RLG00000030799

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007084
Physical Location & Seq
Forward (+)
67704961 .. 67711301
6341 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030799

Sequence Viewer

Length: 894 bp
ATGGTGGGGCACTGGGCAGGGCAGAAGGAGGGTAAAGGCAAAGCAAATTTCATTCCCCAAAATTCCCCGCCAGTGAGCGAGCGAGCGACCAGCATGGCTATAGATCCCAACCACGCCACCGCCACCGCCACCACCACCGGCGCCGCCGCCACACGGCCGCTGAGACCCATAGCTCCCGCACCTCCTCCTGCCCCTCCTGCTCATATGTACACGGTCCCTATTCGGGCCCAATCTTCACCTGGTGCACTTGTCTACCCATCTGCCCGCGCTCCCTACCCACCTCCCCTCAATTTTCATTCCCAGCCTCATCCTCATCCTCATCCTCATCCTTATTCTCCTCATCTTCATCCTCCTCCTCCTCCTCTTCCCTCGTACCAATCTCCTCTTCCCCCTCCAATTAAGCCCGACCTTCGATTTCCTGGCCTCGTTGCTCCTCCGTCTTCAGTTCCCGACTCCAATGGCATCAGGGATAAAAGCAGAGATGACACTCTTTCTGTCATTCAAGATCGGAAAGTCAGGATAACAGATGGAGCTTCTCTATATGCGCTTTGTCGGTCATGGCTGAGGAACGGTTCTCCCGAAGAAAGTCAGACACGATATGGTGATGCTACAAGGTCTCTTCCAAAGCCTTCACCCATACCTATGGCAAGTGCGACTCCGCCAAAGAAGGAAGAAGGCGATAAAAAAGAAGACATTGAAGACAAGGATGAGGAATCCCTTGAACATGTATCACCAGAAGATCTGTTAAAAAGACATGTCAAACGTGCTAGAAAGGTTCGAGCACGATTAAGAGAAGAACGTTTGCGGCGCATTGCAAGGTACAAGTCTAGGCTTGCTCTTCTCCTTCCTCCGCTGGTAGAACAGTTCCGAAATGATCTAGCTGCTGGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIN37

Protein Analysis

298

Amino Acids

32.64

Weight (kDa)

9.85

Isoelectric Point (pI)

