Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005984

Physical Location & Seq

Genomic Coordinates Reverse (-)

1490974 .. 1494248

Gene Structure 3275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G05170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGTCTGCGAAGATCAAAGGAGAGTATTCTTCTAGAAGCTTCGTATCGAGAAAATGGACGATATTACTCTGCTTAGGAAGCTTCTGCGTCGGAATGTTCTTCACCAATCGGATGTGGAATATTCCGGAATCTAAAGGCATGTCTCATCCATCTGTAACCGAAGCTGAGAGATTGAAGCTGGTCTCTGAAGGCTGCAATCCAAAAGCTCTTTACCAGAAAGAAGTCAAAAGAGATCCTCAGGCTTTGTTTGGAGAAGTAGCCAATACACATATTGCATTACAGACATTGGATAAGACCATTTCAAGCTTAGAGATGGAGTTAGCTGCAGCAAGGTCAGTTCAGGAATCTTTACAAAACGGTGCTCCTTTATCAGATGATATGGGGAAGAAGCAACCTCAGGAACAGAGACGGTTTTTGATGGTCGTTGGGATTAATACAGCTTTTAGTAGCAGAAAGAGAAGAGATTCTATTCGAGCAACTTGGATGCCTCAAGGTGAAAAAAGGAAGAGACTAGAAGAGGAGAAGGGGATTATCATCCGGTTTGTCATTGGTCACAGTGCCACGACCGGGGGAATTCTAGATCGAGCTATAGAAGCTGAGGACAGGAAGCATGGAGATTTCTTGAGACTGGACCATGTTGAAGGGTACCTAGAGTTGTCAGGCAAGACGAAAACTTACTTTTCTACAGCATTTTCGATGTGGGATGCAGATTTCTATGTCAAAGTAGATGATGATGTTCATGTCAATATAGCAACTCTTGGGGAAACTCTTGTTAGACACCGGAAAAAACCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAAAAGGGGTGAGGTACCATGAGCCAGAGTACTGGAAGTTTGGTGAAAATGGGAACAAATACTTCCGTCATGCTACTGGACAGTTATACGCCATTTCAAGGGACTTGGCTTCTTATATATCAATCAATCAGCATGTTCTTCACAAGTATGCGAACGAAGATGTTTCGCTAGGAGCTTGGTTTATCGGGATTGATGTTAAACACATTGATGATAGAAGATTATGCTGCGGAACTCCTCCTGGTAAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

361

Amino Acids

40.97

Weight (kDa)

