Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005984

Physical Location & Seq

Genomic Coordinates Reverse (-)

75323775 .. 75328217

Gene Structure 4443 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52782

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGTCTTGGAAAAGCAGAGGAGACCCTTCTTCTTCTAGAAGTGTAATTTCACAGAAATGGACCCTTTTGCTTTGTTTAAGCTGCTTCTGTGCTGGAATGCTCTTCACCAATAGGATGTGGAGTGTTCCGGAAAGTAGAGGTCTAACACGGAGAACAGCTTTGGAAGAAGCGAAGTTAAACTTAGTATCAGAGGGTTGCAATCCAAAAGCTTTGCATCAGAAGGAAGTAGAGCGAGAAACTAAGGACATTTTTGGAGAGGTTTATAAGACTCATAATGCTATACAGACACTAGATAAGACTATTTCAAATTTAGAGATGGAATTAGCTGCTGCAAGGGCAACACAAGAGTCTATACGTAGTGGCTCTCCTTCATCAGGTGACTCGAAGACTGACTCATCTGGGAAGAGAAGGTATTTAATGGTTGTTGGAATCAATACTGCTTTTAGCAGCCGGAAAAGAAGAGATTCAGTTCGTGCTACTTGGATGCCTCAAGGTGAGAAAAGGAAGAGACTGGAGGAAGAGAAGGGTATCATCATCCGTTTTGTCATTGGTCACAGTGCCACATCAGGAGGCATTCTAGACAGAGCAGTTGAAGCCGAGGACAGAAAGCACGGAGATCTCCTGAGGCTGGACCACGTTGAAGGATATCTGGAATTGTCTGCCAAGACAAAAATATATTTTGCTACTGCTGTTGCTATGTGGGATGCAGATTTTTATGTCAAAGTCGACGATGATGTCCACGTAAATATTGCGACACTAGGAGAAACATTAGTTAGACACCGAAAGAAATCACGTCTGTACATTGGATGCATGAAATCTGGTCCTGTTCTGGCACAAAAGGGAGTGAGATACCATGAACCTGAATATTGGAAATTTGGTGAACCTGGAAACAAGTATTTCCGTCATGCTACAGGACAATTATACGCAATCTCAAGAGATTTGGCTACATATATATCAATAAACCAGCATGTCCTCCACAAGTATGCGAATGAGGATGTCTCTTTGGGAGCTTGGTTTATTGGACTTGATGTGGAGCATATCGATGATAGGAGACTATGTTGTGGCACCCCACCTGATTGTGAGTGGAAGGCCCAGGCAGGCAACGTCTGCGTTGCTTCATTTGATTGGAGTTGCAGTGGAATTTGTAGGTCAGCTGAGAGGATTAAGGAAGTCCATCGACGCTGCGGGGAAGGCGAAAACGCTTTATGGAGTGCTTCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

407

Amino Acids

45.89

Weight (kDa)