68.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIN37 PF15306 173 - 281 1.1e-07 LIN37
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 252
AccII CGCG 1 cut(s) 267
AclI AACGTT 1 cut(s) 799
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 1 cut(s) 155
AcsI RAATTY 2 cut(s) 46, 61
AcuI CTGAAG 1 cut(s) 426
AcyI GRCGYC 1 cut(s) 141
AdeI CACNNNGTG 1 cut(s) 242
AfaI GTAC 3 cut(s) 209, 374, 821
AfiI CCNNNNNNNGG 2 cut(s) 153, 223
AflIII ACRYGT 2 cut(s) 724, 754
AgsI TTSAA 3 cut(s) 503, 698, 722
AjnI CCWGG 2 cut(s) 238, 418
AjuI GAANNNNNNNTTGG 2 cut(s) 369, 401
AluBI AGCT 3 cut(s) 173, 533, 881
AluI AGCT 3 cut(s) 173, 533, 881
Alw21I GWGCWC 2 cut(s) 247, 784
Alw26I GTCTC 2 cut(s) 157, 621
Alw44I GTGCAC 1 cut(s) 243
AlwI GGATC 1 cut(s) 98
AoxI GGCC 3 cut(s) 155, 225, 421
ApaI GGGCCC 1 cut(s) 229
ApaLI GTGCAC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 881
ApoI RAATTY 2 cut(s) 46, 61
AspLEI GCGC 4 cut(s) 143, 269, 547, 810
AspS9I GGNCC 3 cut(s) 214, 225, 226
AsuHPI GGTGA 4 cut(s) 228, 614, 624, 723
AvaII GGWCC 1 cut(s) 214
BaeGI GKGCMC 3 cut(s) 12, 229, 247
BanI GGYRCC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 229
BbsI GAAGAC 3 cut(s) 432, 696, 705
Bbv12I GWGCWC 2 cut(s) 247, 784
BbvCI CCTCAGC 1 cut(s) 563
BbvI GCAGC 1 cut(s) 868
BccI CCATC 2 cut(s) 265, 521
BceAI ACGGC 1 cut(s) 170
BciT130I CCWGG 2 cut(s) 240, 420
BcoDI GTCTC 2 cut(s) 157, 621
BfaI CTAG 3 cut(s) 768, 828, 878
BfmI CTRYAG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 144
BglII AGATCT 1 cut(s) 739
BisI GCNGC 5 cut(s) 144, 147, 158, 806, 882
BlsI GCNGC 5 cut(s) 145, 148, 159, 807, 883
Bme1390I CCNGG 2 cut(s) 240, 420
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 3 cut(s) 214, 225, 226
BmiI GGNNCC 3 cut(s) 142, 216, 227
BmrFI CCNGG 2 cut(s) 240, 420
BmrI ACTGGG 1 cut(s) 22
BmsI GCATC 2 cut(s) 471, 595
BmuI ACTGGG 1 cut(s) 22
BpiI GAAGAC 3 cut(s) 432, 696, 705
Bpu10I CCTNAGC 1 cut(s) 563
BsaHI GRCGYC 1 cut(s) 141
BsaI GGTCTC 2 cut(s) 157, 621
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 223
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 2 cut(s) 17, 71
Bse3DI GCAATG 1 cut(s) 810
BseBI CCWGG 2 cut(s) 240, 420
BseGI GGATG 6 cut(s) 307, 313, 319, 325, 346, 712
BseLI CCNNNNNNNGG 2 cut(s) 153, 223
BseMI GCAATG 1 cut(s) 810
BseMII CTCAG 2 cut(s) 152, 554
BseNI ACTGG 2 cut(s) 17, 71
BseRI GAGGAG 8 cut(s) 174, 327, 342, 345, 348, 351, 372, 423
BseSI GKGCMC 3 cut(s) 12, 229, 247
BseX3I CGGCCG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 868
BseYI CCCAGC 1 cut(s) 300
Bsh1236I CGCG 1 cut(s) 267
Bsh1285I CGRYCG 1 cut(s) 158
BshFI GGCC 3 cut(s) 157, 227, 423
BshNI GGYRCC 1 cut(s) 140
BsiEI CGRYCG 1 cut(s) 158
BsiHKAI GWGCWC 2 cut(s) 247, 784
BsiSI CCGG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 2 cut(s) 153, 223
BsmAI GTCTC 2 cut(s) 157, 621
BsmFI GGGAC 1 cut(s) 200
BsnI GGCC 3 cut(s) 157, 227, 423
Bso31I GGTCTC 2 cut(s) 157, 621
Bsp120I GGGCCC 1 cut(s) 225
Bsp1286I GDGCHC 4 cut(s) 12, 229, 247, 784
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 4 cut(s) 103, 505, 739, 874
BspANI GGCC 3 cut(s) 157, 227, 423
BspCNI CTCAG 2 cut(s) 153, 555
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 3 cut(s) 142, 216, 227
BspPI GGATC 1 cut(s) 98
BspQI GCTCTTC 1 cut(s) 843
BspT107I GGYRCC 1 cut(s) 140