9.26

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	16 - 112	7.1e-34	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	152 - 349	3.7e-54	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05170 AT1G05170 AT2G32430
fragaria_vesca	FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140
malus_domestica	MD09G1109300.v1.1 MD17G1097500.v1.1
prunus_persica	Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1
pyrus_communis	pycom09g03200 pycom17g09300
rosa_chinensis	RchiOBHm_Chr2g0159221
rosa_laevigata	RLG00000021144
rosa_multiflora	Rmu_sc0004528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090690
rosa_rugosa	Rorug02G0474800 Rorug02G0474900
rosa_samantha	Rh2AG541700 Rh2BG554300 Rh2CG524400 Rh2DG564100
rosa_wichuraiana	Rw2G044800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	645, 849
AccB1I	GGYRCC	2 cut(s)	645, 849
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	1 cut(s)	1062
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	1 cut(s)	573
AcuI	CTGAAG	1 cut(s)	207
AfaI	GTAC	3 cut(s)	647, 851, 866
AfiI	CCNNNNNNNGG	2 cut(s)	567, 933
AgsI	TTSAA	4 cut(s)	175, 303, 641, 933
AjnI	CCWGG	1 cut(s)	1072
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	5 cut(s)	147, 187, 400, 502, 619
AlwI	GGATC	1 cut(s)	227
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	1 cut(s)	820
ApeKI	GCWGC	4 cut(s)	192, 323, 326, 1059
ApoI	RAATTY	1 cut(s)	573
AseI	ATTAAT	1 cut(s)	432
Asp700I	GAANNNNTTC	1 cut(s)	463
Asp718I	GGTACC	2 cut(s)	645, 849
AspS9I	GGNCC	2 cut(s)	631, 821
AsuC2I	CCSGG	1 cut(s)	568
AsuHPI	GGTGA	4 cut(s)	94, 506, 856, 890
AvaII	GGWCC	1 cut(s)	631
AxyI	CCTNAGG	2 cut(s)	237, 396
BanI	GGYRCC	2 cut(s)	645, 849
Bbv12I	GWGCWC	1 cut(s)	364
BbvCI	CCTCAGC	1 cut(s)	597
BbvI	GCAGC	4 cut(s)	179, 310, 338, 1046
BccI	CCATC	3 cut(s)	157, 307, 412
BciT130I	CCWGG	1 cut(s)	1074
BcnI	CCSGG	1 cut(s)	568
BcoDI	GTCTC	5 cut(s)	147, 187, 400, 502, 619
BfaI	CTAG	5 cut(s)	33, 512, 578, 650, 1004
BfmI	CTRYAG	3 cut(s)	324, 588, 684
BisI	GCNGC	4 cut(s)	193, 324, 327, 1060
BlsI	GCNGC	4 cut(s)	194, 325, 328, 1061
BmcAI	AGTACT	1 cut(s)	866
Bme1390I	CCNGG	2 cut(s)	568, 1074
Bme18I	GGWCC	1 cut(s)	631
BmgT120I	GGNCC	2 cut(s)	631, 821
BmiI	GGNNCC	2 cut(s)	647, 851
BmrFI	CCNGG	2 cut(s)	568, 1074
BmsI	GCATC	2 cut(s)	474, 694
Bpu10I	CCTNAGC	2 cut(s)	73, 597
BpuEI	CTTGAG	2 cut(s)	474, 643
BpuMI	CCSGG	1 cut(s)	568
BsaBI	GATNNNNATC	1 cut(s)	533
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	2 cut(s)	567, 791
BsaWI	WCCGGW	3 cut(s)	124, 537, 780
Bsc4I	CCNNNNNNNGG	2 cut(s)	567, 933
Bse1I	ACTGG	3 cut(s)	633, 872, 916
Bse21I	CCTNAGG	2 cut(s)	237, 396
Bse8I	GATNNNNATC	1 cut(s)	533
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	1074
BseDI	CCNNGG	2 cut(s)	567, 791
BseGI	GGATG	5 cut(s)	117, 145, 489, 534, 709
BseJI	GATNNNNATC	1 cut(s)	533
BseLI	CCNNNNNNNGG	2 cut(s)	567, 933
BseMII	CTCAG	4 cut(s)	156, 251, 410, 588
BseNI	ACTGG	3 cut(s)	633, 872, 916
BseRI	GAGGAG	2 cut(s)	533, 1059
BseXI	GCAGC	4 cut(s)	179, 310, 338, 1046
Bsh1285I	CGRYCG	1 cut(s)	567
BshFI	GGCC	1 cut(s)	822
