Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005984

Physical Location & Seq

Genomic Coordinates Reverse (-)

21899165 .. 21905036

Gene Structure 5872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G216900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGTCTTGGAAAAGCAGAGGAGAGCCATCTTCAAGAAGTGTTATTTCAAAAAAATGGACCCTTTTGCTTTGTTTAGGCTGCTTCTGTGCTGGAATGCTCTTCACCAATAGGATGTGGACTGTTCCTGAAAATAAAGGTATCACACGGAGAACAGCTATGGAAGAAGAACAATTAAAATTAGTTTCAGAGGGTTGCAACCCAAAAGCTTTGCATCAGAAGGAAGTAAAGCGCGAAAATAAGGACATTTTTGGGGAGGTTTCAAAGACTCATAATGCTATACAGACATTAGATAAGACTATATCAAATTTAGAGATGGAATTAGCTGCAGCAAGGGCAACACAGGAGTCTATACGTAGCGGCTCTCCTTTATCAGGAGATTCCAAAACCACTGATTCATCCGGGAAGAGAAGGTATTTAATGGTTGTTGGAATTAATACTGCTTTTAGCAGCCGTAAAAGAAGAGATTCGGTTCGTGCTACATGGATGCCACAAGGCGAGAAAAGAAGAAGGCTAGAGGAAGAGAAGGGTATCATCATTCGTTTCGTCATTGGTCATGGTGCCACGTCTGGAGGTATTCTAGACAGAGCTGTAGAAGCAGAGGACAGAAAGCATGGAGATCTCCTGAGGCTGGACCATGTTGAAGGGTACCTTGAATTGTCCGCCAAGACAAAGATATATTTTGCTACTGCTGTTGCTACGTGGGATGCAGATTTTTATGTCAAAGTTGATGATGATGTCCACGTAAATATAGCGACGCTAGGAGGAACTCTAGTCAGACACCGAAAGAAACAGCGCCTGTACATTGGATGCATGAAATCTGGTCCTGTTCTAGCACAAAAGGGAGTGAGATACCATGAACCTGAGTATTGGAAATTTGGTGAACCTGGAAACAAGTATTTCCGTCATGCTACAGGACAGCTATATGCCATTTCAAAAGATTTGGCTACGTATATATCAATAAACCAGCATGTCCTCCACAAGTACGCTAACGAGGATGTCTCTTTGGGAGCTTGGTTTATTGGACTTGATGTGCAGCATATCGACGATAGGAGACTGTGTTGTGGCACCCCACCTGATTGTGAATGGAAGGCCCAGGCAGGCAACATCTGTGTTGCTTCATTTGACTGGAGTTGCAGCGGGATTTGTAGGTCAGCTGACAGAATCAAGGAAGTCCATCGACGGTGCGGGGAAGGTGAGAATGCTTTGTGGAGTGCTTCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

408

Amino Acids

45.86

Weight (kDa)

