Rroxscaffold_4G00332210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0007084
Physical Location & Seq
Forward (+)
66238361 .. 66244818
6458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00332210.1

Sequence Viewer

Length: 831 bp
ATGGCTATAGATCCCAACCACGCCACCGGCACCGGCACCACCACCGGCGCCGCCGCCACACGGACGCTGAGACCCATAGCTCCCGCACCTCCTCCTGCTCCTCCTGCTCATATGTACACGGTCCCTATTCGGGCCCAATCTTCACCTGGTGCACTAGTCTACCCATCTGCCCGCGCTCCCTACCCATCTCCCCTCAATTTTCATTCCCAGCCTCATCCTTATTCTCCTCATCTTCATCCTCCTCCTCCTCCTCTTCCCTCGTACCAATCTCCTCTTCCCCCTCCAATTAAGCCCGACCTTCGCTTTCCTGGCCTCGTAATACTACCCTCTTCTTCTGCTTTATATTCTACATTATCATCTTCTTGCCCGATTTATTCACTAAACGCATCTCCATCTCTCTCTGTATCAGGTTGCTCCTCCGTCTTCACTTCCCGACTCCAATGGCATCAGGTCAGGATAACAGATGGAGCTTCTCTATATGCGCTTTGTCGGTCATGGCTGAGGAACGGTGCTCCCGAAGAAAGTCAGACACGATATGGTGATGCTACAAGGTCTCTTCCAAAGCCTTCACCCATACCTATGGCAAGTGCGACTCCGCCAAAGAAGGAAGAAGGCGATAAAAAAGAAGACATTGAAGACAAGGATGAGGAATCCCTTGAACATGTATCACCAGAAGATCTGTTAAAAAGACATGTCAAACGTGCTAGAAAGGTTCGAGCACGATTAAGAGAAGAACGTCTGCGGCGCATTGCAAGGTACAAGTCTAGGCTTGCTCTTCTCCTTCCTCCACTGGTAGAACAGTTCCGAAATGATCTAGCTGCTGGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIN37

Protein Analysis

276

Amino Acids

30.19

Weight (kDa)

9.73

Isoelectric Point (pI)