8.81

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	17 - 113	1.1e-37	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	152 - 349	8e-52	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05170 AT1G05170 AT2G32430
fragaria_vesca	FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140
malus_domestica	MD09G1109300.v1.1 MD17G1097500.v1.1
prunus_persica	Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1
pyrus_communis	pycom09g03200 pycom17g09300
rosa_chinensis	RchiOBHm_Chr2g0159221
rosa_laevigata	RLG00000021144
rosa_multiflora	Rmu_sc0004528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090690
rosa_rugosa	Rorug02G0474800 Rorug02G0474900
rosa_samantha	Rh2AG541700 Rh2BG554300 Rh2CG524400 Rh2DG564100
rosa_wichuraiana	Rw2G044800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	264
AasI	GACNNNNNNGTC	1 cut(s)	734
AccB1I	GGYRCC	1 cut(s)	1064
AccI	GTMKAC	1 cut(s)	726
AccIII	TCCGGA	1 cut(s)	127
AciI	CCGC	1 cut(s)	1185
AcsI	RAATTY	3 cut(s)	307, 872, 1140
AfaI	GTAC	1 cut(s)	800
AfiI	CCNNNNNNNGG	2 cut(s)	374, 628
AgsI	TTSAA	3 cut(s)	306, 593, 641
AjiI	CACGTC	1 cut(s)	794
AjnI	CCWGG	2 cut(s)	883, 1092
AluBI	AGCT	6 cut(s)	81, 158, 209, 326, 1010, 1154
AluI	AGCT	6 cut(s)	81, 158, 209, 326, 1010, 1154
Alw26I	GTCTC	4 cut(s)	15, 502, 1003, 1045
Aor13HI	TCCGGA	1 cut(s)	127
AoxI	GGCC	1 cut(s)	1089
ApeKI	GCWGC	5 cut(s)	81, 326, 329, 447, 1182
ApoI	RAATTY	3 cut(s)	307, 872, 1140
Asp700I	GAANNNNTTC	1 cut(s)	463
AspS9I	GGNCC	4 cut(s)	60, 631, 821, 1090
AsuHPI	GGTGA	4 cut(s)	97, 389, 506, 890
AvaII	GGWCC	3 cut(s)	60, 631, 821
AxyI	CCTNAGG	1 cut(s)	623
BanI	GGYRCC	1 cut(s)	1064
BbsI	GAAGAC	1 cut(s)	392
BbvI	GCAGC	5 cut(s)	68, 313, 316, 459, 1169
BccI	CCATC	2 cut(s)	310, 1182
BciT130I	CCWGG	2 cut(s)	885, 1094
BcoDI	GTCTC	4 cut(s)	15, 502, 1003, 1045
BfaI	CTAG	4 cut(s)	36, 290, 578, 758
BfmI	CTRYAG	1 cut(s)	909
BglII	AGATCT	1 cut(s)	616
BisI	GCNGC	5 cut(s)	82, 327, 330, 448, 1183
BlsI	GCNGC	5 cut(s)	83, 328, 331, 449, 1184
Bme1390I	CCNGG	2 cut(s)	885, 1094
Bme18I	GGWCC	3 cut(s)	60, 631, 821
BmgBI	CACGTC	1 cut(s)	794
BmgT120I	GGNCC	4 cut(s)	60, 631, 821, 1090
BmiI	GGNNCC	2 cut(s)	62, 1066
BmrFI	CCNGG	2 cut(s)	885, 1094
BmsI	GCATC	4 cut(s)	223, 474, 694, 797
BpiI	GAAGAC	1 cut(s)	392
BplI	GAGNNNNNCTC	2 cut(s)	983, 1015
BpmI	CTGGAG	1 cut(s)	533
BpuEI	CTTGAG	2 cut(s)	474, 916
Bsa29I	ATCGAT	1 cut(s)	1041
BsaAI	YACGTR	2 cut(s)	356, 742
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	597, 1092
BsaWI	WCCGGW	1 cut(s)	127
BsaXI	ACNNNNNCTCC	4 cut(s)	1042, 1072, 1120, 1150
