Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000035.1

Orthogroup ID

OG0007084

Physical Location & Seq

Genomic Coordinates Reverse (-)

155297 .. 161298

Gene Structure 6002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000035.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atggctatagatcccaaccacgccaccgccaccaccaccggcgccgccgccacacggccgctgagacccatagctcccgcacctcctcctgctcctcctgctcatatgtacacggtccctattcgggcccaatcttcacctggtgcacttgtctacccgtctgcccgcgctccctacccatctcccctcaattttcattcccatccttattctcctcatcttcatcctccgcctcctcctcttccctcgtaccaatctcctcttccccctccaattaagcccgaccttcgctttcctggcctcgttgctcctccgtcttcagttcccgactccaatggcatcagggataaaagcagagatgacactctttctgtcattcaagatcggaaagtcaggataacagatggagcttctgtatatgcgctttgtcggtcatggctgaggaacggttctcctgaagaatgtcagacacgatatggtgatgctacaaggtctcttccaaagccttcacccatacctatggcaagtgcgactccgccaaagaaggaagaaggcgataaaaaagaagacattgaagacaaggatgaggaatcccttgaacatgtatcaccagaagatctgttaaaaagacatgtcaaacgtgctagaaaggttcgagcacgattaagagaagaacgtttacggcgcattgcaaggtacaagtctaggcttgctcttctccttcctccactggtagaacagttccgaaatgatctagctgctggaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIN37

Protein Analysis

256

Amino Acids

28.24

Weight (kDa)

9.72

Isoelectric Point (pI)