BspTNI GGTCTC 2 cut(s) 157, 621
BsrDI GCAATG 1 cut(s) 810
BsrFI RCCGGY 1 cut(s) 137
BsrGI TGTACA 1 cut(s) 207
BsrI ACTGG 2 cut(s) 17, 71
BssAI RCCGGY 1 cut(s) 137
BssMI GATC 4 cut(s) 103, 505, 739, 874
BssNI GRCGYC 1 cut(s) 141
Bst2UI CCWGG 2 cut(s) 240, 420
Bst4CI ACNGT 3 cut(s) 214, 572, 864
Bst6I CTCTTC 4 cut(s) 369, 390, 624, 843
BstACI GRCGYC 1 cut(s) 141
BstAUI TGTACA 1 cut(s) 207
BstC8I GCNNGC 4 cut(s) 80, 84, 265, 834
BstDEI CTNAG 2 cut(s) 161, 563
BstF5I GGATG 6 cut(s) 307, 313, 319, 325, 346, 712
BstFNI CGCG 1 cut(s) 267
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 4 cut(s) 143, 269, 547, 810
BstKTI GATC 4 cut(s) 106, 508, 742, 877
BstMAI GTCTC 2 cut(s) 157, 621
BstMBI GATC 4 cut(s) 103, 505, 739, 874
BstMCI CGRYCG 1 cut(s) 158
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 2 cut(s) 240, 420
BstNSI RCATGY 2 cut(s) 728, 758
BstSCI CCNGG 2 cut(s) 238, 418
BstSFI CTRYAG 1 cut(s) 99
BstSLI GKGCMC 3 cut(s) 12, 229, 247
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 868
BstV2I GAAGAC 3 cut(s) 432, 696, 705
BstX2I RGATCY 2 cut(s) 103, 739
BstXI CCANNNNNNTGG 1 cut(s) 643
BstYI RGATCY 2 cut(s) 103, 739
BstZI CGGCCG 1 cut(s) 155
BsuRI GGCC 3 cut(s) 157, 227, 423
BtsCI GGATG 6 cut(s) 307, 313, 319, 325, 346, 712
BtsIMutI CAGTG 2 cut(s) 10, 78
Cac8I GCNNGC 4 cut(s) 80, 84, 265, 834
CfoI GCGC 4 cut(s) 143, 269, 547, 810
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 3 cut(s) 214, 225, 226
CsiI ACCWGGT 1 cut(s) 238
Csp6I GTAC 3 cut(s) 208, 373, 820
CviAII CATG 4 cut(s) 94, 558, 725, 755
CviQI GTAC 3 cut(s) 208, 373, 820
DdeI CTNAG 2 cut(s) 161, 563
DinI GGCGCC 1 cut(s) 142
DpnI GATC 4 cut(s) 105, 507, 741, 876
DpnII GATC 4 cut(s) 103, 505, 739, 874
DraIII CACNNNGTG 1 cut(s) 242
EaeI YGGCCR 1 cut(s) 155
EagI CGGCCG 1 cut(s) 155
Eam1104I CTCTTC 4 cut(s) 369, 390, 624, 843
EarI CTCTTC 4 cut(s) 369, 390, 624, 843
EciI GGCGGA 1 cut(s) 648
EclXI CGGCCG 1 cut(s) 155
Eco24I GRGCYC 1 cut(s) 229
Eco31I GGTCTC 2 cut(s) 157, 621
Eco47I GGWCC 1 cut(s) 214
Eco52I CGGCCG 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 426
EcoRII CCWGG 2 cut(s) 238, 418
EcoT38I GRGCYC 1 cut(s) 229
EgeI GGCGCC 1 cut(s) 142
EheI GGCGCC 1 cut(s) 142
FaeI CATG 4 cut(s) 97, 561, 728, 758
FaqI GGGAC 1 cut(s) 200
FatI CATG 4 cut(s) 93, 557, 724, 754
FauI CCCGC 3 cut(s) 75, 184, 272
FauNDI CATATG 1 cut(s) 204
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 5 cut(s) 144, 147, 158, 806, 882
FokI GGATG 6 cut(s) 294, 300, 306, 312, 333, 719
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 5 cut(s) 144, 147, 158, 806, 882
FspBI CTAG 3 cut(s) 768, 828, 878
GlaI GCGC 4 cut(s) 142, 268, 546, 809
GluI GCNGC 5 cut(s) 144, 147, 158, 806, 882
GsaI CCCAGC 1 cut(s) 304
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 3 cut(s) 157, 227, 423
HapII CCGG 1 cut(s) 138
HhaI GCGC 4 cut(s) 143, 269, 547, 810
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 4 cut(s) 97, 561, 728, 758
Hin6I GCGC 4 cut(s) 141, 267, 545, 808
HinP1I GCGC 4 cut(s) 141, 267, 545, 808
HinfI GANTC 3 cut(s) 452, 655, 713
HpaII CCGG 1 cut(s) 138
HphI GGTGA 4 cut(s) 228, 614, 624, 723
Hpy166II GTNNAC 3 cut(s) 210, 245, 253
Hpy188I TCNGA 3 cut(s) 510, 591, 869
Hpy188III TCNNGA 4 cut(s) 449, 503, 517, 578
Hpy8I GTNNAC 3 cut(s) 210, 245, 253