Bsc4I	CCNNNNNNNGG	2 cut(s)	374, 628
Bse1I	ACTGG	1 cut(s)	516
Bse21I	CCTNAGG	1 cut(s)	623
BseAI	TCCGGA	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	885, 1094
BseCI	ATCGAT	1 cut(s)	1041
BseDI	CCNNGG	2 cut(s)	597, 1092
BseGI	GGATG	6 cut(s)	120, 489, 534, 709, 812, 1000
BseLI	CCNNNNNNNGG	2 cut(s)	374, 628
BseMII	CTCAG	2 cut(s)	614, 1146
BseNI	ACTGG	1 cut(s)	516
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	5 cut(s)	68, 313, 316, 459, 1169
BshFI	GGCC	1 cut(s)	1091
BshNI	GGYRCC	1 cut(s)	1064
BshVI	ATCGAT	1 cut(s)	1041
BsiSI	CCGG	2 cut(s)	128, 451
BslI	CCNNNNNNNGG	2 cut(s)	374, 628
BsmAI	GTCTC	4 cut(s)	15, 502, 1003, 1045
BsmI	GAATGC	2 cut(s)	102, 573
BsnI	GGCC	1 cut(s)	1091
Bso31I	GGTCTC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	127
Bsp1407I	TGTACA	1 cut(s)	798
Bsp143I	GATC	1 cut(s)	616
BspACI	CCGC	1 cut(s)	1185
BspANI	GGCC	1 cut(s)	1091
BspCNI	CTCAG	2 cut(s)	615, 1147
BspDI	ATCGAT	1 cut(s)	1041
BspEI	TCCGGA	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	62, 1066
BspQI	GCTCTTC	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	1064
BspTNI	GGTCTC	1 cut(s)	15
BsrGI	TGTACA	1 cut(s)	798
BsrI	ACTGG	1 cut(s)	516
BssECI	CCNNGG	2 cut(s)	597, 1092
BssMI	GATC	1 cut(s)	616
Bst2UI	CCWGG	2 cut(s)	885, 1094
Bst4CI	ACNGT	1 cut(s)	557
Bst6I	CTCTTC	5 cut(s)	107, 398, 454, 500, 513
BstAPI	GCANNNNNTGC	1 cut(s)	1107
BstAUI	TGTACA	1 cut(s)	798
BstBAI	YACGTR	2 cut(s)	356, 742
BstC8I	GCNNGC	1 cut(s)	1099
BstDEI	CTNAG	4 cut(s)	181, 240, 623, 1155
BstENI	CCTNNNNNAGG	1 cut(s)	372
BstF5I	GGATG	6 cut(s)	120, 489, 534, 709, 812, 1000
BstKTI	GATC	1 cut(s)	619
BstMAI	GTCTC	4 cut(s)	15, 502, 1003, 1045
BstMBI	GATC	1 cut(s)	616
BstMWI	GCNNNNNNNGC	4 cut(s)	335, 593, 1107, 1191
BstNI	CCWGG	2 cut(s)	885, 1094
BstNSI	RCATGY	1 cut(s)	971
BstSCI	CCNGG	2 cut(s)	883, 1092
BstSFI	CTRYAG	1 cut(s)	909
BstSNI	TACGTA	1 cut(s)	356
BstV1I	GCAGC	5 cut(s)	68, 313, 316, 459, 1169
BstV2I	GAAGAC	1 cut(s)	392
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
Bsu15I	ATCGAT	1 cut(s)	1041
Bsu36I	CCTNAGG	1 cut(s)	623
BsuRI	GGCC	1 cut(s)	1091
BsuTUI	ATCGAT	1 cut(s)	1041
BtrI	CACGTC	1 cut(s)	794
BtsCI	GGATG	6 cut(s)	120, 489, 534, 709, 812, 1000
BtsI	GCAGTG	1 cut(s)	1141
BtsIMutI	CAGTG	2 cut(s)	562, 1141
Cac8I	GCNNGC	1 cut(s)	1099
Cfr13I	GGNCC	4 cut(s)	60, 631, 821, 1090
ClaI	ATCGAT	1 cut(s)	1041
CseI	GACGC	1 cut(s)	1188
Csp6I	GTAC	1 cut(s)	799
CviAII	CATG	4 cut(s)	811, 854, 905, 968
CviQI	GTAC	1 cut(s)	799
DdeI	CTNAG	4 cut(s)	181, 240, 623, 1155
DpnI	GATC	1 cut(s)	618
