Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007084

Physical Location & Seq

Genomic Coordinates Reverse (-)

418507 .. 426576

Gene Structure 8070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G004100.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCCATAGATCCCAACCACACCACCACTACAGCCACTGCCGCCATGGCCACCGCCACAGCCACCTCCACTGTCCCCACAACCACCACGAGACCCATAAGACCCATATCATCTTCTCCTGTTCCGAATCTGTACCCAAGCCAAGCCCTCCCAATTCGAACCCAATCACCATCAGCATCTCCAGTAGCAGCAGCAGCACATCACAATCAGGGGGTTCTTTACCCAGTGGCTTCTTCAGGCCGAGGCTTCATTCCCAGGCCCAGTTGGTCCGCCACTGCCGGAGGCGAACACACAGTCACTGTGGCCAACGCCGGAGGAGGAGGAGGAGGAGCTGGAGCTGCCTACCCATCTCGGCCCTTACTCAATTTCCCTCCTCAGCAGCCTATTTCTCTGCATTTGATAAGACCCACCTACAACTTGGCACCATCTCCTCTTCCTCCTCCGATTAAGGGCCTTCCTCTTTCTTCAACTCCCGAGGTTGCTCCATCTTCAGTGCCTGACAGCAATGGTTTTAAAGACAACAGGGATAAAAGCAGAGATGATAACTTAGCTGTCATCAGAGGTCGAAAAGTCAGAATGACGGATGGAGCTTCTCTATATGTTCATTGTCGGTCATGGTTGAGGAATGGAGTTCCTGAAGAATGTCAGCCACCATATGGCGATACTGTAAGGTCTCTTCCAAAACCATCACCTATACCTATGGCAAGTGCTACTTTGCCAAAGAAGGAGGAAGGTGAACAAGAAAAAGAAGGAAAAAAAAATGATAATGAGGATGAGGATGAGGAGTACATTCAACGTTCATCACCACATGATCTGTTAAAAAGACATGTCAAACGCGCCAGAAAAGTTCGAGCACGGTTAAGAGAAGAACGCTTAGGGCGAATTGCAAGGTACAAGTCTAGGCTTGCTCTTCTCCTTCCTCCTTTGGTAGAACAGTTCAGAAATGATCTAGCTGCTGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIN37

Protein Analysis

322

Amino Acids

34.56

Weight (kDa)

9.85

Isoelectric Point (pI)