HpyAV CCTTC 6 cut(s) 19, 419, 639, 661, 668, 854
HpyCH4III ACNGT 3 cut(s) 214, 572, 864
HpyCH4IV ACGT 2 cut(s) 763, 799
HpyCH4V TGCA 2 cut(s) 245, 815
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 2 cut(s) 161, 563
HpySE526I ACGT 2 cut(s) 763, 799
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 4 cut(s) 97, 561, 728, 758
HspAI GCGC 4 cut(s) 141, 267, 545, 808
KasI GGCGCC 1 cut(s) 140
Kzo9I GATC 4 cut(s) 103, 505, 739, 874
LguI GCTCTTC 1 cut(s) 843
LmnI GCTCC 4 cut(s) 178, 274, 436, 530
Lsp1109I GCAGC 1 cut(s) 868
LweI GCATC 2 cut(s) 471, 595
MabI ACCWGGT 1 cut(s) 238
MaeI CTAG 3 cut(s) 768, 828, 878
MaeII ACGT 2 cut(s) 763, 799
MalI GATC 4 cut(s) 105, 507, 741, 876
MboI GATC 4 cut(s) 103, 505, 739, 874
MflI RGATCY 2 cut(s) 103, 739
MhlI GDGCHC 4 cut(s) 12, 229, 247, 784
MluCI AATT 5 cut(s) 46, 61, 289, 396, 889
Mly113I GGCGCC 1 cut(s) 141
MlyI GAGTC 2 cut(s) 446, 649
MseI TTAA 3 cut(s) 399, 746, 788
MslI CAYNNNNRTG 1 cut(s) 641
MspA1I CMGCKG 2 cut(s) 160, 853
MspI CCGG 1 cut(s) 138
MspR9I CCNGG 2 cut(s) 240, 420
MvaI CCWGG 2 cut(s) 240, 420
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 197
NarI GGCGCC 1 cut(s) 141
NdeI CATATG 1 cut(s) 204
NdeII GATC 4 cut(s) 103, 505, 739, 874
NlaIII CATG 4 cut(s) 97, 561, 728, 758
NlaIV GGNNCC 3 cut(s) 142, 216, 227
NspI RCATGY 2 cut(s) 728, 758
PciI ACATGT 2 cut(s) 724, 754
PciSI GCTCTTC 1 cut(s) 843
PcsI WCGNNNNNNNCGW 1 cut(s) 576
PfeI GAWTC 1 cut(s) 713
PkrI GCNGC 5 cut(s) 145, 148, 159, 807, 883
PleI GAGTC 2 cut(s) 446, 649
PluTI GGCGCC 1 cut(s) 144
PpsI GAGTC 2 cut(s) 446, 649
PscI ACATGT 2 cut(s) 724, 754
Psp1406I AACGTT 1 cut(s) 799
Psp6I CCWGG 2 cut(s) 238, 418
PspFI CCCAGC 1 cut(s) 300
PspGI CCWGG 2 cut(s) 238, 418
PspN4I GGNNCC 3 cut(s) 142, 216, 227
PspOMI GGGCCC 1 cut(s) 225
PspPI GGNCC 3 cut(s) 214, 225, 226
PsuI RGATCY 2 cut(s) 103, 739
RsaI GTAC 3 cut(s) 209, 374, 821
RsaNI GTAC 3 cut(s) 208, 373, 820
RseI CAYNNNNRTG 1 cut(s) 641
SapI GCTCTTC 1 cut(s) 843
SaqAI TTAA 3 cut(s) 399, 746, 788
SatI GCNGC 5 cut(s) 144, 147, 158, 806, 882
Sau3AI GATC 4 cut(s) 103, 505, 739, 874
Sau96I GGNCC 3 cut(s) 214, 225, 226
SchI GAGTC 2 cut(s) 446, 649
ScrFI CCNGG 2 cut(s) 240, 420
SduI GDGCHC 4 cut(s) 12, 229, 247, 784
SexAI ACCWGGT 1 cut(s) 238
SfaNI GCATC 2 cut(s) 471, 595
SfcI CTRYAG 1 cut(s) 99
SfoI GGCGCC 1 cut(s) 142
SgrAI CRCCGGYG 1 cut(s) 137
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 641
Sse9I AATT 5 cut(s) 46, 61, 289, 396, 889
SspDI GGCGCC 1 cut(s) 140
SspMI CTAG 3 cut(s) 768, 828, 878
StyD4I CCNGG 2 cut(s) 238, 418
TaaI ACNGT 3 cut(s) 214, 572, 864
TaiI ACGT 2 cut(s) 766, 802
TaqI TCGA 2 cut(s) 412, 778
TaqII GACCGA 1 cut(s) 543
TasI AATT 5 cut(s) 46, 61, 289, 396, 889
TatI WGTACW 1 cut(s) 207
TauI GCSGC 4 cut(s) 146, 149, 160, 808
TfiI GAWTC 1 cut(s) 713
Tru1I TTAA 3 cut(s) 399, 746, 788
Tru9I TTAA 3 cut(s) 399, 746, 788
TscAI CASTG 2 cut(s) 17, 78
TseI GCWGC 1 cut(s) 881
TspDTI ATGAA 3 cut(s) 40, 284, 335
TspGWI ACGGA 1 cut(s) 426
TspRI CASTG 2 cut(s) 17, 78
VneI GTGCAC 1 cut(s) 243
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 2 cut(s) 46, 61
XceI RCATGY 2 cut(s) 728, 758
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 252
XspI CTAG 3 cut(s) 768, 828, 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.