BshNI	GGYRCC	2 cut(s)	645, 849
BsiEI	CGRYCG	1 cut(s)	567
BsiHKAI	GWGCWC	1 cut(s)	364
BsiSI	CCGG	4 cut(s)	125, 538, 567, 781
BslFI	GGGAC	1 cut(s)	950
BslI	CCNNNNNNNGG	2 cut(s)	567, 933
BsmAI	GTCTC	5 cut(s)	147, 187, 400, 502, 619
BsmBI	CGTCTC	1 cut(s)	400
BsmFI	GGGAC	1 cut(s)	950
BsnI	GGCC	1 cut(s)	822
Bso31I	GGTCTC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp13I	TCCGGA	1 cut(s)	124
Bsp143I	GATC	3 cut(s)	12, 232, 580
BspACI	CCGC	1 cut(s)	1062
BspANI	GGCC	1 cut(s)	822
BspCNI	CTCAG	4 cut(s)	157, 250, 409, 589
BspEI	TCCGGA	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	647, 851
BspMAI	CTGCAG	1 cut(s)	328
BspPI	GGATC	1 cut(s)	227
BspT107I	GGYRCC	2 cut(s)	645, 849
BspTNI	GGTCTC	1 cut(s)	187
BsrI	ACTGG	3 cut(s)	633, 872, 916
BssECI	CCNNGG	2 cut(s)	567, 791
BssMI	GATC	3 cut(s)	12, 232, 580
Bst2UI	CCWGG	1 cut(s)	1074
Bst4CI	ACNGT	4 cut(s)	359, 411, 557, 918
Bst6I	CTCTTC	3 cut(s)	454, 500, 510
BstDEI	CTNAG	6 cut(s)	73, 165, 237, 307, 396, 597
BstDSI	CCRYGG	1 cut(s)	791
BstF5I	GGATG	5 cut(s)	117, 145, 489, 534, 709
BstKTI	GATC	3 cut(s)	15, 235, 583
BstMAI	GTCTC	5 cut(s)	147, 187, 400, 502, 619
BstMBI	GATC	3 cut(s)	12, 232, 580
BstMCI	CGRYCG	1 cut(s)	567
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 593
BstNI	CCWGG	1 cut(s)	1074
BstNSI	RCATGY	2 cut(s)	142, 971
BstSCI	CCNGG	2 cut(s)	566, 1072
BstSFI	CTRYAG	3 cut(s)	324, 588, 684
BstV1I	GCAGC	4 cut(s)	179, 310, 338, 1046
BstX2I	RGATCY	1 cut(s)	232
BstXI	CCANNNNNNTGG	1 cut(s)	867
BstYI	RGATCY	1 cut(s)	232
Bsu36I	CCTNAGG	2 cut(s)	237, 396
BsuRI	GGCC	1 cut(s)	822
BtgI	CCRYGG	1 cut(s)	791
BtsCI	GGATG	5 cut(s)	117, 145, 489, 534, 709
BtsIMutI	CAGTG	1 cut(s)	562
Cfr13I	GGNCC	2 cut(s)	631, 821
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	3 cut(s)	646, 850, 865
CviAII	CATG	8 cut(s)	139, 611, 635, 740, 811, 854, 905, 968
CviQI	GTAC	3 cut(s)	646, 850, 865
DdeI	CTNAG	6 cut(s)	73, 165, 237, 307, 396, 597
DpnI	GATC	3 cut(s)	14, 234, 582
DpnII	GATC	3 cut(s)	12, 232, 580
Eam1104I	CTCTTC	3 cut(s)	454, 500, 510
EarI	CTCTTC	3 cut(s)	454, 500, 510
Eco31I	GGTCTC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	631
Eco57I	CTGAAG	1 cut(s)	207
Eco81I	CCTNAGG	2 cut(s)	237, 396
EcoRI	GAATTC	1 cut(s)	573
EcoRII	CCWGG	1 cut(s)	1072
Esp3I	CGTCTC	1 cut(s)	400
FaeI	CATG	8 cut(s)	142, 614, 638, 743, 814, 857, 908, 971
FaqI	GGGAC	1 cut(s)	950
FatI	CATG	8 cut(s)	138, 610, 634, 739, 810, 853, 904, 967
Fnu4HI	GCNGC	4 cut(s)	193, 324, 327, 1060
FokI	GGATG	5 cut(s)	124, 132, 496, 521, 716
Fsp4HI	GCNGC	4 cut(s)	193, 324, 327, 1060
FspBI	CTAG	5 cut(s)	33, 512, 578, 650, 1004
GluI	GCNGC	4 cut(s)	193, 324, 327, 1060
HaeIII	GGCC	1 cut(s)	822
HapII	CCGG	4 cut(s)	125, 538, 567, 781
HgaI	GACGC	1 cut(s)	76
Hin1II	CATG	8 cut(s)	142, 614, 638, 743, 814, 857, 908, 971
HindIII	AAGCTT	3 cut(s)	37, 79, 304
HinfI	GANTC	3 cut(s)	128, 344, 464
HpaII	CCGG	4 cut(s)	125, 538, 567, 781
HphI	GGTGA	4 cut(s)	94, 506, 856, 890
Hpy188I	TCNGA	4 cut(s)	92, 111, 187, 373
Hpy188III	TCNNGA	8 cut(s)	33, 48, 125, 341, 398, 578, 622, 1021