62.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04930 AT1G04930 AT1G04930 AT2G32840 AT2G32840
fragaria_vesca	FvH4_7g00160 FvH4_7g00160 FvH4_7g00160
malus_domestica	MD02G1318600.v1.1 MD07G1002600.v1.1
prunus_persica	Prupe.2G004100_v2.0.a1 Prupe.2G004100_v2.0.a1 Prupe.2G004100_v2.0.a1 Prupe.2G004100_v2.0.a1
pyrus_communis	pycom02g26690 pycom07g00260
rosa_chinensis	RchiOBHm_Chr1g0313411
rosa_laevigata	RLG00000030799
rosa_multiflora	Rmu_sc0000035.1_g000031 Rmu_sc0000035.1_g000045
rosa_roxburghii	Rroxscaffold_4G00332210
rosa_rugosa	RorugPtG0004800
rosa_samantha	Rh1AG003400 Rh1CG001300
rosa_wichuraiana	Rw1G000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	421
AccB7I	CCANNNNNTGG	1 cut(s)	656
AccII	CGCG	1 cut(s)	837
AciI	CCGC	3 cut(s)	42, 54, 270
AclI	AACGTT	1 cut(s)	796
AclWI	GGATC	1 cut(s)	5
AcoI	YGGCCR	3 cut(s)	3, 48, 303
AcuI	CTGAAG	3 cut(s)	219, 474, 657
AfaI	GTAC	3 cut(s)	134, 788, 893
AfiI	CCNNNNNNNGG	2 cut(s)	449, 656
AflIII	ACRYGT	1 cut(s)	826
AgsI	TTSAA	2 cut(s)	468, 794
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	5 cut(s)	332, 338, 551, 590, 953
AluI	AGCT	5 cut(s)	332, 338, 551, 590, 953
Alw21I	GWGCWC	1 cut(s)	856
Alw26I	GTCTC	2 cut(s)	85, 678
AlwI	GGATC	1 cut(s)	5
AlwNI	CAGNNNCTG	3 cut(s)	38, 299, 497
Ama87I	CYCGRG	1 cut(s)	473
AoxI	GGCC	7 cut(s)	3, 48, 238, 257, 303, 353, 451
ApeKI	GCWGC	6 cut(s)	188, 191, 194, 338, 379, 953
ArsI	GACNNNNNNTTYG	2 cut(s)	279, 311
AspLEI	GCGC	1 cut(s)	839
AspS9I	GGNCC	4 cut(s)	258, 267, 354, 451
AsuHPI	GGTGA	4 cut(s)	159, 681, 746, 795
AsuII	TTCGAA	1 cut(s)	157
AvaI	CYCGRG	1 cut(s)	473
AvaII	GGWCC	1 cut(s)	267
BalI	TGGCCA	3 cut(s)	5, 50, 305
BanI	GGYRCC	1 cut(s)	421
BarI	GAAGNNNNNNTAC	2 cut(s)	660, 692
BauI	CACGAG	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	856
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	6 cut(s)	200, 203, 206, 325, 391, 940
BccI	CCATC	6 cut(s)	178, 355, 433, 493, 578, 694
BciT130I	CCWGG	1 cut(s)	256
BcoDI	GTCTC	2 cut(s)	85, 678
BfaI	CTAG	2 cut(s)	900, 950
BfmI	CTRYAG	1 cut(s)	30
BglI	GCCNNNNNGGC	1 cut(s)	47
BisI	GCNGC	7 cut(s)	42, 189, 192, 195, 339, 380, 954
BlsI	GCNGC	7 cut(s)	43, 190, 193, 196, 340, 381, 955
Bme1390I	CCNGG	1 cut(s)	256
Bme18I	GGWCC	1 cut(s)	267
BmeT110I	CYCGRG	1 cut(s)	473
BmgT120I	GGNCC	4 cut(s)	258, 267, 354, 451
BmiI	GGNNCC	1 cut(s)	423
BmrFI	CCNGG	1 cut(s)	256
BmrI	ACTGGG	2 cut(s)	218, 255
BmsI	GCATC	1 cut(s)	185
BmuI	ACTGGG	2 cut(s)	218, 255
BpmI	CTGGAG	2 cut(s)	165, 354
Bpu10I	CCTNAGC	2 cut(s)	375, 874
Bpu14I	TTCGAA	1 cut(s)	157
BsaI	GGTCTC	2 cut(s)	85, 678
BsaJI	CCNNGG	4 cut(s)	45, 241, 254, 474
Bsc4I	CCNNNNNNNGG	2 cut(s)	449, 656
Bse1I	ACTGG	3 cut(s)	182, 224, 261
Bse3DI	GCAATG	1 cut(s)	511
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	4 cut(s)	45, 241, 254, 474
BseGI	GGATG	3 cut(s)	589, 778, 784
BseLI	CCNNNNNNNGG	2 cut(s)	449, 656
BseMI	GCAATG	1 cut(s)	511
BseMII	CTCAG	1 cut(s)	389
BseNI	ACTGG	3 cut(s)	182, 224, 261
BseRI	GAGGAG	9 cut(s)	330, 333, 336, 339, 342, 363, 420, 429, 797
BseXI	GCAGC	6 cut(s)	200, 203, 206, 325, 391, 940
Bsh1236I	CGCG	1 cut(s)	837
BshFI	GGCC	7 cut(s)	5, 50, 240, 259, 305, 355, 453
BshNI	GGYRCC	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	856
BsiHKCI	CYCGRG	1 cut(s)	473
BsiSI	CCGG	2 cut(s)	279, 312
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	449, 656
BsmAI	GTCTC	2 cut(s)	85, 678
