Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007084

Physical Location & Seq

Genomic Coordinates Forward (+)

24487975 .. 24494360

Gene Structure 6386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g26690.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGACCATAGATCCCAACCACACCACCGCTTCAGCCGCCGCCAACATGGCCAACGCCGGAGCCGCCGCACACAACACAACCACGACGAGGCCGGTAAGACCTGCCGTATCATCTCCTCTTCCTTCTAATCTTTACGCAGCCCCATCCCTCCAAATTCGGACCCAATCGCCATCATCATCACCAGTAGCACCAGCAGCTGCTAATCATCAGGGGGTTCTGTACCCACTGGCTTCCTCTGGCCGAGGCTTTATTCCTCGGCCCATTCGTCCCGCCGCCGCTGCCGGAGGCGAACCCGCACTCATGGTGGCCAACGCCGGAGCTGTGTATCCATCTCGGCCCCTACTCAATTTCCCTCCTCAGCAGCCTATTCCTGTGCATTTGATAAGACCCAACTACAGCTTAGCACCGTCTCCTCTTCCTCCTCTTATTAGGGGCCTTCCCCTTTCCTATGCTACTCCTGAGGTTGCTCCATCTTCAGTTCCTGACAGCAATGGTTTTAAAGATATTAGGGATAAAAGCAAAGATGATAACTTAGCTGTCATTAGAGGTCGAAAAGTCAGGATGACAGATGGAGCTTCTCTATATGTGCACTGTCGGTCATGGTTGAGGAACGGTTTTCCTGAAGAAATTCAGCCCCAATATGGTGATGCTGTAAGGTCTCTTCCGAGACCTTCACCAATACCTATGGCAAGTGCTACTCTTCAAAAGGAGGGAGGTGAAGCAGAGGAAAAAGAAGAAAAAGGAGATGATAACGAGGAAGAGGCTGAGGAACACATTGAATGTTTATCACCACATGATCTGTTAGAAAGACATGTCAAACGTGCCAGAAAAGTTCGAGCACGATTAAGAGAGGAACGCTTACTGCGAATTGCAAGGTACAAGTCTAGGCTTGCTCTTCTCCTTCCTCCCCTGGTAGAACAGTTCAGAAATGATCTAGCTTCTGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIN37

Protein Analysis

317

Amino Acids

34.22

Weight (kDa)

9.39

Isoelectric Point (pI)