9.08

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05170 AT1G05170 AT2G32430
fragaria_vesca	FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140
malus_domestica	MD09G1109300.v1.1 MD17G1097500.v1.1
prunus_persica	Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1
pyrus_communis	pycom09g03200 pycom17g09300
rosa_chinensis	RchiOBHm_Chr2g0159221
rosa_laevigata	RLG00000021144
rosa_multiflora	Rmu_sc0004528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090690
rosa_rugosa	Rorug02G0474800 Rorug02G0474900
rosa_samantha	Rh2AG541700 Rh2BG554300 Rh2CG524400 Rh2DG564100
rosa_wichuraiana	Rw2G044800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	645
AccB1I	GGYRCC	3 cut(s)	557, 645, 1064
AccII	CGCG	1 cut(s)	231
AciI	CCGC	4 cut(s)	357, 660, 1137, 1185
AcsI	RAATTY	2 cut(s)	304, 872
AfaI	GTAC	3 cut(s)	647, 800, 983
AfiI	CCNNNNNNNGG	2 cut(s)	371, 628
AgsI	TTSAA	6 cut(s)	33, 48, 261, 641, 653, 933
AjiI	CACGTC	1 cut(s)	564
AjnI	CCWGG	2 cut(s)	883, 1092
AluBI	AGCT	7 cut(s)	155, 206, 323, 587, 919, 1010, 1154
AluI	AGCT	7 cut(s)	155, 206, 323, 587, 919, 1010, 1154
Alw26I	GTCTC	2 cut(s)	1003, 1045
AlwNI	CAGNNNCTG	1 cut(s)	796
AoxI	GGCC	1 cut(s)	1089
ApeKI	GCWGC	6 cut(s)	78, 323, 326, 447, 1033, 1134
ApoI	RAATTY	2 cut(s)	304, 872
AseI	ATTAAT	1 cut(s)	432
Asp700I	GAANNNNTTC	1 cut(s)	463
Asp718I	GGTACC	1 cut(s)	645
AspLEI	GCGC	2 cut(s)	231, 795
AspS9I	GGNCC	4 cut(s)	57, 631, 821, 1090
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	3 cut(s)	94, 890, 1205
AvaII	GGWCC	3 cut(s)	57, 631, 821
AxyI	CCTNAGG	1 cut(s)	623
BanI	GGYRCC	3 cut(s)	557, 645, 1064
BbvI	GCAGC	6 cut(s)	65, 310, 338, 459, 1045, 1146
BccI	CCATC	3 cut(s)	34, 307, 1182
BceAI	ACGGC	1 cut(s)	435
BciT130I	CCWGG	2 cut(s)	885, 1094
BcnI	CCSGG	1 cut(s)	400
BcoDI	GTCTC	2 cut(s)	1003, 1045
BfaI	CTAG	5 cut(s)	512, 578, 758, 770, 830
BfmI	CTRYAG	3 cut(s)	324, 588, 909
BfoI	RGCGCY	1 cut(s)	796
BglII	AGATCT	1 cut(s)	616
BisI	GCNGC	7 cut(s)	79, 324, 327, 358, 448, 1034, 1135
BlsI	GCNGC	7 cut(s)	80, 325, 328, 359, 449, 1035, 1136
Bme1390I	CCNGG	3 cut(s)	400, 885, 1094
Bme18I	GGWCC	3 cut(s)	57, 631, 821
BmgBI	CACGTC	1 cut(s)	564
BmgT120I	GGNCC	4 cut(s)	57, 631, 821, 1090
BmiI	GGNNCC	4 cut(s)	59, 559, 647, 1066
BmrFI	CCNGG	3 cut(s)	400, 885, 1094
BmsI	GCATC	4 cut(s)	220, 474, 694, 797
BplI	GAGNNNNNCTC	2 cut(s)	983, 1015
BpmI	CTGGAG	2 cut(s)	588, 1147
BpuMI	CCSGG	1 cut(s)	400
BsaAI	YACGTR	4 cut(s)	353, 699, 742, 948
BsaJI	CCNNGG	1 cut(s)	1092
