Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005984

Physical Location & Seq

Genomic Coordinates Reverse (-)

72314969 .. 72317966

Gene Structure 2998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021144

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGTCTTGGAAAAGCAGAGGAGACCCTTCTTCTTCTTCTAGAAGTGTAATTTCACAGAAATGGACCCTTTTGCTTTGTTTAAGCTGTTTCTGTGCTGGAATGCTCTTCACCAATAGGATGTGGAGTGTTCCGGAAAGTAGAGGTCTAACACGGAGAACAGCTTTGGAAGAAGCGAAATTAAACTTAGTATCAGAGGGTTGCAATCCAAAAGCTTTGCATCAGAAGGAAGTAAAGCGAGAAACTAAGGACATTTTTGGAGAGGTTTATAAGACTCATAACGCTATACAGACACTAGATAAGACTATTTCAAATTTAGAGATGGAATTAGCCGCTGCAAGGGCAACACAAGAGTCTATACGTAGTGGCTCTCCTTCATCAGGTGACTCGAAGACTGACTCATCTGGGAAGAGAAGGTATTTAATGGTTGTTGGAATCAATACTGCTTTTAGCAGCCGGAAAAGAAGAGATTCAGTTCGTGCTACTTGGATGCCTCAAGGCGAGAAAAGGAAGAGACTGGAGGAAGAGAAGGGTATCATCATCCGTTTTGTCATTGGTCACAGTGCCACATCAGGAGGCATTCTAGACAGAGCAGTTGAAGCCGAGGACAGAAAGCATGGAGATCTCCTGAGGCTGGACCACGTTGAAGGATATCTGGAATTGTCTGCCAAGACAAAAATATATTTTGCTACTGCTGTTGCTATGTGGGATGCAGATTTTTATGTCAAAGTCGACGATGATGTCCACGTAAATATTGCGACACTAGGAGAAACATTAGTTAGACACCGAAAAAAATCGCGTCTGTACATTGGATGCATGAAATCTGGTCCTGTTCTGGCACAAAAGGGAGTGAGATACCATGAACCTGAATATTGGAAATTTGGTGAACCTGGAAACAAGTATTTCCGTCATGCTACAGGACAATTATACGCAATCTCAAGAGATTTGGCTACATATATATCAATAAACCAGCATGTCCTCCACAAGTATGCGAATGAGGATGTCTCTTTGGGAGCTTGGTTTATTGGACTTGATGTGGAGCATATCGATGATAGGAGACTATGTTGTGGCACCCCACCTGATTGTGAGTGGAAGGCCCAGGCAGGCAACGTCTGCGTTGCTTCATTTGATTGGAGTTGCAGTGGAATTTGTAGGTCAGCTGAGAGGATTAAGGAAGTCCATCGACGCTGCGGGGAAGGCGAAAACGCTTTATGGAGTGCTTCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

409

Amino Acids

45.98

Weight (kDa)

8.95

Isoelectric Point (pI)