78.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIN37 PF15306 152 - 260 8.8e-08 LIN37
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 29, 35, 47
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 174
AciI CCGC 6 cut(s) 51, 54, 84, 172, 596, 742
AclWI GGATC 1 cut(s) 5
AcyI GRCGYC 1 cut(s) 48
AdeI CACNNNGTG 1 cut(s) 149
AfaI GTAC 3 cut(s) 116, 263, 758
AfiI CCNNNNNNNGG 2 cut(s) 60, 130
AflIII ACRYGT 2 cut(s) 661, 691
AgsI TTSAA 2 cut(s) 635, 659
AhlI ACTAGT 1 cut(s) 154
AjnI CCWGG 2 cut(s) 145, 307
AjuI GAANNNNNNNTTGG 2 cut(s) 258, 290
AluBI AGCT 3 cut(s) 80, 470, 818
AluI AGCT 3 cut(s) 80, 470, 818
Alw21I GWGCWC 3 cut(s) 154, 514, 721
Alw26I GTCTC 2 cut(s) 64, 558
Alw44I GTGCAC 1 cut(s) 150
AlwI GGATC 1 cut(s) 5
AoxI GGCC 2 cut(s) 132, 310
ApaI GGGCCC 1 cut(s) 136
ApaLI GTGCAC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 818
AspLEI GCGC 4 cut(s) 50, 176, 484, 747
AspS9I GGNCC 3 cut(s) 121, 132, 133
AsuHPI GGTGA 4 cut(s) 135, 551, 561, 660
AvaII GGWCC 1 cut(s) 121
BaeGI GKGCMC 2 cut(s) 136, 154
BanI GGYRCC 3 cut(s) 29, 35, 47
BanII GRGCYC 1 cut(s) 136
BbsI GAAGAC 3 cut(s) 415, 633, 642
Bbv12I GWGCWC 3 cut(s) 154, 514, 721
BbvCI CCTCAGC 1 cut(s) 500
BbvI GCAGC 1 cut(s) 805
BccI CCATC 4 cut(s) 172, 193, 400, 458
BciT130I CCWGG 2 cut(s) 147, 309
BcoDI GTCTC 2 cut(s) 64, 558
BcuI ACTAGT 1 cut(s) 154
BfaI CTAG 4 cut(s) 155, 705, 765, 815
BfmI CTRYAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 51
BglII AGATCT 1 cut(s) 676
BisI GCNGC 4 cut(s) 51, 54, 743, 819
BlsI GCNGC 4 cut(s) 52, 55, 744, 820
Bme1390I CCNGG 2 cut(s) 147, 309
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 3 cut(s) 121, 132, 133
BmiI GGNNCC 5 cut(s) 31, 37, 49, 123, 134
BmrFI CCNGG 2 cut(s) 147, 309
BmsI GCATC 3 cut(s) 395, 454, 532
BpiI GAAGAC 3 cut(s) 415, 633, 642
Bpu10I CCTNAGC 1 cut(s) 500
BsaHI GRCGYC 1 cut(s) 48
BsaI GGTCTC 2 cut(s) 64, 558
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 130
Bse118I RCCGGY 3 cut(s) 26, 32, 44
Bse1I ACTGG 1 cut(s) 795
Bse3DI GCAATG 1 cut(s) 747
BseBI CCWGG 2 cut(s) 147, 309
BseGI GGATG 3 cut(s) 214, 235, 649
BseLI CCNNNNNNNGG 2 cut(s) 60, 130
BseMI GCAATG 1 cut(s) 747
BseMII CTCAG 2 cut(s) 59, 491
BseNI ACTGG 1 cut(s) 795
BseRI GAGGAG 9 cut(s) 81, 90, 216, 231, 234, 237, 240, 261, 406
BseSI GKGCMC 2 cut(s) 136, 154
BseXI GCAGC 1 cut(s) 805
BseYI CCCAGC 1 cut(s) 207
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 2 cut(s) 134, 312
BshNI GGYRCC 3 cut(s) 29, 35, 47
BsiHKAI GWGCWC 3 cut(s) 154, 514, 721
BsiSI CCGG 3 cut(s) 27, 33, 45
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 60, 130
BsmAI GTCTC 2 cut(s) 64, 558
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 2 cut(s) 134, 312
Bso31I GGTCTC 2 cut(s) 64, 558
Bsp120I GGGCCC 1 cut(s) 132
Bsp1286I GDGCHC 4 cut(s) 136, 154, 514, 721
Bsp1407I TGTACA 1 cut(s) 114
Bsp143I GATC 3 cut(s) 10, 676, 811
BspACI CCGC 6 cut(s) 51, 54, 84, 172, 596, 742
BspANI GGCC 2 cut(s) 134, 312
BspCNI CTCAG 2 cut(s) 60, 492
BspFNI CGCG 1 cut(s) 174
BspLI GGNNCC 5 cut(s) 31, 37, 49, 123, 134
BspPI GGATC 1 cut(s) 5
BspQI GCTCTTC 1 cut(s) 780