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	3 cut(s)	182, 517, 635
HpyCH4III	ACNGT	4 cut(s)	359, 411, 557, 918
HpyCH4V	TGCA	5 cut(s)	195, 275, 326, 707, 810
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 593
HpyF3I	CTNAG	6 cut(s)	73, 165, 237, 307, 396, 597
Hsp92II	CATG	8 cut(s)	142, 614, 638, 743, 814, 857, 908, 971
Kpn2I	TCCGGA	1 cut(s)	124
KpnI	GGTACC	2 cut(s)	649, 853
Kzo9I	GATC	3 cut(s)	12, 232, 580
LmnI	GCTCC	2 cut(s)	367, 1007
Lsp1109I	GCAGC	4 cut(s)	179, 310, 338, 1046
LweI	GCATC	2 cut(s)	474, 694
MaeI	CTAG	5 cut(s)	33, 512, 578, 650, 1004
MaeIII	GTNAC	2 cut(s)	154, 551
MalI	GATC	3 cut(s)	14, 234, 582
MboI	GATC	3 cut(s)	12, 232, 580
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	1 cut(s)	573
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	8 cut(s)	246, 405, 498, 511, 592, 839, 840, 1080
MroI	TCCGGA	1 cut(s)	124
MroXI	GAANNNNTTC	1 cut(s)	463
MseI	TTAA	3 cut(s)	432, 1032, 1084
MslI	CAYNNNNRTG	2 cut(s)	981, 1041
MspI	CCGG	4 cut(s)	125, 538, 567, 781
MspR9I	CCNGG	2 cut(s)	568, 1074
MvaI	CCWGG	1 cut(s)	1074
MwoI	GCNNNNNNNGC	2 cut(s)	78, 593
NciI	CCSGG	1 cut(s)	568
NdeII	GATC	3 cut(s)	12, 232, 580
NlaIII	CATG	8 cut(s)	142, 614, 638, 743, 814, 857, 908, 971
NlaIV	GGNNCC	2 cut(s)	647, 851
NmuCI	GTSAC	1 cut(s)	551
NspI	RCATGY	2 cut(s)	142, 971
PdmI	GAANNNNTTC	1 cut(s)	463
PfeI	GAWTC	3 cut(s)	128, 344, 464
PkrI	GCNGC	4 cut(s)	194, 325, 328, 1061
PshBI	ATTAAT	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	1072
PspGI	CCWGG	1 cut(s)	1072
PspN4I	GGNNCC	2 cut(s)	647, 851
PspPI	GGNCC	2 cut(s)	631, 821
PstI	CTGCAG	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	3 cut(s)	647, 851, 866
RsaNI	GTAC	3 cut(s)	646, 850, 865
RseI	CAYNNNNRTG	2 cut(s)	981, 1041
SaqAI	TTAA	3 cut(s)	432, 1032, 1084
SatI	GCNGC	4 cut(s)	193, 324, 327, 1060
Sau3AI	GATC	3 cut(s)	12, 232, 580
Sau96I	GGNCC	2 cut(s)	631, 821
ScaI	AGTACT	1 cut(s)	866
ScrFI	CCNGG	2 cut(s)	568, 1074
SduI	GDGCHC	1 cut(s)	364
SfaNI	GCATC	2 cut(s)	474, 694
SfcI	CTRYAG	3 cut(s)	324, 588, 684
SinI	GGWCC	1 cut(s)	631
SmiMI	CAYNNNNRTG	2 cut(s)	981, 1041
SmlI	CTYRAG	2 cut(s)	489, 622
SmoI	CTYRAG	2 cut(s)	489, 622
Sse9I	AATT	1 cut(s)	573
SsiI	CCGC	1 cut(s)	1062
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	5 cut(s)	33, 512, 578, 650, 1004
StyD4I	CCNGG	2 cut(s)	566, 1072
TaaI	ACNGT	4 cut(s)	359, 411, 557, 918
TaqI	TCGA	4 cut(s)	47, 472, 583, 695
TasI	AATT	1 cut(s)	573
TatI	WGTACW	1 cut(s)	864
TfiI	GAWTC	3 cut(s)	128, 344, 464
Tru1I	TTAA	3 cut(s)	432, 1032, 1084
Tru9I	TTAA	3 cut(s)	432, 1032, 1084
TscAI	CASTG	1 cut(s)	562
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	4 cut(s)	192, 323, 326, 1059
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	2 cut(s)	728, 827
TspGWI	ACGGA	1 cut(s)	890
TspRI	CASTG	1 cut(s)	562
VpaK11BI	GGWCC	1 cut(s)	631
VspI	ATTAAT	1 cut(s)	432
XapI	RAATTY	1 cut(s)	573
XbaI	TCTAGA	2 cut(s)	32, 577
XceI	RCATGY	2 cut(s)	142, 971
XmnI	GAANNNNTTC	1 cut(s)	463
XspI	CTAG	5 cut(s)	33, 512, 578, 650, 1004
ZrmI	AGTACT	1 cut(s)	866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.