Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0005984

Physical Location & Seq

Genomic Coordinates Forward (+)

8088872 .. 8093166

Gene Structure 4295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1109300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGTCTTGGAAAAGCAGAGGAGGCCCATCATCATCTAGAAGTTTTATTTCTCAGAAATGGACCTTTTTTCTCTGTTTAAGCTGCTTCTGTGCCGGAATGCTCTTCACCAATAGAATGTGGACTGTACCAGAAAGTAAAGGTATCACACGAAGAACAGCTATGGAAGAAGAAAAATTAAATTTAGTTTCAGAGGGTTGCAATCCGAAATCTAAGGAGGTGAAGCGCGAAGATAAAGACATTTTTGGGGAGGTTTATAAGACTCATAATGCTATACAGACATTAGATAAGACTATTTCAAATTTAGAGATGGAGTTAGCTGCAGCAAGGGCAACACAGGAGTCGATACGTAGTGGCTCTCCTTTATCAGGTGACTCGAAGACTGATTCAACTGGGAAGAGAAGGTATCTGATGGTTGTTGGAATTAATACTGCTTTTAGCAGCCGGAAAAGAAGAGATTCAGTTCGTGCTACGTGGATGCCACAAGGCGAGAAACGAAAGAGGCTGGAGGAAGAGAAGGGCATCATCATTCGCTTTGTCATTGGTCATAGTGCCGCGTCAGGAGGTATTCTAGATAGAGCTGTTGAAGCAGAGGACAGAAAGCATGGAGATATCCTGAGGCTGGACCATGTTGAAGGGTACCTCGAATTGTCAGCCAAGACAAAGATTTATTTTGCTACTGCTGTTGCTACGTGGGATGCAGATTTTTATGTCAAAGTTGACGATGATGTCCACGTAAATATTGCGACGCTAGGAGAAACACTAGTCAGACACCGAAAGAAAAAGCGCCTGTACATTGGATGCATGAAATCTGGTCCTGTTCTAGCACAAAAGGGAGTGAGATACCATGAACCTGAGTATTGGAAATTTGGTGAGCCAGGAAACAAGTACTTCCGTCATGCTACAGGACAGCTGTATGCGATATCAAAAGATTTGGCTACGTATGTATCAATAAACCAGCATGTCCTACACAAGTACGCTAATGAGGATGTCTCATTGGGATCTTGGTTTATTGGACTCGATGTACAGCATATTGATGATCGGAGACTATGTTGCGGCACCCCACCCGATTGTGAGTGGAAGGCGCAGGCGGGCAACATCTGTGTTGCTTCATTTGATTGGAGCTGCAGTGGGATTTGTAAGTCAGCCGAGAGAATCAAGGAAGTCCACCGCCGGTGCGGGGAAGGCGAAAACGCCTTGTGGAGTGCTAGATTCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

406

Amino Acids

45.84

Weight (kDa)