DpnII	GATC	1 cut(s)	616
DrdI	GACNNNNNNGTC	1 cut(s)	734
DseDI	GACNNNNNNGTC	1 cut(s)	734
Eam1104I	CTCTTC	5 cut(s)	107, 398, 454, 500, 513
EarI	CTCTTC	5 cut(s)	107, 398, 454, 500, 513
Eco105I	TACGTA	1 cut(s)	356
Eco31I	GGTCTC	1 cut(s)	15
Eco32I	GATATC	1 cut(s)	647
Eco47I	GGWCC	3 cut(s)	60, 631, 821
Eco81I	CCTNAGG	1 cut(s)	623
EcoNI	CCTNNNNNAGG	1 cut(s)	372
EcoRII	CCWGG	2 cut(s)	883, 1092
EcoRV	GATATC	1 cut(s)	647
EcoT22I	ATGCAT	1 cut(s)	812
FaeI	CATG	4 cut(s)	814, 857, 908, 971
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FatI	CATG	4 cut(s)	810, 853, 904, 967
FauI	CCCGC	1 cut(s)	1178
FblI	GTMKAC	1 cut(s)	726
Fnu4HI	GCNGC	5 cut(s)	82, 327, 330, 448, 1183
FokI	GGATG	6 cut(s)	127, 496, 521, 716, 819, 1007
Fsp4HI	GCNGC	5 cut(s)	82, 327, 330, 448, 1183
FspBI	CTAG	4 cut(s)	36, 290, 578, 758
GluI	GCNGC	5 cut(s)	82, 327, 330, 448, 1183
GsuI	CTGGAG	1 cut(s)	533
HaeIII	GGCC	1 cut(s)	1091
HapII	CCGG	2 cut(s)	128, 451
HgaI	GACGC	1 cut(s)	1188
Hin1II	CATG	4 cut(s)	814, 857, 908, 971
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	6 cut(s)	268, 347, 380, 392, 429, 464
HpaII	CCGG	2 cut(s)	128, 451
HphI	GGTGA	4 cut(s)	97, 389, 506, 890
Hpy166II	GTNNAC	3 cut(s)	727, 739, 881
Hpy188I	TCNGA	2 cut(s)	190, 219
Hpy188III	TCNNGA	7 cut(s)	36, 128, 567, 578, 622, 650, 933
Hpy8I	GTNNAC	3 cut(s)	727, 739, 881
Hpy99I	CGWCG	2 cut(s)	731, 1182
HpyAV	CCTTC	8 cut(s)	36, 214, 378, 402, 517, 635, 1081, 1184
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4IV	ACGT	5 cut(s)	355, 636, 741, 793, 1104
HpyCH4V	TGCA	6 cut(s)	198, 214, 332, 707, 810, 1134
HpyF10VI	GCNNNNNNNGC	4 cut(s)	335, 593, 1107, 1191
HpyF3I	CTNAG	4 cut(s)	181, 240, 623, 1155
HpySE526I	ACGT	5 cut(s)	355, 636, 741, 793, 1104
Hsp92II	CATG	4 cut(s)	814, 857, 908, 971
Kpn2I	TCCGGA	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	616
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	2 cut(s)	1007, 1033
Lsp1109I	GCAGC	5 cut(s)	68, 313, 316, 459, 1169
LweI	GCATC	4 cut(s)	223, 474, 694, 797
MaeI	CTAG	4 cut(s)	36, 290, 578, 758
MaeII	ACGT	5 cut(s)	355, 636, 741, 793, 1104
MaeIII	GTNAC	2 cut(s)	377, 551
MalI	GATC	1 cut(s)	618
MboI	GATC	1 cut(s)	616
MboII	GAAGA	9 cut(s)	21, 24, 94, 176, 397, 415, 471, 517, 530
MflI	RGATCY	1 cut(s)	616
MluCI	AATT	7 cut(s)	45, 307, 320, 653, 872, 917, 1140
MlyI	GAGTC	4 cut(s)	262, 356, 374, 386
MmeI	TCCRAC	1 cut(s)	406
Mph1103I	ATGCAT	1 cut(s)	812
MroI	TCCGGA	1 cut(s)	127
MroXI	GAANNNNTTC	1 cut(s)	463
MseI	TTAA	4 cut(s)	77, 176, 416, 1164
MslI	CAYNNNNRTG	3 cut(s)	55, 981, 1041
