110, 116, 119, 369
BstNI CCWGG 2 cut(s) 213, 374
BstNSI RCATGY 1 cut(s) 677
BstSCI CCNGG 2 cut(s) 211, 372
BstSFI CTRYAG 1 cut(s) 84
BstSLI GKGCMC 2 cut(s) 202, 220
BstV2I GAAGAC 4 cut(s) 198, 381, 645, 654
BstX2I RGATCY 2 cut(s) 88, 688
BstXI CCANNNNNNTGG 1 cut(s) 592
BstYI RGATCY 2 cut(s) 88, 688
BsuRI GGCC 2 cut(s) 200, 372
BtgI CCRYGG 1 cut(s) 591
BtsCI GGATG 4 cut(s) 274, 280, 301, 625
Cac8I GCNNGC 5 cut(s) 198, 238, 321, 752, 783
Cfr13I GGNCC 3 cut(s) 198, 199, 355
CsiI ACCWGGT 1 cut(s) 211
Csp6I GTAC 3 cut(s) 181, 522, 769
CviAII CATG 3 cut(s) 507, 592, 674
CviJI RGCY 8 cut(s) 83, 146, 200, 372, 482, 541, 577, 781
CviKI_1 RGCY 8 cut(s) 83, 146, 200, 372, 482, 541, 577, 781
CviQI GTAC 3 cut(s) 181, 522, 769
DdeI CTNAG 2 cut(s) 41, 134
DpnI GATC 4 cut(s) 90, 456, 690, 825
DpnII GATC 4 cut(s) 88, 454, 688, 823
DraIII CACNNNGTG 1 cut(s) 215
Eam1104I CTCTTC 2 cut(s) 339, 573
EarI CTCTTC 2 cut(s) 339, 573
EciI GGCGGA 2 cut(s) 306, 597
Eco130I CCWWGG 1 cut(s) 591
Eco24I GRGCYC 1 cut(s) 202
Eco31I GGTCTC 2 cut(s) 130, 570
Eco47I GGWCC 1 cut(s) 355
Eco57I CTGAAG 2 cut(s) 375, 549
EcoO109I RGGNCCY 1 cut(s) 355
EcoRII CCWGG 2 cut(s) 211, 372
EcoT14I CCWWGG 1 cut(s) 591
EcoT38I GRGCYC 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 591
FaeI CATG 3 cut(s) 510, 595, 677
FaqI GGGAC 1 cut(s) 173
FatI CATG 3 cut(s) 506, 591, 673
FauI CCCGC 5 cut(s) 78, 189, 245, 328, 826
FauNDI CATATG 1 cut(s) 177
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 5 cut(s) 111, 114, 117, 120, 831
FokI GGATG 4 cut(s) 261, 267, 288, 632
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 5 cut(s) 111, 114, 117, 120, 831
FspBI CTAG 4 cut(s) 717, 765, 777, 827
GluI GCNGC 5 cut(s) 111, 114, 117, 120, 831
HaeIII GGCC 2 cut(s) 200, 372
HapII CCGG 1 cut(s) 123
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 3 cut(s) 510, 595, 677
HinfI GANTC 3 cut(s) 401, 604, 662
HpaII CCGG 1 cut(s) 123
HphI GGTGA 4 cut(s) 201, 563, 573, 672
Hpy166II GTNNAC 2 cut(s) 183, 226
Hpy188I TCNGA 2 cut(s) 529, 818
Hpy188III TCNNGA 3 cut(s) 398, 452, 466
Hpy8I GTNNAC 2 cut(s) 183, 226
Hpy99I CGWCG 1 cut(s) 759
HpyAV CCTTC 4 cut(s) 368, 588, 617, 803
HpyCH4III ACNGT 3 cut(s) 187, 551, 813
HpyCH4IV ACGT 2 cut(s) 127, 712
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 116, 119, 369
HpyF3I CTNAG 2 cut(s) 41, 134
HpySE526I ACGT 2 cut(s) 127, 712
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 3 cut(s) 510, 595, 677
Kzo9I GATC 4 cut(s) 88, 454, 688, 823
LmnI GCTCC 3 cut(s) 151, 385, 479