9.0

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	17 - 110	1.7e-39	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	149 - 346	1.4e-51	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05170 AT1G05170 AT2G32430
fragaria_vesca	FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140
malus_domestica	MD09G1109300.v1.1 MD17G1097500.v1.1
prunus_persica	Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1
pyrus_communis	pycom09g03200 pycom17g09300
rosa_chinensis	RchiOBHm_Chr2g0159221
rosa_laevigata	RLG00000021144
rosa_multiflora	Rmu_sc0004528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090690
rosa_rugosa	Rorug02G0474800 Rorug02G0474900
rosa_samantha	Rh2AG541700 Rh2BG554300 Rh2CG524400 Rh2DG564100
rosa_wichuraiana	Rw2G044800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	255
AasI	GACNNNNNNGTC	1 cut(s)	725
Acc65I	GGTACC	1 cut(s)	636
AccB1I	GGYRCC	2 cut(s)	636, 1055
AccII	CGCG	2 cut(s)	225, 554
AciI	CCGC	5 cut(s)	552, 1053, 1088, 1168, 1176
AclWI	GGATC	1 cut(s)	1006
AcsI	RAATTY	3 cut(s)	178, 298, 863
AfaI	GTAC	6 cut(s)	126, 638, 791, 887, 974, 1023
AfiI	CCNNNNNNNGG	3 cut(s)	365, 619, 1177
AgsI	TTSAA	4 cut(s)	297, 387, 584, 632
AhlI	ACTAGT	1 cut(s)	760
AjnI	CCWGG	1 cut(s)	874
AluBI	AGCT	6 cut(s)	81, 158, 317, 578, 910, 1122
AluI	AGCT	6 cut(s)	81, 158, 317, 578, 910, 1122
Alw26I	GTCTC	2 cut(s)	994, 1036
AlwI	GGATC	1 cut(s)	1006
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	5 cut(s)	81, 317, 320, 438, 1122
ApoI	RAATTY	3 cut(s)	178, 298, 863
AseI	ATTAAT	1 cut(s)	423
Asp700I	GAANNNNTTC	1 cut(s)	454
Asp718I	GGTACC	1 cut(s)	636
AspLEI	GCGC	3 cut(s)	225, 786, 1084
AspS9I	GGNCC	4 cut(s)	23, 60, 622, 812
AsuHPI	GGTGA	4 cut(s)	97, 229, 380, 881
AsuII	TTCGAA	1 cut(s)	1212
AvaII	GGWCC	3 cut(s)	60, 622, 812
AxyI	CCTNAGG	1 cut(s)	614
BaeI	ACNNNNGTAYC	2 cut(s)	927, 960
BanI	GGYRCC	2 cut(s)	636, 1055
BbsI	GAAGAC	1 cut(s)	383
BbvI	GCAGC	5 cut(s)	68, 304, 332, 450, 1109
BccI	CCATC	3 cut(s)	34, 301, 403
BciT130I	CCWGG	1 cut(s)	876
BcoDI	GTCTC	2 cut(s)	994, 1036
BcuI	ACTAGT	1 cut(s)	760
BfaI	CTAG	6 cut(s)	36, 569, 749, 761, 821, 1206
BfmI	CTRYAG	3 cut(s)	318, 900, 1123
BfoI	RGCGCY	1 cut(s)	787
BisI	GCNGC	7 cut(s)	82, 318, 321, 439, 552, 1054, 1123
BlsI	GCNGC	7 cut(s)	83, 319, 322, 440, 553, 1055, 1124
BmcAI	AGTACT	1 cut(s)	887
Bme1390I	CCNGG	1 cut(s)	876
Bme18I	GGWCC	3 cut(s)	60, 622, 812
BmgT120I	GGNCC	4 cut(s)	23, 60, 622, 812
BmiI	GGNNCC	2 cut(s)	638, 1057
BmrFI	CCNGG	1 cut(s)	876
BmrI	ACTGGG	1 cut(s)	399
BmsI	GCATC	4 cut(s)	465, 528, 685, 788
BmuI	ACTGGG	1 cut(s)	399
BpiI	GAAGAC	1 cut(s)	383
BplI	GAGNNNNNCTC	2 cut(s)	974, 1006
BpmI	CTGGAG	1 cut(s)	524
Bpu14I	TTCGAA	1 cut(s)	1212
BsaAI	YACGTR	5 cut(s)	347, 471, 690, 733, 939
BsaXI	ACNNNNNCTCC	4 cut(s)	1033, 1063, 1111, 1141