BspT107I GGYRCC 3 cut(s) 29, 35, 47
BspTNI GGTCTC 2 cut(s) 64, 558
BsrDI GCAATG 1 cut(s) 747
BsrFI RCCGGY 3 cut(s) 26, 32, 44
BsrGI TGTACA 1 cut(s) 114
BsrI ACTGG 1 cut(s) 795
BssAI RCCGGY 3 cut(s) 26, 32, 44
BssMI GATC 3 cut(s) 10, 676, 811
BssNI GRCGYC 1 cut(s) 48
Bst2UI CCWGG 2 cut(s) 147, 309
Bst4CI ACNGT 3 cut(s) 121, 509, 801
Bst6I CTCTTC 5 cut(s) 258, 279, 334, 561, 780
BstACI GRCGYC 1 cut(s) 48
BstAUI TGTACA 1 cut(s) 114
BstC8I GCNNGC 2 cut(s) 172, 771
BstDEI CTNAG 2 cut(s) 68, 500
BstF5I GGATG 3 cut(s) 214, 235, 649
BstFNI CGCG 1 cut(s) 174
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 4 cut(s) 50, 176, 484, 747
BstKTI GATC 3 cut(s) 13, 679, 814
BstMAI GTCTC 2 cut(s) 64, 558
BstMBI GATC 3 cut(s) 10, 676, 811
BstMWI GCNNNNNNNGC 2 cut(s) 104, 309
BstNI CCWGG 2 cut(s) 147, 309
BstNSI RCATGY 2 cut(s) 665, 695
BstSCI CCNGG 2 cut(s) 145, 307
BstSFI CTRYAG 1 cut(s) 6
BstSLI GKGCMC 2 cut(s) 136, 154
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 805
BstV2I GAAGAC 3 cut(s) 415, 633, 642
BstX2I RGATCY 2 cut(s) 10, 676
BstXI CCANNNNNNTGG 1 cut(s) 580
BstYI RGATCY 2 cut(s) 10, 676
BsuRI GGCC 2 cut(s) 134, 312
BtsCI GGATG 3 cut(s) 214, 235, 649
BtsIMutI CAGTG 1 cut(s) 788
Cac8I GCNNGC 2 cut(s) 172, 771
CfoI GCGC 4 cut(s) 50, 176, 484, 747
Cfr10I RCCGGY 3 cut(s) 26, 32, 44
Cfr13I GGNCC 3 cut(s) 121, 132, 133
CseI GACGC 1 cut(s) 73
CsiI ACCWGGT 1 cut(s) 145
Csp6I GTAC 3 cut(s) 115, 262, 757
CviAII CATG 3 cut(s) 495, 662, 692
CviQI GTAC 3 cut(s) 115, 262, 757
DdeI CTNAG 2 cut(s) 68, 500
DinI GGCGCC 1 cut(s) 49
DpnI GATC 3 cut(s) 12, 678, 813
DpnII GATC 3 cut(s) 10, 676, 811
DraIII CACNNNGTG 1 cut(s) 149
Eam1104I CTCTTC 5 cut(s) 258, 279, 334, 561, 780
EarI CTCTTC 5 cut(s) 258, 279, 334, 561, 780
EciI GGCGGA 1 cut(s) 585
Eco24I GRGCYC 1 cut(s) 136
Eco31I GGTCTC 2 cut(s) 64, 558
Eco47I GGWCC 1 cut(s) 121
EcoRII CCWGG 2 cut(s) 145, 307
EcoT38I GRGCYC 1 cut(s) 136
EgeI GGCGCC 1 cut(s) 49
EheI GGCGCC 1 cut(s) 49
FaeI CATG 3 cut(s) 498, 665, 695
FaqI GGGAC 1 cut(s) 107
FatI CATG 3 cut(s) 494, 661, 691
FauI CCCGC 2 cut(s) 91, 179
FauNDI CATATG 1 cut(s) 111
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 4 cut(s) 51, 54, 743, 819
FokI GGATG 3 cut(s) 201, 222, 656
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 4 cut(s) 51, 54, 743, 819
FspBI CTAG 4 cut(s) 155, 705, 765, 815
GlaI GCGC 4 cut(s) 49, 175, 483, 746
GluI GCNGC 4 cut(s) 51, 54, 743, 819
GsaI CCCAGC 1 cut(s) 211
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 2 cut(s) 134, 312
HapII CCGG 3 cut(s) 27, 33, 45
HgaI GACGC 1 cut(s) 73
HhaI GCGC 4 cut(s) 50, 176, 484, 747
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 3 cut(s) 498, 665, 695
Hin6I GCGC 4 cut(s) 48, 174, 482, 745
HinP1I GCGC 4 cut(s) 48, 174, 482, 745
HinfI GANTC 3 cut(s) 435, 592, 650
HpaII CCGG 3 cut(s) 27, 33, 45
HphI GGTGA 4 cut(s) 135, 551, 561, 660
Hpy166II GTNNAC 3 cut(s) 117, 152, 160
Hpy188I TCNGA 2 cut(s) 528, 806
Hpy188III TCNNGA 3 cut(s) 432, 454, 515
Hpy8I GTNNAC 3 cut(s) 117, 152, 160
HpyAV CCTTC 5 cut(s) 308, 576, 598, 605, 791
HpyCH4III ACNGT 3 cut(s) 121, 509, 801
HpyCH4IV ACGT 2 cut(s) 700, 736