69.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04930 AT1G04930 AT1G04930 AT2G32840 AT2G32840
fragaria_vesca	FvH4_7g00160 FvH4_7g00160 FvH4_7g00160
malus_domestica	MD02G1318600.v1.1 MD07G1002600.v1.1
prunus_persica	Prupe.2G004100_v2.0.a1 Prupe.2G004100_v2.0.a1 Prupe.2G004100_v2.0.a1 Prupe.2G004100_v2.0.a1
pyrus_communis	pycom02g26690 pycom07g00260
rosa_chinensis	RchiOBHm_Chr1g0313411
rosa_laevigata	RLG00000030799
rosa_multiflora	Rmu_sc0000035.1_g000031 Rmu_sc0000035.1_g000045
rosa_roxburghii	Rroxscaffold_4G00332210
rosa_rugosa	RorugPtG0004800
rosa_samantha	Rh1AG003400 Rh1CG001300
rosa_wichuraiana	Rw1G000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	109
AciI	CCGC	9 cut(s)	27, 36, 39, 63, 66, 270, 273, 276, 294
AclWI	GGATC	1 cut(s)	5
AcoI	YGGCCR	3 cut(s)	48, 238, 306
AcsI	RAATTY	2 cut(s)	153, 627
AcuI	CTGAAG	3 cut(s)	15, 459, 642
AfaI	GTAC	2 cut(s)	221, 878
AfiI	CCNNNNNNNGG	2 cut(s)	87, 641
AflIII	ACRYGT	1 cut(s)	811
AgsI	TTSAA	2 cut(s)	704, 779
AjnI	CCWGG	1 cut(s)	909
AluBI	AGCT	6 cut(s)	197, 320, 399, 536, 575, 938
AluI	AGCT	6 cut(s)	197, 320, 399, 536, 575, 938
Alw21I	GWGCWC	2 cut(s)	591, 841
Alw26I	GTCTC	3 cut(s)	414, 661, 663
Alw44I	GTGCAC	1 cut(s)	587
AlwI	GGATC	1 cut(s)	5
AlwNI	CAGNNNCTG	2 cut(s)	197, 482
AoxI	GGCC	7 cut(s)	48, 89, 238, 257, 306, 335, 433
ApaLI	GTGCAC	1 cut(s)	587
ApeKI	GCWGC	5 cut(s)	137, 194, 197, 278, 361
ApoI	RAATTY	2 cut(s)	153, 627
Asp700I	GAANNNNTTC	1 cut(s)	627
AspS9I	GGNCC	4 cut(s)	159, 258, 336, 433
AsuHPI	GGTGA	5 cut(s)	171, 656, 666, 728, 780
AvaII	GGWCC	1 cut(s)	159
AxyI	CCTNAGG	1 cut(s)	459
BaeGI	GKGCMC	1 cut(s)	591
BalI	TGGCCA	2 cut(s)	50, 308
BarI	GAAGNNNNNNTAC	2 cut(s)	645, 677
Bbv12I	GWGCWC	2 cut(s)	591, 841
BbvCI	CCTCAGC	2 cut(s)	357, 765
BbvI	GCAGC	5 cut(s)	149, 184, 206, 265, 373
BccI	CCATC	5 cut(s)	151, 178, 337, 478, 563
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	911
BciVI	GTATCC	1 cut(s)	336
BcoDI	GTCTC	3 cut(s)	414, 661, 663
BfaI	CTAG	2 cut(s)	885, 935
BfmI	CTRYAG	1 cut(s)	394
BfuAI	ACCTGC	1 cut(s)	109
BfuI	GTATCC	1 cut(s)	336
BglI	GCCNNNNNGGC	1 cut(s)	47
BlpI	GCTNAGC	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	911
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	4 cut(s)	159, 258, 336, 433
BmiI	GGNNCC	4 cut(s)	61, 161, 338, 434
BmrFI	CCNGG	1 cut(s)	911
BmsI	GCATC	1 cut(s)	637
Bpu10I	CCTNAGC	2 cut(s)	357, 765
Bpu1102I	GCTNAGC	1 cut(s)	400
BsaI	GGTCTC	2 cut(s)	661, 663
BsaJI	CCNNGG	3 cut(s)	241, 254, 909
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 641
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	2 cut(s)	182, 231
Bse21I	CCTNAGG	1 cut(s)	459
Bse3DI	GCAATG	1 cut(s)	496
BseBI	CCWGG	1 cut(s)	911
BseDI	CCNNGG	3 cut(s)	241, 254, 909
BseGI	GGATG	2 cut(s)	143, 567
BseLI	CCNNNNNNNGG	2 cut(s)	87, 641
BseMI	GCAATG	1 cut(s)	496
BseMII	CTCAG	3 cut(s)	371, 450, 756
BseNI	ACTGG	2 cut(s)	182, 231
BseRI	GAGGAG	4 cut(s)	105, 345, 402, 411
BseSI	GKGCMC	1 cut(s)	591
BseXI	GCAGC	5 cut(s)	149, 184, 206, 265, 373