75.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04930 AT1G04930 AT1G04930 AT2G32840 AT2G32840
fragaria_vesca	FvH4_7g00160 FvH4_7g00160 FvH4_7g00160
malus_domestica	MD02G1318600.v1.1 MD07G1002600.v1.1
prunus_persica	Prupe.2G004100_v2.0.a1 Prupe.2G004100_v2.0.a1 Prupe.2G004100_v2.0.a1 Prupe.2G004100_v2.0.a1
pyrus_communis	pycom02g26690 pycom07g00260
rosa_chinensis	RchiOBHm_Chr1g0313411
rosa_laevigata	RLG00000030799
rosa_multiflora	Rmu_sc0000035.1_g000031 Rmu_sc0000035.1_g000045
rosa_roxburghii	Rroxscaffold_4G00332210
rosa_rugosa	RorugPtG0004800
rosa_samantha	Rh1AG003400 Rh1CG001300
rosa_wichuraiana	Rw1G000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	1 cut(s)	168
AciI	CCGC	8 cut(s)	27, 45, 48, 59, 78, 166, 230, 536
AclI	AACGTT	1 cut(s)	676
AclWI	GGATC	1 cut(s)	5
AcoI	YGGCCR	1 cut(s)	56
AcuI	CTGAAG	2 cut(s)	303, 477
AcyI	GRCGYC	1 cut(s)	42
AdeI	CACNNNGTG	1 cut(s)	143
AfaI	GTAC	3 cut(s)	110, 251, 698
AfiI	CCNNNNNNNGG	2 cut(s)	54, 124
AflIII	ACRYGT	2 cut(s)	601, 631
AgsI	TTSAA	3 cut(s)	380, 575, 599
AjnI	CCWGG	2 cut(s)	139, 295
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AluBI	AGCT	3 cut(s)	74, 410, 758
AluI	AGCT	3 cut(s)	74, 410, 758
Alw21I	GWGCWC	2 cut(s)	148, 661
Alw26I	GTCTC	2 cut(s)	58, 498
Alw44I	GTGCAC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	5
AoxI	GGCC	3 cut(s)	56, 126, 298
ApaI	GGGCCC	1 cut(s)	130
ApaLI	GTGCAC	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	758
AspLEI	GCGC	4 cut(s)	44, 170, 424, 687
AspS9I	GGNCC	3 cut(s)	115, 126, 127
AsuHPI	GGTGA	4 cut(s)	129, 491, 501, 600
AvaII	GGWCC	1 cut(s)	115
BaeGI	GKGCMC	2 cut(s)	130, 148
BanI	GGYRCC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	130
BarI	GAAGNNNNNNTAC	2 cut(s)	663, 695
BbsI	GAAGAC	3 cut(s)	309, 573, 582
Bbv12I	GWGCWC	2 cut(s)	148, 661
BbvCI	CCTCAGC	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	745
BccI	CCATC	3 cut(s)	187, 210, 398
BceAI	ACGGC	2 cut(s)	71, 698
BciT130I	CCWGG	2 cut(s)	141, 297
BcoDI	GTCTC	2 cut(s)	58, 498
BfaI	CTAG	3 cut(s)	645, 705, 755
BfmI	CTRYAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	45
BglII	AGATCT	1 cut(s)	616
BisI	GCNGC	4 cut(s)	45, 48, 59, 759
BlsI	GCNGC	4 cut(s)	46, 49, 60, 760
Bme1390I	CCNGG	2 cut(s)	141, 297
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	3 cut(s)	115, 126, 127
BmiI	GGNNCC	3 cut(s)	43, 117, 128
BmrFI	CCNGG	2 cut(s)	141, 297
BmsI	GCATC	2 cut(s)	348, 472
BpiI	GAAGAC	3 cut(s)	309, 573, 582
Bpu10I	CCTNAGC	1 cut(s)	440
BsaHI	GRCGYC	1 cut(s)	42
BsaI	GGTCTC	2 cut(s)	58, 498
BsaXI	ACNNNNNCTCC	2 cut(s)	399, 429
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 124
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	735
Bse3DI	GCAATG	1 cut(s)	687
BseBI	CCWGG	2 cut(s)	141, 297
BseGI	GGATG	3 cut(s)	202, 223, 589
BseLI	CCNNNNNNNGG	2 cut(s)	54, 124
BseMI	GCAATG	1 cut(s)	687
BseMII	CTCAG	2 cut(s)	53, 431
BseNI	ACTGG	1 cut(s)	735
BseRI	GAGGAG	7 cut(s)	75, 84, 204, 225, 228, 249, 300
BseSI	GKGCMC	2 cut(s)	130, 148
BseX3I	CGGCCG	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	745
Bsh1236I	CGCG	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	59
BshFI	GGCC	3 cut(s)	58, 128, 300
BshNI	GGYRCC	1 cut(s)	41
BsiEI	CGRYCG	1 cut(s)	59
BsiHKAI	GWGCWC	2 cut(s)	148, 661
BsiSI	CCGG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	54, 124
BsmAI	GTCTC	2 cut(s)	58, 498
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	3 cut(s)	58, 128, 300
Bso31I	GGTCTC	2 cut(s)	58, 498