MspA1I	CMGCKG	1 cut(s)	1154
MspI	CCGG	2 cut(s)	128, 451
MspR9I	CCNGG	2 cut(s)	885, 1094
Mva1269I	GAATGC	2 cut(s)	102, 573
MvaI	CCWGG	2 cut(s)	885, 1094
MwoI	GCNNNNNNNGC	4 cut(s)	335, 593, 1107, 1191
NdeII	GATC	1 cut(s)	616
NlaIII	CATG	4 cut(s)	814, 857, 908, 971
NlaIV	GGNNCC	2 cut(s)	62, 1066
NmeAIII	GCCGAG	1 cut(s)	622
NmuCI	GTSAC	2 cut(s)	377, 551
NsiI	ATGCAT	1 cut(s)	812
NspI	RCATGY	1 cut(s)	971
PciSI	GCTCTTC	1 cut(s)	107
PctI	GAATGC	2 cut(s)	102, 573
PdmI	GAANNNNTTC	1 cut(s)	463
PfeI	GAWTC	2 cut(s)	429, 464
PkrI	GCNGC	5 cut(s)	83, 328, 331, 449, 1184
PleI	GAGTC	4 cut(s)	262, 355, 374, 386
PpsI	GAGTC	4 cut(s)	262, 355, 374, 386
Ppu21I	YACGTR	2 cut(s)	356, 742
PsiI	TTATAA	1 cut(s)	264
Psp6I	CCWGG	2 cut(s)	883, 1092
PspGI	CCWGG	2 cut(s)	883, 1092
PspN4I	GGNNCC	2 cut(s)	62, 1066
PspPI	GGNCC	4 cut(s)	60, 631, 821, 1090
PsuI	RGATCY	1 cut(s)	616
PvuII	CAGCTG	1 cut(s)	1154
RsaI	GTAC	1 cut(s)	800
RsaNI	GTAC	1 cut(s)	799
RseI	CAYNNNNRTG	3 cut(s)	55, 981, 1041
SalI	GTCGAC	1 cut(s)	725
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	4 cut(s)	77, 176, 416, 1164
SatI	GCNGC	5 cut(s)	82, 327, 330, 448, 1183
Sau3AI	GATC	1 cut(s)	616
Sau96I	GGNCC	4 cut(s)	60, 631, 821, 1090
SchI	GAGTC	4 cut(s)	262, 356, 374, 386
ScrFI	CCNGG	2 cut(s)	885, 1094
SfaNI	GCATC	4 cut(s)	223, 474, 694, 797
SfcI	CTRYAG	1 cut(s)	909
SinI	GGWCC	3 cut(s)	60, 631, 821
SmiMI	CAYNNNNRTG	3 cut(s)	55, 981, 1041
SmlI	CTYRAG	2 cut(s)	489, 931
SmoI	CTYRAG	2 cut(s)	489, 931
SnaBI	TACGTA	1 cut(s)	356
Sse9I	AATT	7 cut(s)	45, 307, 320, 653, 872, 917, 1140
SsiI	CCGC	1 cut(s)	1185
SspI	AATATT	2 cut(s)	748, 866
SspMI	CTAG	4 cut(s)	36, 290, 578, 758
StyD4I	CCNGG	2 cut(s)	883, 1092
TaaI	ACNGT	1 cut(s)	557
TaiI	ACGT	5 cut(s)	358, 639, 744, 796, 1107
TaqI	TCGA	4 cut(s)	383, 726, 1041, 1177
TasI	AATT	7 cut(s)	45, 307, 320, 653, 872, 917, 1140
TatI	WGTACW	1 cut(s)	798
TfiI	GAWTC	2 cut(s)	429, 464
Tru1I	TTAA	4 cut(s)	77, 176, 416, 1164
Tru9I	TTAA	4 cut(s)	77, 176, 416, 1164
TscAI	CASTG	2 cut(s)	562, 1141
TseFI	GTSAC	2 cut(s)	377, 551
TseI	GCWGC	5 cut(s)	81, 326, 329, 447, 1182
Tsp45I	GTSAC	2 cut(s)	377, 551
TspDTI	ATGAA	4 cut(s)	360, 827, 870, 1107
TspGWI	ACGGA	4 cut(s)	163, 527, 627, 890
TspRI	CASTG	2 cut(s)	562, 1141
VpaK11BI	GGWCC	3 cut(s)	60, 631, 821
XagI	CCTNNNNNAGG	1 cut(s)	372
XapI	RAATTY	3 cut(s)	307, 872, 1140
XbaI	TCTAGA	2 cut(s)	35, 577
XceI	RCATGY	1 cut(s)	971
XmiI	GTMKAC	1 cut(s)	726
XmnI	GAANNNNTTC	1 cut(s)	463
XspI	CTAG	4 cut(s)	36, 290, 578, 758
Zsp2I	ATGCAT	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.