BshFI	GGCC	7 cut(s)	50, 91, 240, 259, 308, 337, 435
BsiHKAI	GWGCWC	2 cut(s)	591, 841
BsiSI	CCGG	4 cut(s)	57, 92, 282, 315
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	87, 641
BsmAI	GTCTC	3 cut(s)	414, 661, 663
BsmBI	CGTCTC	1 cut(s)	414
BsmFI	GGGAC	1 cut(s)	252
BsnI	GGCC	7 cut(s)	50, 91, 240, 259, 308, 337, 435
Bso31I	GGTCTC	2 cut(s)	661, 663
Bsp1286I	GDGCHC	2 cut(s)	591, 841
Bsp143I	GATC	3 cut(s)	10, 796, 931
Bsp1720I	GCTNAGC	1 cut(s)	400
BspACI	CCGC	9 cut(s)	27, 36, 39, 63, 66, 270, 273, 276, 294
BspANI	GGCC	7 cut(s)	50, 91, 240, 259, 308, 337, 435
BspCNI	CTCAG	3 cut(s)	370, 451, 757
BspLI	GGNNCC	4 cut(s)	61, 161, 338, 434
BspMI	ACCTGC	1 cut(s)	109
BspPI	GGATC	1 cut(s)	5
BspQI	GCTCTTC	1 cut(s)	900
BspTNI	GGTCTC	2 cut(s)	661, 663
BsrDI	GCAATG	1 cut(s)	496
BsrFI	RCCGGY	1 cut(s)	91
BsrI	ACTGG	2 cut(s)	182, 231
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	3 cut(s)	241, 254, 909
BssMI	GATC	3 cut(s)	10, 796, 931
Bst2UI	CCWGG	1 cut(s)	911
Bst4CI	ACNGT	4 cut(s)	408, 593, 614, 921
Bst6I	CTCTTC	6 cut(s)	123, 420, 666, 705, 753, 900
BstC8I	GCNNGC	1 cut(s)	891
BstDEI	CTNAG	5 cut(s)	357, 400, 459, 532, 765
BstF5I	GGATG	2 cut(s)	143, 567
BstKTI	GATC	3 cut(s)	13, 799, 934
BstMAI	GTCTC	3 cut(s)	414, 661, 663
BstMBI	GATC	3 cut(s)	10, 796, 931
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 47, 62, 194, 278
BstNI	CCWGG	1 cut(s)	911
BstNSI	RCATGY	1 cut(s)	815
BstSCI	CCNGG	1 cut(s)	909
BstSFI	CTRYAG	1 cut(s)	394
BstSLI	GKGCMC	1 cut(s)	591
BstV1I	GCAGC	5 cut(s)	149, 184, 206, 265, 373
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
Bsu36I	CCTNAGG	1 cut(s)	459
BsuI	GTATCC	1 cut(s)	336
BsuRI	GGCC	7 cut(s)	50, 91, 240, 259, 308, 337, 435
BtsCI	GGATG	2 cut(s)	143, 567
BtsIMutI	CAGTG	2 cut(s)	224, 589
BveI	ACCTGC	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	891
CaiI	CAGNNNCTG	2 cut(s)	197, 482
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	4 cut(s)	159, 258, 336, 433
Csp6I	GTAC	2 cut(s)	220, 877
CviAII	CATG	5 cut(s)	46, 301, 600, 794, 812
CviQI	GTAC	2 cut(s)	220, 877
DdeI	CTNAG	5 cut(s)	357, 400, 459, 532, 765
DpnI	GATC	3 cut(s)	12, 798, 933
DpnII	GATC	3 cut(s)	10, 796, 931
DraI	TTTAAA	1 cut(s)	499
EaeI	YGGCCR	3 cut(s)	48, 238, 306
Eam1104I	CTCTTC	6 cut(s)	123, 420, 666, 705, 753, 900
EarI	CTCTTC	6 cut(s)	123, 420, 666, 705, 753, 900
Eco31I	GGTCTC	2 cut(s)	661, 663
Eco47I	GGWCC	1 cut(s)	159
Eco57I	CTGAAG	3 cut(s)	15, 459, 642
Eco81I	CCTNAGG	1 cut(s)	459
EcoO109I	RGGNCCY	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	909
Esp3I	CGTCTC	1 cut(s)	414
FaeI	CATG	5 cut(s)	49, 304, 603, 797, 815
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	5 cut(s)	45, 300, 599, 793, 811
FauI	CCCGC	2 cut(s)	277, 301
FokI	GGATG	2 cut(s)	130, 574
FspBI	CTAG	2 cut(s)	885, 935
HaeIII	GGCC	7 cut(s)	50, 91, 240, 259, 308, 337, 435
HapII	CCGG	4 cut(s)	57, 92, 282, 315
Hin1II	CATG	5 cut(s)	49, 304, 603, 797, 815
HpaII	CCGG	4 cut(s)	57, 92, 282, 315
HphI	GGTGA	5 cut(s)	171, 656, 666, 728, 780