LweI GCATC 2 cut(s) 420, 544
MabI ACCWGGT 1 cut(s) 211
MaeI CTAG 4 cut(s) 717, 765, 777, 827
MaeII ACGT 2 cut(s) 127, 712
MalI GATC 4 cut(s) 90, 456, 690, 825
MboI GATC 4 cut(s) 88, 454, 688, 823
MflI RGATCY 2 cut(s) 88, 688
MhlI GDGCHC 3 cut(s) 202, 220, 733
MluCI AATT 7 cut(s) 7, 64, 262, 348, 440, 759, 838
MlyI GAGTC 1 cut(s) 395
MmeI TCCRAC 1 cut(s) 429
MseI TTAA 3 cut(s) 351, 695, 737
MslI CAYNNNNRTG 1 cut(s) 590
MspA1I CMGCKG 2 cut(s) 133, 833
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 2 cut(s) 213, 374
MvaI CCWGG 2 cut(s) 213, 374
MwoI GCNNNNNNNGC 4 cut(s) 110, 116, 119, 369
NcoI CCATGG 1 cut(s) 591
NdeI CATATG 1 cut(s) 177
NdeII GATC 4 cut(s) 88, 454, 688, 823
NlaIII CATG 3 cut(s) 510, 595, 677
NlaIV GGNNCC 2 cut(s) 200, 217
NspI RCATGY 1 cut(s) 677
PciI ACATGT 1 cut(s) 673
PcsI WCGNNNNNNNCGW 1 cut(s) 754
PfeI GAWTC 2 cut(s) 604, 662
PkrI GCNGC 5 cut(s) 112, 115, 118, 121, 832
PleI GAGTC 1 cut(s) 395
PpsI GAGTC 1 cut(s) 395
PpuMI RGGWCCY 1 cut(s) 355
PscI ACATGT 1 cut(s) 673
Psp5II RGGWCCY 1 cut(s) 355
Psp6I CCWGG 2 cut(s) 211, 372
PspGI CCWGG 2 cut(s) 211, 372
PspN4I GGNNCC 2 cut(s) 200, 217
PspOMI GGGCCC 1 cut(s) 198
PspPI GGNCC 3 cut(s) 198, 199, 355
PspPPI RGGWCCY 1 cut(s) 355
PsuI RGATCY 2 cut(s) 88, 688
RsaI GTAC 3 cut(s) 182, 523, 770
RsaNI GTAC 3 cut(s) 181, 522, 769
RseI CAYNNNNRTG 1 cut(s) 590
SaqAI TTAA 3 cut(s) 351, 695, 737
SatI GCNGC 5 cut(s) 111, 114, 117, 120, 831
Sau3AI GATC 4 cut(s) 88, 454, 688, 823
Sau96I GGNCC 3 cut(s) 198, 199, 355
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 2 cut(s) 213, 374
SduI GDGCHC 3 cut(s) 202, 220, 733
SexAI ACCWGGT 1 cut(s) 211
SfaNI GCATC 2 cut(s) 420, 544
SfcI CTRYAG 1 cut(s) 84
SinI GGWCC 1 cut(s) 355
SmiMI CAYNNNNRTG 1 cut(s) 590
Sse9I AATT 7 cut(s) 7, 64, 262, 348, 440, 759, 838
SspMI CTAG 4 cut(s) 717, 765, 777, 827
StyD4I CCNGG 2 cut(s) 211, 372
StyI CCWWGG 1 cut(s) 591
TaaI ACNGT 3 cut(s) 187, 551, 813
TaiI ACGT 2 cut(s) 130, 715
TaqI TCGA 1 cut(s) 727
TasI AATT 7 cut(s) 7, 64, 262, 348, 440, 759, 838
TatI WGTACW 1 cut(s) 180
TauI GCSGC 4 cut(s) 113, 116, 119, 122
TfiI GAWTC 2 cut(s) 604, 662
Tru1I TTAA 3 cut(s) 351, 695, 737
Tru9I TTAA 3 cut(s) 351, 695, 737
TseI GCWGC 1 cut(s) 830
TspDTI ATGAA 3 cut(s) 17, 290, 636
TspGWI ACGGA 2 cut(s) 375, 655
VpaK11BI GGWCC 1 cut(s) 355
XapI RAATTY 1 cut(s) 64
XceI RCATGY 1 cut(s) 677
XcmI CCANNNNNNNNNTGG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 4 cut(s) 717, 765, 777, 827
ZraI GACGTC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.