Bsc4I	CCNNNNNNNGG	3 cut(s)	365, 619, 1177
Bse118I	RCCGGY	1 cut(s)	1170
Bse1I	ACTGG	1 cut(s)	394
Bse21I	CCTNAGG	1 cut(s)	614
BseBI	CCWGG	1 cut(s)	876
BseGI	GGATG	4 cut(s)	480, 700, 803, 991
BseLI	CCNNNNNNNGG	3 cut(s)	365, 619, 1177
BseMII	CTCAG	3 cut(s)	65, 605, 843
BseNI	ACTGG	1 cut(s)	394
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	5 cut(s)	68, 304, 332, 450, 1109
Bsh1236I	CGCG	2 cut(s)	225, 554
BshFI	GGCC	1 cut(s)	24
BshNI	GGYRCC	2 cut(s)	636, 1055
BsiSI	CCGG	3 cut(s)	93, 442, 1171
BslI	CCNNNNNNNGG	3 cut(s)	365, 619, 1177
BsmAI	GTCTC	2 cut(s)	994, 1036
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	24
Bsp119I	TTCGAA	1 cut(s)	1212
Bsp1407I	TGTACA	2 cut(s)	789, 1021
Bsp143I	GATC	2 cut(s)	998, 1036
BspACI	CCGC	5 cut(s)	552, 1053, 1088, 1168, 1176
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	3 cut(s)	64, 606, 844
BspFNI	CGCG	2 cut(s)	225, 554
BspLI	GGNNCC	2 cut(s)	638, 1057
BspMAI	CTGCAG	2 cut(s)	322, 1127
BspPI	GGATC	1 cut(s)	1006
BspQI	GCTCTTC	1 cut(s)	107
BspT104I	TTCGAA	1 cut(s)	1212
BspT107I	GGYRCC	2 cut(s)	636, 1055
BsrFI	RCCGGY	1 cut(s)	1170
BsrGI	TGTACA	2 cut(s)	789, 1021
BsrI	ACTGG	1 cut(s)	394
BssAI	RCCGGY	1 cut(s)	1170
BssMI	GATC	2 cut(s)	998, 1036
Bst2UI	CCWGG	1 cut(s)	876
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	4 cut(s)	107, 389, 445, 504
BstAUI	TGTACA	2 cut(s)	789, 1021
BstBAI	YACGTR	5 cut(s)	347, 471, 690, 733, 939
BstBI	TTCGAA	1 cut(s)	1212
BstC8I	GCNNGC	2 cut(s)	1086, 1090
BstDEI	CTNAG	4 cut(s)	51, 210, 614, 852
BstENI	CCTNNNNNAGG	1 cut(s)	363
BstF5I	GGATG	4 cut(s)	480, 700, 803, 991
BstFNI	CGCG	2 cut(s)	225, 554
BstH2I	RGCGCY	1 cut(s)	787
BstHHI	GCGC	3 cut(s)	225, 786, 1084
BstKTI	GATC	2 cut(s)	1001, 1039
BstMAI	GTCTC	2 cut(s)	994, 1036
BstMBI	GATC	2 cut(s)	998, 1036
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 326, 584, 1182
BstNI	CCWGG	1 cut(s)	876
BstNSI	RCATGY	1 cut(s)	962
BstSCI	CCNGG	1 cut(s)	874
BstSFI	CTRYAG	3 cut(s)	318, 900, 1123
BstSNI	TACGTA	2 cut(s)	347, 939
BstUI	CGCG	2 cut(s)	225, 554
BstV1I	GCAGC	5 cut(s)	68, 304, 332, 450, 1109
BstV2I	GAAGAC	1 cut(s)	383
BstX2I	RGATCY	1 cut(s)	998
BstYI	RGATCY	1 cut(s)	998
Bsu36I	CCTNAGG	1 cut(s)	614
BsuRI	GGCC	1 cut(s)	24
BtsCI	GGATG	4 cut(s)	480, 700, 803, 991
BtsI	GCAGTG	1 cut(s)	1132
BtsIMutI	CAGTG	1 cut(s)	1132
Cac8I	GCNNGC	2 cut(s)	1086, 1090
CfoI	GCGC	3 cut(s)	225, 786, 1084
Cfr10I	RCCGGY	1 cut(s)	1170
Cfr13I	GGNCC	4 cut(s)	23, 60, 622, 812
CseI	GACGC	2 cut(s)	543, 754
Csp6I	GTAC	6 cut(s)	125, 637, 790, 886, 973, 1022
CviAII	CATG	6 cut(s)	602, 626, 802, 845, 896, 959
CviQI	GTAC	6 cut(s)	125, 637, 790, 886, 973, 1022
DdeI	CTNAG	4 cut(s)	51, 210, 614, 852
DpnI	GATC	2 cut(s)	1000, 1038
DpnII	GATC	2 cut(s)	998, 1036
DrdI	GACNNNNNNGTC	1 cut(s)	725
DseDI	GACNNNNNNGTC	1 cut(s)	725