BsaXI	ACNNNNNCTCC	2 cut(s)	1042, 1072
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 628
Bse1I	ACTGG	1 cut(s)	1130
Bse21I	CCTNAGG	1 cut(s)	623
BseBI	CCWGG	2 cut(s)	885, 1094
BseDI	CCNNGG	1 cut(s)	1092
BseGI	GGATG	6 cut(s)	117, 395, 489, 709, 812, 1000
BseLI	CCNNNNNNNGG	2 cut(s)	371, 628
BseMII	CTCAG	2 cut(s)	614, 852
BseNI	ACTGG	1 cut(s)	1130
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	6 cut(s)	65, 310, 338, 459, 1045, 1146
BsgI	GTGCAG	1 cut(s)	1052
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	1091
BshNI	GGYRCC	3 cut(s)	557, 645, 1064
BsiSI	CCGG	1 cut(s)	399
BslI	CCNNNNNNNGG	2 cut(s)	371, 628
BsmAI	GTCTC	2 cut(s)	1003, 1045
BsmI	GAATGC	2 cut(s)	99, 1204
BsnI	GGCC	1 cut(s)	1091
Bsp1407I	TGTACA	1 cut(s)	798
Bsp143I	GATC	1 cut(s)	616
BspACI	CCGC	4 cut(s)	357, 660, 1137, 1185
BspANI	GGCC	1 cut(s)	1091
BspCNI	CTCAG	2 cut(s)	615, 853
BspFNI	CGCG	1 cut(s)	231
BspLI	GGNNCC	4 cut(s)	59, 559, 647, 1066
BspMAI	CTGCAG	1 cut(s)	328
BspQI	GCTCTTC	1 cut(s)	104
BspT107I	GGYRCC	3 cut(s)	557, 645, 1064
BsrGI	TGTACA	1 cut(s)	798
BsrI	ACTGG	1 cut(s)	1130
BssECI	CCNNGG	1 cut(s)	1092
BssMI	GATC	1 cut(s)	616
Bst2UI	CCWGG	2 cut(s)	885, 1094
Bst4CI	ACNGT	3 cut(s)	121, 1056, 1182
Bst6I	CTCTTC	4 cut(s)	104, 398, 454, 513
BstAUI	TGTACA	1 cut(s)	798
BstBAI	YACGTR	4 cut(s)	353, 699, 742, 948
BstC8I	GCNNGC	1 cut(s)	1099
BstDEI	CTNAG	2 cut(s)	623, 861
BstENI	CCTNNNNNAGG	1 cut(s)	369
BstF5I	GGATG	6 cut(s)	117, 395, 489, 709, 812, 1000
BstFNI	CGCG	1 cut(s)	231
BstH2I	RGCGCY	1 cut(s)	796
BstHHI	GCGC	2 cut(s)	231, 795
BstKTI	GATC	1 cut(s)	619
BstMAI	GTCTC	2 cut(s)	1003, 1045
BstMBI	GATC	1 cut(s)	616
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 593
BstNI	CCWGG	2 cut(s)	885, 1094
BstNSI	RCATGY	1 cut(s)	971
BstSCI	CCNGG	3 cut(s)	398, 883, 1092
BstSFI	CTRYAG	3 cut(s)	324, 588, 909
BstSNI	TACGTA	2 cut(s)	353, 948
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	6 cut(s)	65, 310, 338, 459, 1045, 1146
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
Bsu36I	CCTNAGG	1 cut(s)	623
BsuRI	GGCC	1 cut(s)	1091
BtrI	CACGTC	1 cut(s)	564
BtsCI	GGATG	6 cut(s)	117, 395, 489, 709, 812, 1000
BtsIMutI	CAGTG	1 cut(s)	387
Cac8I	GCNNGC	1 cut(s)	1099
CaiI	CAGNNNCTG	1 cut(s)	796
CfoI	GCGC	2 cut(s)	231, 795
Cfr13I	GGNCC	4 cut(s)	57, 631, 821, 1090
CseI	GACGC	1 cut(s)	763
Csp6I	GTAC	3 cut(s)	646, 799, 982
CviAII	CATG	8 cut(s)	480, 554, 611, 635, 811, 854, 905, 968
CviQI	GTAC	3 cut(s)	646, 799, 982
DdeI	CTNAG	2 cut(s)	623, 861
DpnI	GATC	1 cut(s)	618