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	7 cut(s)	5, 50, 240, 259, 305, 355, 453
Bso31I	GGTCTC	2 cut(s)	85, 678
BsoBI	CYCGRG	1 cut(s)	473
Bsp119I	TTCGAA	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	856
Bsp143I	GATC	3 cut(s)	10, 811, 946
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	3 cut(s)	42, 54, 270
BspANI	GGCC	7 cut(s)	5, 50, 240, 259, 305, 355, 453
BspCNI	CTCAG	1 cut(s)	388
BspFNI	CGCG	1 cut(s)	837
BspLI	GGNNCC	1 cut(s)	423
BspPI	GGATC	1 cut(s)	5
BspQI	GCTCTTC	1 cut(s)	915
BspT104I	TTCGAA	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	421
BspTNI	GGTCTC	2 cut(s)	85, 678
BsrDI	GCAATG	1 cut(s)	511
BsrI	ACTGG	3 cut(s)	182, 224, 261
BssECI	CCNNGG	4 cut(s)	45, 241, 254, 474
BssMI	GATC	3 cut(s)	10, 811, 946
BssSI	CACGAG	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	6 cut(s)	73, 295, 301, 667, 858, 936
Bst6I	CTCTTC	3 cut(s)	438, 681, 915
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	906
BstDEI	CTNAG	3 cut(s)	375, 547, 874
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	3 cut(s)	589, 778, 784
BstFNI	CGCG	1 cut(s)	837
BstHHI	GCGC	1 cut(s)	839
BstKTI	GATC	3 cut(s)	13, 814, 949
BstMAI	GTCTC	2 cut(s)	85, 678
BstMBI	GATC	3 cut(s)	10, 811, 946
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 47, 194, 338
BstNI	CCWGG	1 cut(s)	256
BstNSI	RCATGY	1 cut(s)	830
BstSCI	CCNGG	1 cut(s)	254
BstSFI	CTRYAG	1 cut(s)	30
BstUI	CGCG	1 cut(s)	837
BstV1I	GCAGC	6 cut(s)	200, 203, 206, 325, 391, 940
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuRI	GGCC	7 cut(s)	5, 50, 240, 259, 305, 355, 453
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	3 cut(s)	589, 778, 784
BtsI	GCAGTG	2 cut(s)	36, 273
BtsIMutI	CAGTG	6 cut(s)	36, 69, 231, 273, 297, 498
Cac8I	GCNNGC	1 cut(s)	906
CaiI	CAGNNNCTG	3 cut(s)	38, 299, 497
CfoI	GCGC	1 cut(s)	839
Cfr13I	GGNCC	4 cut(s)	258, 267, 354, 451
Csp6I	GTAC	3 cut(s)	133, 787, 892
CviAII	CATG	4 cut(s)	46, 615, 809, 827
CviQI	GTAC	3 cut(s)	133, 787, 892
DdeI	CTNAG	3 cut(s)	375, 547, 874
DpnI	GATC	3 cut(s)	12, 813, 948
DpnII	GATC	3 cut(s)	10, 811, 946
DraI	TTTAAA	1 cut(s)	514
EaeI	YGGCCR	3 cut(s)	3, 48, 303
Eam1104I	CTCTTC	3 cut(s)	438, 681, 915
EarI	CTCTTC	3 cut(s)	438, 681, 915
EciI	GGCGGA	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	45
Eco31I	GGTCTC	2 cut(s)	85, 678
Eco47I	GGWCC	1 cut(s)	267
Eco57I	CTGAAG	3 cut(s)	219, 474, 657
Eco88I	CYCGRG	1 cut(s)	473
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRII	CCWGG	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	4 cut(s)	49, 618, 812, 830
FalI	AAGNNNNNCTT	2 cut(s)	697, 729
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	4 cut(s)	45, 614, 808, 826
FauNDI	CATATG	1 cut(s)	655
Fnu4HI	GCNGC	7 cut(s)	42, 189, 192, 195, 339, 380, 954
FokI	GGATG	3 cut(s)	596, 785, 791
Fsp4HI	GCNGC	7 cut(s)	42, 189, 192, 195, 339, 380, 954
FspBI	CTAG	2 cut(s)	900, 950
GlaI	GCGC	1 cut(s)	838
GluI	GCNGC	7 cut(s)	42, 189, 192, 195, 339, 380, 954
GsuI	CTGGAG	2 cut(s)	165, 354
HaeIII	GGCC	7 cut(s)	5, 50, 240, 259, 305, 355, 453
HapII	CCGG	2 cut(s)	279, 312
HhaI	GCGC	1 cut(s)	839
Hin1II	CATG	4 cut(s)	49, 618, 812, 830
Hin6I	GCGC	1 cut(s)	837
HinP1I	GCGC	1 cut(s)	837
HinfI	GANTC	1 cut(s)	127
HpaII	CCGG	2 cut(s)	279, 312
HphI	GGTGA	4 cut(s)	159, 681, 746, 795
Hpy166II	GTNNAC	1 cut(s)	737
Hpy188I	TCNGA	5 cut(s)	126, 444, 560, 575, 941