HpyCH4V TGCA 2 cut(s) 152, 752
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 309
HpyF3I CTNAG 2 cut(s) 68, 500
HpySE526I ACGT 2 cut(s) 700, 736
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 3 cut(s) 498, 665, 695
HspAI GCGC 4 cut(s) 48, 174, 482, 745
KasI GGCGCC 1 cut(s) 47
Kzo9I GATC 3 cut(s) 10, 676, 811
LguI GCTCTTC 1 cut(s) 780
LmnI GCTCC 6 cut(s) 85, 103, 181, 419, 467, 517
Lsp1109I GCAGC 1 cut(s) 805
LweI GCATC 3 cut(s) 395, 454, 532
MabI ACCWGGT 1 cut(s) 145
MaeI CTAG 4 cut(s) 155, 705, 765, 815
MaeII ACGT 2 cut(s) 700, 736
MalI GATC 3 cut(s) 12, 678, 813
MboI GATC 3 cut(s) 10, 676, 811
MflI RGATCY 2 cut(s) 10, 676
MhlI GDGCHC 4 cut(s) 136, 154, 514, 721
MluCI AATT 3 cut(s) 196, 285, 826
Mly113I GGCGCC 1 cut(s) 48
MlyI GAGTC 2 cut(s) 429, 586
MseI TTAA 3 cut(s) 288, 683, 725
MslI CAYNNNNRTG 1 cut(s) 578
MspI CCGG 3 cut(s) 27, 33, 45
MspR9I CCNGG 2 cut(s) 147, 309
MvaI CCWGG 2 cut(s) 147, 309
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 104, 309
NarI GGCGCC 1 cut(s) 48
NdeI CATATG 1 cut(s) 111
NdeII GATC 3 cut(s) 10, 676, 811
NlaIII CATG 3 cut(s) 498, 665, 695
NlaIV GGNNCC 5 cut(s) 31, 37, 49, 123, 134
NspI RCATGY 2 cut(s) 665, 695
PciI ACATGT 2 cut(s) 661, 691
PciSI GCTCTTC 1 cut(s) 780
PcsI WCGNNNNNNNCGW 1 cut(s) 513
PfeI GAWTC 1 cut(s) 650
PkrI GCNGC 4 cut(s) 52, 55, 744, 820
PleI GAGTC 2 cut(s) 429, 586
PluTI GGCGCC 1 cut(s) 51
PpsI GAGTC 2 cut(s) 429, 586
PscI ACATGT 2 cut(s) 661, 691
Psp6I CCWGG 2 cut(s) 145, 307
PspFI CCCAGC 1 cut(s) 207
PspGI CCWGG 2 cut(s) 145, 307
PspN4I GGNNCC 5 cut(s) 31, 37, 49, 123, 134
PspOMI GGGCCC 1 cut(s) 132
PspPI GGNCC 3 cut(s) 121, 132, 133
PsuI RGATCY 2 cut(s) 10, 676
RsaI GTAC 3 cut(s) 116, 263, 758
RsaNI GTAC 3 cut(s) 115, 262, 757
RseI CAYNNNNRTG 1 cut(s) 578
SapI GCTCTTC 1 cut(s) 780
SaqAI TTAA 3 cut(s) 288, 683, 725
SatI GCNGC 4 cut(s) 51, 54, 743, 819
Sau3AI GATC 3 cut(s) 10, 676, 811
Sau96I GGNCC 3 cut(s) 121, 132, 133
SchI GAGTC 2 cut(s) 429, 586
ScrFI CCNGG 2 cut(s) 147, 309
SduI GDGCHC 4 cut(s) 136, 154, 514, 721
SexAI ACCWGGT 1 cut(s) 145
SfaNI GCATC 3 cut(s) 395, 454, 532
SfcI CTRYAG 1 cut(s) 6
SfoI GGCGCC 1 cut(s) 49
SgrAI CRCCGGYG 1 cut(s) 44
SinI GGWCC 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 578
SpeI ACTAGT 1 cut(s) 154
Sse9I AATT 3 cut(s) 196, 285, 826
SsiI CCGC 6 cut(s) 51, 54, 84, 172, 596, 742
SspDI GGCGCC 1 cut(s) 47
SspMI CTAG 4 cut(s) 155, 705, 765, 815
StyD4I CCNGG 2 cut(s) 145, 307
TaaI ACNGT 3 cut(s) 121, 509, 801
TaiI ACGT 2 cut(s) 703, 739
TaqI TCGA 1 cut(s) 715
TaqII GACCGA 1 cut(s) 480
TasI AATT 3 cut(s) 196, 285, 826
TatI WGTACW 1 cut(s) 114
TauI GCSGC 3 cut(s) 53, 56, 745
TfiI GAWTC 1 cut(s) 650
Tru1I TTAA 3 cut(s) 288, 683, 725
Tru9I TTAA 3 cut(s) 288, 683, 725
TscAI CASTG 1 cut(s) 795
TseI GCWGC 1 cut(s) 818
TspDTI ATGAA 2 cut(s) 191, 224
TspGWI ACGGA 2 cut(s) 76, 409
TspRI CASTG 1 cut(s) 795
VneI GTGCAC 1 cut(s) 150
VpaK11BI GGWCC 1 cut(s) 121
XceI RCATGY 2 cut(s) 665, 695
XcmI CCANNNNNNNNNTGG 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 4 cut(s) 155, 705, 765, 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.