DpnII	GATC	1 cut(s)	616
Eam1104I	CTCTTC	4 cut(s)	104, 398, 454, 513
EarI	CTCTTC	4 cut(s)	104, 398, 454, 513
EciI	GGCGGA	1 cut(s)	649
Eco105I	TACGTA	2 cut(s)	353, 948
Eco47I	GGWCC	3 cut(s)	57, 631, 821
Eco81I	CCTNAGG	1 cut(s)	623
EcoNI	CCTNNNNNAGG	1 cut(s)	369
EcoRII	CCWGG	2 cut(s)	883, 1092
EcoT22I	ATGCAT	1 cut(s)	812
FaeI	CATG	8 cut(s)	483, 557, 614, 638, 814, 857, 908, 971
FalI	AAGNNNNNCTT	2 cut(s)	633, 665
FatI	CATG	8 cut(s)	479, 553, 610, 634, 810, 853, 904, 967
FauI	CCCGC	2 cut(s)	1130, 1178
Fnu4HI	GCNGC	7 cut(s)	79, 324, 327, 358, 448, 1034, 1135
FokI	GGATG	6 cut(s)	124, 382, 496, 716, 819, 1007
Fsp4HI	GCNGC	7 cut(s)	79, 324, 327, 358, 448, 1034, 1135
FspBI	CTAG	5 cut(s)	512, 578, 758, 770, 830
GlaI	GCGC	2 cut(s)	230, 794
GluI	GCNGC	7 cut(s)	79, 324, 327, 358, 448, 1034, 1135
GsuI	CTGGAG	2 cut(s)	588, 1147
HaeII	RGCGCY	1 cut(s)	796
HaeIII	GGCC	1 cut(s)	1091
HapII	CCGG	1 cut(s)	399
HgaI	GACGC	1 cut(s)	763
HhaI	GCGC	2 cut(s)	231, 795
Hin1II	CATG	8 cut(s)	483, 557, 614, 638, 814, 857, 908, 971
Hin6I	GCGC	2 cut(s)	229, 793
HinP1I	GCGC	2 cut(s)	229, 793
HindIII	AAGCTT	1 cut(s)	204
HinfI	GANTC	6 cut(s)	265, 344, 377, 392, 464, 1161
HpaII	CCGG	1 cut(s)	399
HphI	GGTGA	3 cut(s)	94, 890, 1205
Hpy166II	GTNNAC	3 cut(s)	117, 739, 881
Hpy188I	TCNGA	3 cut(s)	187, 216, 776
Hpy188III	TCNNGA	6 cut(s)	33, 125, 372, 567, 578, 622
Hpy8I	GTNNAC	3 cut(s)	117, 739, 881
Hpy99I	CGWCG	3 cut(s)	757, 1046, 1182
HpyAV	CCTTC	7 cut(s)	211, 402, 501, 517, 635, 1081, 1184
HpyCH4III	ACNGT	3 cut(s)	121, 1056, 1182
HpyCH4IV	ACGT	5 cut(s)	352, 563, 698, 741, 947
HpyCH4V	TGCA	7 cut(s)	195, 211, 326, 707, 810, 1033, 1134
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 593
HpyF3I	CTNAG	2 cut(s)	623, 861
HpySE526I	ACGT	5 cut(s)	352, 563, 698, 741, 947
Hsp92II	CATG	8 cut(s)	483, 557, 614, 638, 814, 857, 908, 971
HspAI	GCGC	2 cut(s)	229, 793
KpnI	GGTACC	1 cut(s)	649
Kzo9I	GATC	1 cut(s)	616
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	1007
Lsp1109I	GCAGC	6 cut(s)	65, 310, 338, 459, 1045, 1146
LweI	GCATC	4 cut(s)	220, 474, 694, 797
MaeI	CTAG	5 cut(s)	512, 578, 758, 770, 830
MaeII	ACGT	5 cut(s)	352, 563, 698, 741, 947
MalI	GATC	1 cut(s)	618
MboI	GATC	1 cut(s)	616
MboII	GAAGA	8 cut(s)	21, 91, 173, 176, 415, 471, 516, 530
MflI	RGATCY	1 cut(s)	616
MluCI	AATT	7 cut(s)	170, 176, 304, 317, 429, 653, 872
MlyI	GAGTC	2 cut(s)	259, 353
MmeI	TCCRAC	1 cut(s)	406
Mph1103I	ATGCAT	1 cut(s)	812
MroXI	GAANNNNTTC	1 cut(s)	463
MseI	TTAA	3 cut(s)	173, 416, 432