Bsp120I	GGGCCC	1 cut(s)	126
Bsp1286I	GDGCHC	3 cut(s)	130, 148, 661
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	4 cut(s)	10, 382, 616, 751
BspACI	CCGC	8 cut(s)	27, 45, 48, 59, 78, 166, 230, 536
BspANI	GGCC	3 cut(s)	58, 128, 300
BspCNI	CTCAG	2 cut(s)	54, 432
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	3 cut(s)	43, 117, 128
BspPI	GGATC	1 cut(s)	5
BspQI	GCTCTTC	1 cut(s)	720
BspT107I	GGYRCC	1 cut(s)	41
BspTNI	GGTCTC	2 cut(s)	58, 498
BsrDI	GCAATG	1 cut(s)	687
BsrFI	RCCGGY	1 cut(s)	38
BsrGI	TGTACA	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	735
BssAI	RCCGGY	1 cut(s)	38
BssMI	GATC	4 cut(s)	10, 382, 616, 751
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	2 cut(s)	141, 297
Bst4CI	ACNGT	3 cut(s)	115, 449, 741
Bst6I	CTCTTC	4 cut(s)	246, 267, 501, 720
BstACI	GRCGYC	1 cut(s)	42
BstAUI	TGTACA	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	166, 711
BstDEI	CTNAG	2 cut(s)	62, 440
BstF5I	GGATG	3 cut(s)	202, 223, 589
BstFNI	CGCG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	4 cut(s)	44, 170, 424, 687
BstKTI	GATC	4 cut(s)	13, 385, 619, 754
BstMAI	GTCTC	2 cut(s)	58, 498
BstMBI	GATC	4 cut(s)	10, 382, 616, 751
BstMCI	CGRYCG	1 cut(s)	59
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 297
BstNI	CCWGG	2 cut(s)	141, 297
BstNSI	RCATGY	2 cut(s)	605, 635
BstSCI	CCNGG	2 cut(s)	139, 295
BstSFI	CTRYAG	1 cut(s)	6
BstSLI	GKGCMC	2 cut(s)	130, 148
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	745
BstV2I	GAAGAC	3 cut(s)	309, 573, 582
BstX2I	RGATCY	2 cut(s)	10, 616
BstXI	CCANNNNNNTGG	1 cut(s)	520
BstYI	RGATCY	2 cut(s)	10, 616
BstZI	CGGCCG	1 cut(s)	56
BsuRI	GGCC	3 cut(s)	58, 128, 300
BtsCI	GGATG	3 cut(s)	202, 223, 589
BtsIMutI	CAGTG	1 cut(s)	728
Cac8I	GCNNGC	2 cut(s)	166, 711
CfoI	GCGC	4 cut(s)	44, 170, 424, 687
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	3 cut(s)	115, 126, 127
CsiI	ACCWGGT	1 cut(s)	139
Csp6I	GTAC	3 cut(s)	109, 250, 697
CviAII	CATG	3 cut(s)	435, 602, 632
CviQI	GTAC	3 cut(s)	109, 250, 697
DdeI	CTNAG	2 cut(s)	62, 440
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	4 cut(s)	12, 384, 618, 753
DpnII	GATC	4 cut(s)	10, 382, 616, 751
DraIII	CACNNNGTG	1 cut(s)	143
EaeI	YGGCCR	1 cut(s)	56
EagI	CGGCCG	1 cut(s)	56
Eam1104I	CTCTTC	4 cut(s)	246, 267, 501, 720
EarI	CTCTTC	4 cut(s)	246, 267, 501, 720
EciI	GGCGGA	2 cut(s)	219, 525
EclXI	CGGCCG	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	130
Eco31I	GGTCTC	2 cut(s)	58, 498
Eco47I	GGWCC	1 cut(s)	115
Eco52I	CGGCCG	1 cut(s)	56
Eco57I	CTGAAG	2 cut(s)	303, 477
EcoRII	CCWGG	2 cut(s)	139, 295
EcoT38I	GRGCYC	1 cut(s)	130
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
FaeI	CATG	3 cut(s)	438, 605, 635
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	3 cut(s)	434, 601, 631
FauI	CCCGC	2 cut(s)	85, 173
FauNDI	CATATG	1 cut(s)	105
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	4 cut(s)	45, 48, 59, 759
FokI	GGATG	3 cut(s)	189, 210, 596
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	4 cut(s)	45, 48, 59, 759
FspBI	CTAG	3 cut(s)	645, 705, 755
GlaI	GCGC	4 cut(s)	43, 169, 423, 686
GluI	GCNGC	4 cut(s)	45, 48, 59, 759
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	3 cut(s)	58, 128, 300
HapII	CCGG	1 cut(s)	39
HhaI	GCGC	4 cut(s)	44, 170, 424, 687
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	438, 605, 635
Hin6I	GCGC	4 cut(s)	42, 168, 422, 685
HinP1I	GCGC	4 cut(s)	42, 168, 422, 685
HinfI	GANTC	3 cut(s)	329, 532, 590