Hpy188III	TCNNGA	2 cut(s)	473, 635
Hpy8I	GTNNAC	1 cut(s)	737
HpyAV	CCTTC	5 cut(s)	464, 718, 725, 743, 926
HpyCH4III	ACNGT	6 cut(s)	73, 295, 301, 667, 858, 936
HpyCH4IV	ACGT	1 cut(s)	796
HpyCH4V	TGCA	2 cut(s)	394, 887
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 47, 194, 338
HpyF3I	CTNAG	3 cut(s)	375, 547, 874
HpySE526I	ACGT	1 cut(s)	796
Hsp92II	CATG	4 cut(s)	49, 618, 812, 830
HspAI	GCGC	1 cut(s)	837
Kzo9I	GATC	3 cut(s)	10, 811, 946
LguI	GCTCTTC	1 cut(s)	915
LmnI	GCTCC	4 cut(s)	329, 335, 487, 587
Lsp1109I	GCAGC	6 cut(s)	200, 203, 206, 325, 391, 940
LweI	GCATC	1 cut(s)	185
MaeI	CTAG	2 cut(s)	900, 950
MaeII	ACGT	1 cut(s)	796
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	3 cut(s)	12, 813, 948
MboI	GATC	3 cut(s)	10, 811, 946
MboII	GAAGA	9 cut(s)	105, 225, 425, 456, 480, 650, 668, 878, 902
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	856
MlsI	TGGCCA	3 cut(s)	5, 50, 305
MluCI	AATT	3 cut(s)	153, 364, 882
MluNI	TGGCCA	3 cut(s)	5, 50, 305
Mox20I	TGGCCA	3 cut(s)	5, 50, 305
MscI	TGGCCA	3 cut(s)	5, 50, 305
MseI	TTAA	4 cut(s)	447, 513, 818, 860
Msp20I	TGGCCA	3 cut(s)	5, 50, 305
MspI	CCGG	2 cut(s)	279, 312
MspR9I	CCNGG	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	256
MvnI	CGCG	1 cut(s)	837
MwoI	GCNNNNNNNGC	4 cut(s)	41, 47, 194, 338
NcoI	CCATGG	1 cut(s)	45
NdeI	CATATG	1 cut(s)	655
NdeII	GATC	3 cut(s)	10, 811, 946
NlaIII	CATG	4 cut(s)	49, 618, 812, 830
NlaIV	GGNNCC	1 cut(s)	423
NmeAIII	GCCGAG	2 cut(s)	266, 331
NmuCI	GTSAC	1 cut(s)	295
NspI	RCATGY	1 cut(s)	830
NspV	TTCGAA	1 cut(s)	157
PciI	ACATGT	1 cut(s)	826
PciSI	GCTCTTC	1 cut(s)	915
PcsI	WCGNNNNNNNCGW	1 cut(s)	877
PfeI	GAWTC	1 cut(s)	127
PflMI	CCANNNNNTGG	1 cut(s)	656
PkrI	GCNGC	7 cut(s)	43, 190, 193, 196, 340, 381, 955
PscI	ACATGT	1 cut(s)	826
Psp1406I	AACGTT	1 cut(s)	796
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	423
PspPI	GGNCC	4 cut(s)	258, 267, 354, 451
PstNI	CAGNNNCTG	3 cut(s)	38, 299, 497
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	3 cut(s)	134, 788, 893
RsaNI	GTAC	3 cut(s)	133, 787, 892
SapI	GCTCTTC	1 cut(s)	915
SaqAI	TTAA	4 cut(s)	447, 513, 818, 860
SatI	GCNGC	7 cut(s)	42, 189, 192, 195, 339, 380, 954
Sau3AI	GATC	3 cut(s)	10, 811, 946
Sau96I	GGNCC	4 cut(s)	258, 267, 354, 451
ScrFI	CCNGG	1 cut(s)	256
SduI	GDGCHC	1 cut(s)	856
SfaNI	GCATC	1 cut(s)	185
SfcI	CTRYAG	1 cut(s)	30
SfuI	TTCGAA	1 cut(s)	157
SinI	GGWCC	1 cut(s)	267
Sse9I	AATT	3 cut(s)	153, 364, 882
SsiI	CCGC	3 cut(s)	42, 54, 270
SspMI	CTAG	2 cut(s)	900, 950
StyD4I	CCNGG	1 cut(s)	254
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	6 cut(s)	73, 295, 301, 667, 858, 936
TaiI	ACGT	1 cut(s)	799
TaqI	TCGA	3 cut(s)	157, 565, 850
TaqII	GACCGA	1 cut(s)	600
TasI	AATT	3 cut(s)	153, 364, 882
TatI	WGTACW	1 cut(s)	786
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	4 cut(s)	447, 513, 818, 860
Tru9I	TTAA	4 cut(s)	447, 513, 818, 860
TscAI	CASTG	6 cut(s)	43, 76, 231, 280, 304, 498
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	6 cut(s)	188, 191, 194, 338, 379, 953
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	3 cut(s)	238, 593, 789
TspGWI	ACGGA	1 cut(s)	596
TspRI	CASTG	6 cut(s)	43, 76, 231, 280, 304, 498
Van91I	CCANNNNNTGG	1 cut(s)	656
VpaK11BI	GGWCC	1 cut(s)	267
XceI	RCATGY	1 cut(s)	830
XcmI	CCANNNNNNNNNTGG	2 cut(s)	43, 415
XspI	CTAG	2 cut(s)	900, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.