MspA1I	CMGCKG	2 cut(s)	1137, 1154
MspI	CCGG	1 cut(s)	399
MspR9I	CCNGG	3 cut(s)	400, 885, 1094
Mva1269I	GAATGC	2 cut(s)	99, 1204
MvaI	CCWGG	2 cut(s)	885, 1094
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	332, 593
NciI	CCSGG	1 cut(s)	400
NdeII	GATC	1 cut(s)	616
NlaIII	CATG	8 cut(s)	483, 557, 614, 638, 814, 857, 908, 971
NlaIV	GGNNCC	4 cut(s)	59, 559, 647, 1066
NsiI	ATGCAT	1 cut(s)	812
NspI	RCATGY	1 cut(s)	971
PciSI	GCTCTTC	1 cut(s)	104
PctI	GAATGC	2 cut(s)	99, 1204
PdmI	GAANNNNTTC	1 cut(s)	463
PfeI	GAWTC	4 cut(s)	377, 392, 464, 1161
PfoI	TCCNGGA	1 cut(s)	398
PkrI	GCNGC	7 cut(s)	80, 325, 328, 359, 449, 1035, 1136
PleI	GAGTC	2 cut(s)	259, 352
PpsI	GAGTC	2 cut(s)	259, 352
Ppu21I	YACGTR	4 cut(s)	353, 699, 742, 948
PshBI	ATTAAT	1 cut(s)	432
Psp6I	CCWGG	2 cut(s)	883, 1092
PspGI	CCWGG	2 cut(s)	883, 1092
PspN4I	GGNNCC	4 cut(s)	59, 559, 647, 1066
PspPI	GGNCC	4 cut(s)	57, 631, 821, 1090
PstI	CTGCAG	1 cut(s)	328
PstNI	CAGNNNCTG	1 cut(s)	796
PsuI	RGATCY	1 cut(s)	616
PvuII	CAGCTG	1 cut(s)	1154
RsaI	GTAC	3 cut(s)	647, 800, 983
RsaNI	GTAC	3 cut(s)	646, 799, 982
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	3 cut(s)	173, 416, 432
SatI	GCNGC	7 cut(s)	79, 324, 327, 358, 448, 1034, 1135
Sau3AI	GATC	1 cut(s)	616
Sau96I	GGNCC	4 cut(s)	57, 631, 821, 1090
SchI	GAGTC	2 cut(s)	259, 353
ScrFI	CCNGG	3 cut(s)	400, 885, 1094
SfaNI	GCATC	4 cut(s)	220, 474, 694, 797
SfcI	CTRYAG	3 cut(s)	324, 588, 909
SinI	GGWCC	3 cut(s)	57, 631, 821
SnaBI	TACGTA	2 cut(s)	353, 948
Sse9I	AATT	7 cut(s)	170, 176, 304, 317, 429, 653, 872
SsiI	CCGC	4 cut(s)	357, 660, 1137, 1185
SspMI	CTAG	5 cut(s)	512, 578, 758, 770, 830
StyD4I	CCNGG	3 cut(s)	398, 883, 1092
TaaI	ACNGT	3 cut(s)	121, 1056, 1182
TaiI	ACGT	5 cut(s)	355, 566, 701, 744, 950
TaqI	TCGA	2 cut(s)	1041, 1177
TasI	AATT	7 cut(s)	170, 176, 304, 317, 429, 653, 872
TatI	WGTACW	1 cut(s)	798
TauI	GCSGC	1 cut(s)	360
TfiI	GAWTC	4 cut(s)	377, 392, 464, 1161
Tru1I	TTAA	3 cut(s)	173, 416, 432
Tru9I	TTAA	3 cut(s)	173, 416, 432
TscAI	CASTG	1 cut(s)	394
TseI	GCWGC	6 cut(s)	78, 323, 326, 447, 1033, 1134
TspDTI	ATGAA	4 cut(s)	384, 827, 870, 1107
TspGWI	ACGGA	2 cut(s)	160, 890
TspRI	CASTG	1 cut(s)	394
VpaK11BI	GGWCC	3 cut(s)	57, 631, 821
VspI	ATTAAT	1 cut(s)	432
XagI	CCTNNNNNAGG	1 cut(s)	369
XapI	RAATTY	2 cut(s)	304, 872
XbaI	TCTAGA	1 cut(s)	577
XceI	RCATGY	1 cut(s)	971
XmnI	GAANNNNTTC	1 cut(s)	463
XspI	CTAG	5 cut(s)	512, 578, 758, 770, 830
Zsp2I	ATGCAT	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.