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	4 cut(s)	129, 491, 501, 600
Hpy166II	GTNNAC	4 cut(s)	111, 146, 154, 680
Hpy188I	TCNGA	3 cut(s)	387, 468, 746
Hpy188III	TCNNGA	4 cut(s)	326, 380, 394, 455
Hpy8I	GTNNAC	4 cut(s)	111, 146, 154, 680
HpyAV	CCTTC	5 cut(s)	296, 516, 538, 545, 731
HpyCH4III	ACNGT	3 cut(s)	115, 449, 741
HpyCH4IV	ACGT	2 cut(s)	640, 676
HpyCH4V	TGCA	2 cut(s)	146, 692
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 297
HpyF3I	CTNAG	2 cut(s)	62, 440
HpySE526I	ACGT	2 cut(s)	640, 676
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	438, 605, 635
HspAI	GCGC	4 cut(s)	42, 168, 422, 685
KasI	GGCGCC	1 cut(s)	41
Kzo9I	GATC	4 cut(s)	10, 382, 616, 751
LguI	GCTCTTC	1 cut(s)	720
LmnI	GCTCC	5 cut(s)	79, 97, 175, 313, 407
Lsp1109I	GCAGC	1 cut(s)	745
LweI	GCATC	2 cut(s)	348, 472
MabI	ACCWGGT	1 cut(s)	139
MaeI	CTAG	3 cut(s)	645, 705, 755
MaeII	ACGT	2 cut(s)	640, 676
MalI	GATC	4 cut(s)	12, 384, 618, 753
MboI	GATC	4 cut(s)	10, 382, 616, 751
MflI	RGATCY	2 cut(s)	10, 616
MhlI	GDGCHC	3 cut(s)	130, 148, 661
MluCI	AATT	3 cut(s)	190, 273, 766
Mly113I	GGCGCC	1 cut(s)	42
MlyI	GAGTC	2 cut(s)	323, 526
MseI	TTAA	3 cut(s)	276, 623, 665
MslI	CAYNNNNRTG	1 cut(s)	518
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	2 cut(s)	141, 297
MvaI	CCWGG	2 cut(s)	141, 297
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	98, 297
NarI	GGCGCC	1 cut(s)	42
NdeI	CATATG	1 cut(s)	105
NdeII	GATC	4 cut(s)	10, 382, 616, 751
NlaIII	CATG	3 cut(s)	438, 605, 635
NlaIV	GGNNCC	3 cut(s)	43, 117, 128
NspI	RCATGY	2 cut(s)	605, 635
PciI	ACATGT	2 cut(s)	601, 631
PciSI	GCTCTTC	1 cut(s)	720
PfeI	GAWTC	1 cut(s)	590
PkrI	GCNGC	4 cut(s)	46, 49, 60, 760
PleI	GAGTC	2 cut(s)	323, 526
PluTI	GGCGCC	1 cut(s)	45
PpsI	GAGTC	2 cut(s)	323, 526
PscI	ACATGT	2 cut(s)	601, 631
Psp1406I	AACGTT	1 cut(s)	676
Psp6I	CCWGG	2 cut(s)	139, 295
PspGI	CCWGG	2 cut(s)	139, 295
PspN4I	GGNNCC	3 cut(s)	43, 117, 128
PspOMI	GGGCCC	1 cut(s)	126
PspPI	GGNCC	3 cut(s)	115, 126, 127
PsuI	RGATCY	2 cut(s)	10, 616
RsaI	GTAC	3 cut(s)	110, 251, 698
RsaNI	GTAC	3 cut(s)	109, 250, 697
RseI	CAYNNNNRTG	1 cut(s)	518
SapI	GCTCTTC	1 cut(s)	720
SaqAI	TTAA	3 cut(s)	276, 623, 665
SatI	GCNGC	4 cut(s)	45, 48, 59, 759
Sau3AI	GATC	4 cut(s)	10, 382, 616, 751
Sau96I	GGNCC	3 cut(s)	115, 126, 127
SchI	GAGTC	2 cut(s)	323, 526
ScrFI	CCNGG	2 cut(s)	141, 297
SduI	GDGCHC	3 cut(s)	130, 148, 661
SexAI	ACCWGGT	1 cut(s)	139
SfaNI	GCATC	2 cut(s)	348, 472
SfcI	CTRYAG	1 cut(s)	6
SfoI	GGCGCC	1 cut(s)	43
SgrAI	CRCCGGYG	1 cut(s)	38
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	518
Sse9I	AATT	3 cut(s)	190, 273, 766
SsiI	CCGC	8 cut(s)	27, 45, 48, 59, 78, 166, 230, 536
SspDI	GGCGCC	1 cut(s)	41
SspMI	CTAG	3 cut(s)	645, 705, 755
StyD4I	CCNGG	2 cut(s)	139, 295
TaaI	ACNGT	3 cut(s)	115, 449, 741
TaiI	ACGT	2 cut(s)	643, 679
TaqI	TCGA	1 cut(s)	655
TaqII	GACCGA	1 cut(s)	420
TasI	AATT	3 cut(s)	190, 273, 766
TatI	WGTACW	1 cut(s)	108
TauI	GCSGC	3 cut(s)	47, 50, 61
TfiI	GAWTC	1 cut(s)	590
Tru1I	TTAA	3 cut(s)	276, 623, 665
Tru9I	TTAA	3 cut(s)	276, 623, 665
TscAI	CASTG	1 cut(s)	735
TseI	GCWGC	1 cut(s)	758
TspDTI	ATGAA	2 cut(s)	185, 212
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	1 cut(s)	735
VneI	GTGCAC	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	115
XceI	RCATGY	2 cut(s)	605, 635
XcmI	CCANNNNNNNNNTGG	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	3 cut(s)	645, 705, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.