Eam1104I	CTCTTC	4 cut(s)	107, 389, 445, 504
EarI	CTCTTC	4 cut(s)	107, 389, 445, 504
Eco105I	TACGTA	2 cut(s)	347, 939
Eco32I	GATATC	2 cut(s)	610, 921
Eco47I	GGWCC	3 cut(s)	60, 622, 812
Eco81I	CCTNAGG	1 cut(s)	614
EcoNI	CCTNNNNNAGG	1 cut(s)	363
EcoRII	CCWGG	1 cut(s)	874
EcoRV	GATATC	2 cut(s)	610, 921
EcoT22I	ATGCAT	1 cut(s)	803
FaeI	CATG	6 cut(s)	605, 629, 805, 848, 899, 962
FatI	CATG	6 cut(s)	601, 625, 801, 844, 895, 958
FauI	CCCGC	2 cut(s)	1081, 1169
Fnu4HI	GCNGC	7 cut(s)	82, 318, 321, 439, 552, 1054, 1123
FokI	GGATG	4 cut(s)	487, 707, 810, 998
Fsp4HI	GCNGC	7 cut(s)	82, 318, 321, 439, 552, 1054, 1123
FspBI	CTAG	6 cut(s)	36, 569, 749, 761, 821, 1206
GlaI	GCGC	3 cut(s)	224, 785, 1083
GluI	GCNGC	7 cut(s)	82, 318, 321, 439, 552, 1054, 1123
GsuI	CTGGAG	1 cut(s)	524
HaeII	RGCGCY	1 cut(s)	787
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	3 cut(s)	93, 442, 1171
HgaI	GACGC	2 cut(s)	543, 754
HhaI	GCGC	3 cut(s)	225, 786, 1084
Hin1II	CATG	6 cut(s)	605, 629, 805, 848, 899, 962
Hin6I	GCGC	3 cut(s)	223, 784, 1082
HinP1I	GCGC	3 cut(s)	223, 784, 1082
HincII	GTYRAC	1 cut(s)	718
HindII	GTYRAC	1 cut(s)	718
HinfI	GANTC	8 cut(s)	259, 338, 371, 383, 455, 1014, 1152, 1209
HpaII	CCGG	3 cut(s)	93, 442, 1171
HphI	GGTGA	4 cut(s)	97, 229, 380, 881
Hpy166II	GTNNAC	4 cut(s)	120, 718, 730, 1165
Hpy188I	TCNGA	6 cut(s)	54, 190, 204, 408, 767, 1041
Hpy188III	TCNNGA	4 cut(s)	36, 558, 569, 613
Hpy8I	GTNNAC	4 cut(s)	120, 718, 730, 1165
Hpy99I	CGWCG	1 cut(s)	748
HpyAV	CCTTC	5 cut(s)	393, 508, 626, 1072, 1175
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	5 cut(s)	346, 470, 689, 732, 938
HpyCH4V	TGCA	5 cut(s)	198, 320, 698, 801, 1125
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 326, 584, 1182
HpyF3I	CTNAG	4 cut(s)	51, 210, 614, 852
HpySE526I	ACGT	5 cut(s)	346, 470, 689, 732, 938
Hsp92II	CATG	6 cut(s)	605, 629, 805, 848, 899, 962
HspAI	GCGC	3 cut(s)	223, 784, 1082
KpnI	GGTACC	1 cut(s)	640
Kzo9I	GATC	2 cut(s)	998, 1036
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	1 cut(s)	1119
Lsp1109I	GCAGC	5 cut(s)	68, 304, 332, 450, 1109
LweI	GCATC	4 cut(s)	465, 528, 685, 788
MaeI	CTAG	6 cut(s)	36, 569, 749, 761, 821, 1206
MaeII	ACGT	5 cut(s)	346, 470, 689, 732, 938
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	2 cut(s)	1000, 1038
MboI	GATC	2 cut(s)	998, 1036
MboII	GAAGA	9 cut(s)	94, 162, 176, 179, 239, 388, 406, 462, 521
MflI	RGATCY	1 cut(s)	998
MluCI	AATT	6 cut(s)	173, 178, 298, 420, 644, 863
MlyI	GAGTC	4 cut(s)	253, 347, 365, 1008
MmeI	TCCRAC	1 cut(s)	397
Mph1103I	ATGCAT	1 cut(s)	803
MroXI	GAANNNNTTC	1 cut(s)	454
MseI	TTAA	3 cut(s)	77, 176, 423
MslI	CAYNNNNRTG	1 cut(s)	1032
MspA1I	CMGCKG	1 cut(s)	910
MspI	CCGG	3 cut(s)	93, 442, 1171
MspR9I	CCNGG	1 cut(s)	876
Mva1269I	GAATGC	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	876