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	3 cut(s)	159, 666, 926
Hpy188III	TCNNGA	5 cut(s)	458, 482, 559, 620, 942
Hpy8I	GTNNAC	1 cut(s)	589
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	4 cut(s)	132, 446, 681, 911
HpyCH4III	ACNGT	4 cut(s)	408, 593, 614, 921
HpyCH4IV	ACGT	1 cut(s)	820
HpyCH4V	TGCA	3 cut(s)	376, 589, 872
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 47, 62, 194, 278
HpyF3I	CTNAG	5 cut(s)	357, 400, 459, 532, 765
HpySE526I	ACGT	1 cut(s)	820
Hsp92II	CATG	5 cut(s)	49, 304, 603, 797, 815
Kzo9I	GATC	3 cut(s)	10, 796, 931
LguI	GCTCTTC	1 cut(s)	900
LmnI	GCTCC	4 cut(s)	59, 317, 472, 572
Lsp1109I	GCAGC	5 cut(s)	149, 184, 206, 265, 373
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	2 cut(s)	885, 935
MaeII	ACGT	1 cut(s)	820
MalI	GATC	3 cut(s)	12, 798, 933
MboI	GATC	3 cut(s)	10, 796, 931
MboII	GAAGA	9 cut(s)	110, 407, 465, 635, 653, 692, 746, 770, 887
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	2 cut(s)	591, 841
MlsI	TGGCCA	2 cut(s)	50, 308
MluCI	AATT	4 cut(s)	153, 346, 627, 867
MluNI	TGGCCA	2 cut(s)	50, 308
Mox20I	TGGCCA	2 cut(s)	50, 308
MroXI	GAANNNNTTC	1 cut(s)	627
MscI	TGGCCA	2 cut(s)	50, 308
MseI	TTAA	2 cut(s)	498, 845
Msp20I	TGGCCA	2 cut(s)	50, 308
MspA1I	CMGCKG	2 cut(s)	197, 278
MspI	CCGG	4 cut(s)	57, 92, 282, 315
MspR9I	CCNGG	1 cut(s)	911
MvaI	CCWGG	1 cut(s)	911
MwoI	GCNNNNNNNGC	5 cut(s)	35, 47, 62, 194, 278
NdeII	GATC	3 cut(s)	10, 796, 931
NlaIII	CATG	5 cut(s)	49, 304, 603, 797, 815
NlaIV	GGNNCC	4 cut(s)	61, 161, 338, 434
NmeAIII	GCCGAG	3 cut(s)	235, 266, 313
NspI	RCATGY	1 cut(s)	815
PciI	ACATGT	1 cut(s)	811
PciSI	GCTCTTC	1 cut(s)	900
PcsI	WCGNNNNNNNCGW	2 cut(s)	262, 862
PdmI	GAANNNNTTC	1 cut(s)	627
PscI	ACATGT	1 cut(s)	811
Psp6I	CCWGG	1 cut(s)	909
PspGI	CCWGG	1 cut(s)	909
PspN4I	GGNNCC	4 cut(s)	61, 161, 338, 434
PspPI	GGNCC	4 cut(s)	159, 258, 336, 433
PstNI	CAGNNNCTG	2 cut(s)	197, 482
PsuI	RGATCY	1 cut(s)	10
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	2 cut(s)	221, 878
RsaNI	GTAC	2 cut(s)	220, 877
SapI	GCTCTTC	1 cut(s)	900
SaqAI	TTAA	2 cut(s)	498, 845
Sau3AI	GATC	3 cut(s)	10, 796, 931
Sau96I	GGNCC	4 cut(s)	159, 258, 336, 433
ScrFI	CCNGG	1 cut(s)	911
SduI	GDGCHC	2 cut(s)	591, 841
SfaNI	GCATC	1 cut(s)	637
SfcI	CTRYAG	1 cut(s)	394
SinI	GGWCC	1 cut(s)	159
Sse9I	AATT	4 cut(s)	153, 346, 627, 867
SsiI	CCGC	9 cut(s)	27, 36, 39, 63, 66, 270, 273, 276, 294
SspMI	CTAG	2 cut(s)	885, 935
StyD4I	CCNGG	1 cut(s)	909
TaaI	ACNGT	4 cut(s)	408, 593, 614, 921
TaiI	ACGT	1 cut(s)	823
TaqI	TCGA	2 cut(s)	550, 835
TaqII	GACCGA	1 cut(s)	585
TasI	AATT	4 cut(s)	153, 346, 627, 867
TauI	GCSGC	6 cut(s)	38, 41, 65, 68, 275, 278
Tru1I	TTAA	2 cut(s)	498, 845
Tru9I	TTAA	2 cut(s)	498, 845
TscAI	CASTG	2 cut(s)	231, 596
TseI	GCWGC	5 cut(s)	137, 194, 197, 278, 361
TspRI	CASTG	2 cut(s)	231, 596
VneI	GTGCAC	1 cut(s)	587
VpaK11BI	GGWCC	1 cut(s)	159
XapI	RAATTY	2 cut(s)	153, 627
XceI	RCATGY	1 cut(s)	815
XmnI	GAANNNNTTC	1 cut(s)	627
XspI	CTAG	2 cut(s)	885, 935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.