MvnI	CGCG	2 cut(s)	225, 554
MwoI	GCNNNNNNNGC	4 cut(s)	21, 326, 584, 1182
NdeII	GATC	2 cut(s)	998, 1036
NlaIII	CATG	6 cut(s)	605, 629, 805, 848, 899, 962
NlaIV	GGNNCC	2 cut(s)	638, 1057
NmeAIII	GCCGAG	1 cut(s)	1171
NmuCI	GTSAC	1 cut(s)	368
NsiI	ATGCAT	1 cut(s)	803
NspI	RCATGY	1 cut(s)	962
NspV	TTCGAA	1 cut(s)	1212
PciSI	GCTCTTC	1 cut(s)	107
PctI	GAATGC	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	454
PfeI	GAWTC	4 cut(s)	383, 455, 1152, 1209
PkrI	GCNGC	7 cut(s)	83, 319, 322, 440, 553, 1055, 1124
PleI	GAGTC	4 cut(s)	253, 346, 365, 1008
PpsI	GAGTC	4 cut(s)	253, 346, 365, 1008
Ppu21I	YACGTR	5 cut(s)	347, 471, 690, 733, 939
PshBI	ATTAAT	1 cut(s)	423
PsiI	TTATAA	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	874
PspGI	CCWGG	1 cut(s)	874
PspN4I	GGNNCC	2 cut(s)	638, 1057
PspPI	GGNCC	4 cut(s)	23, 60, 622, 812
PstI	CTGCAG	2 cut(s)	322, 1127
PsuI	RGATCY	1 cut(s)	998
PvuII	CAGCTG	1 cut(s)	910
RsaI	GTAC	6 cut(s)	126, 638, 791, 887, 974, 1023
RsaNI	GTAC	6 cut(s)	125, 637, 790, 886, 973, 1022
RseI	CAYNNNNRTG	1 cut(s)	1032
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	3 cut(s)	77, 176, 423
SatI	GCNGC	7 cut(s)	82, 318, 321, 439, 552, 1054, 1123
Sau3AI	GATC	2 cut(s)	998, 1036
Sau96I	GGNCC	4 cut(s)	23, 60, 622, 812
ScaI	AGTACT	1 cut(s)	887
SchI	GAGTC	4 cut(s)	253, 347, 365, 1008
ScrFI	CCNGG	1 cut(s)	876
SfaNI	GCATC	4 cut(s)	465, 528, 685, 788
SfcI	CTRYAG	3 cut(s)	318, 900, 1123
SfuI	TTCGAA	1 cut(s)	1212
SgrAI	CRCCGGYG	1 cut(s)	1170
SinI	GGWCC	3 cut(s)	60, 622, 812
SmiMI	CAYNNNNRTG	1 cut(s)	1032
SnaBI	TACGTA	2 cut(s)	347, 939
SpeI	ACTAGT	1 cut(s)	760
Sse9I	AATT	6 cut(s)	173, 178, 298, 420, 644, 863
SsiI	CCGC	5 cut(s)	552, 1053, 1088, 1168, 1176
SspI	AATATT	1 cut(s)	739
SspMI	CTAG	6 cut(s)	36, 569, 749, 761, 821, 1206
StyD4I	CCNGG	1 cut(s)	874
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	5 cut(s)	349, 473, 692, 735, 941
TaqI	TCGA	5 cut(s)	341, 374, 642, 1017, 1212
TasI	AATT	6 cut(s)	173, 178, 298, 420, 644, 863
TatI	WGTACW	3 cut(s)	789, 885, 1021
TauI	GCSGC	2 cut(s)	554, 1056
TfiI	GAWTC	4 cut(s)	383, 455, 1152, 1209
Tru1I	TTAA	3 cut(s)	77, 176, 423
Tru9I	TTAA	3 cut(s)	77, 176, 423
TscAI	CASTG	1 cut(s)	1132
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	5 cut(s)	81, 317, 320, 438, 1122
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	3 cut(s)	818, 861, 1098
TspGWI	ACGGA	1 cut(s)	881
TspRI	CASTG	1 cut(s)	1132
VpaK11BI	GGWCC	3 cut(s)	60, 622, 812
VspI	ATTAAT	1 cut(s)	423
XagI	CCTNNNNNAGG	1 cut(s)	363
XapI	RAATTY	3 cut(s)	178, 298, 863
XbaI	TCTAGA	2 cut(s)	35, 568
XceI	RCATGY	1 cut(s)	962
XmnI	GAANNNNTTC	1 cut(s)	454
XspI	CTAG	6 cut(s)	36, 569, 749, 761, 821, 1206
ZrmI	AGTACT	1 cut(s)	887
Zsp2I	ATGCAT	1 cut(s)	803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.