46.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	18 - 114	1.2e-37	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	153 - 350	8e-52	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05170 AT1G05170 AT2G32430
fragaria_vesca	FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140
malus_domestica	MD09G1109300.v1.1 MD17G1097500.v1.1
prunus_persica	Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1
pyrus_communis	pycom09g03200 pycom17g09300
rosa_chinensis	RchiOBHm_Chr2g0159221
rosa_laevigata	RLG00000021144
rosa_multiflora	Rmu_sc0004528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090690
rosa_rugosa	Rorug02G0474800 Rorug02G0474900
rosa_samantha	Rh2AG541700 Rh2BG554300 Rh2CG524400 Rh2DG564100
rosa_wichuraiana	Rw2G044800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
AasI	GACNNNNNNGTC	1 cut(s)	737
AccB1I	GGYRCC	1 cut(s)	1067
AccI	GTMKAC	1 cut(s)	729
AccII	CGCG	1 cut(s)	796
AccIII	TCCGGA	1 cut(s)	130
AciI	CCGC	2 cut(s)	330, 1188
AcsI	RAATTY	3 cut(s)	310, 875, 1143
AfaI	GTAC	1 cut(s)	803
AfiI	CCNNNNNNNGG	3 cut(s)	336, 377, 631
AgsI	TTSAA	3 cut(s)	309, 596, 644
AjnI	CCWGG	2 cut(s)	886, 1095
AluBI	AGCT	5 cut(s)	84, 161, 212, 1013, 1157
AluI	AGCT	5 cut(s)	84, 161, 212, 1013, 1157
Alw26I	GTCTC	4 cut(s)	15, 505, 1006, 1048
Aor13HI	TCCGGA	1 cut(s)	130
AoxI	GGCC	1 cut(s)	1092
ApeKI	GCWGC	3 cut(s)	332, 450, 1185
ApoI	RAATTY	3 cut(s)	310, 875, 1143
Asp700I	GAANNNNTTC	1 cut(s)	466
AspS9I	GGNCC	4 cut(s)	63, 634, 824, 1093
AsuHPI	GGTGA	3 cut(s)	100, 392, 893
AvaII	GGWCC	3 cut(s)	63, 634, 824
AxyI	CCTNAGG	1 cut(s)	626
BanI	GGYRCC	1 cut(s)	1067
BbsI	GAAGAC	1 cut(s)	395
BbvI	GCAGC	3 cut(s)	319, 462, 1172
BccI	CCATC	2 cut(s)	313, 1185
BciT130I	CCWGG	2 cut(s)	888, 1097
BcoDI	GTCTC	4 cut(s)	15, 505, 1006, 1048
BfaI	CTAG	4 cut(s)	39, 293, 581, 761
BfmI	CTRYAG	1 cut(s)	912
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	4 cut(s)	330, 333, 451, 1186
BlsI	GCNGC	4 cut(s)	331, 334, 452, 1187
Bme1390I	CCNGG	2 cut(s)	888, 1097
Bme18I	GGWCC	3 cut(s)	63, 634, 824
BmgT120I	GGNCC	4 cut(s)	63, 634, 824, 1093
BmiI	GGNNCC	2 cut(s)	65, 1069
BmrFI	CCNGG	2 cut(s)	888, 1097
BmsI	GCATC	4 cut(s)	226, 477, 697, 800
BpiI	GAAGAC	1 cut(s)	395
BplI	GAGNNNNNCTC	2 cut(s)	986, 1018
BpmI	CTGGAG	1 cut(s)	536
BpuEI	CTTGAG	2 cut(s)	477, 919
Bsa29I	ATCGAT	1 cut(s)	1044
BsaAI	YACGTR	2 cut(s)	359, 745
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	600, 1095
BsaWI	WCCGGW	1 cut(s)	130
BsaXI	ACNNNNNCTCC	4 cut(s)	1045, 1075, 1123, 1153
Bsc4I	CCNNNNNNNGG	3 cut(s)	336, 377, 631
Bse1I	ACTGG	1 cut(s)	519
Bse21I	CCTNAGG	1 cut(s)	626
BseAI	TCCGGA	1 cut(s)	130
BseBI	CCWGG	2 cut(s)	888, 1097
BseCI	ATCGAT	1 cut(s)	1044
BseDI	CCNNGG	2 cut(s)	600, 1095
BseGI	GGATG	6 cut(s)	123, 492, 537, 712, 815, 1003
BseLI	CCNNNNNNNGG	3 cut(s)	336, 377, 631
BseMII	CTCAG	2 cut(s)	617, 1149
BseNI	ACTGG	1 cut(s)	519
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	3 cut(s)	319, 462, 1172
Bsh1236I	CGCG	1 cut(s)	796
BshFI	GGCC	1 cut(s)	1094
BshNI	GGYRCC	1 cut(s)	1067
BshVI	ATCGAT	1 cut(s)	1044
BsiSI	CCGG	2 cut(s)	131, 454
BslI	CCNNNNNNNGG	3 cut(s)	336, 377, 631
BsmAI	GTCTC	4 cut(s)	15, 505, 1006, 1048
BsmI	GAATGC	2 cut(s)	105, 576
BsnI	GGCC	1 cut(s)	1094
Bso31I	GGTCTC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	130
Bsp1407I	TGTACA	1 cut(s)	801
Bsp143I	GATC	1 cut(s)	619
BspACI	CCGC	2 cut(s)	330, 1188
BspANI	GGCC	1 cut(s)	1094
BspCNI	CTCAG	2 cut(s)	618, 1150
BspDI	ATCGAT	1 cut(s)	1044
BspEI	TCCGGA	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	796
BspLI	GGNNCC	2 cut(s)	65, 1069
BspQI	GCTCTTC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	1067
BspTNI	GGTCTC	1 cut(s)	15
BsrGI	TGTACA	1 cut(s)	801
BsrI	ACTGG	1 cut(s)	519
BssECI	CCNNGG	2 cut(s)	600, 1095
BssMI	GATC	1 cut(s)	619
Bst2UI	CCWGG	2 cut(s)	888, 1097
Bst4CI	ACNGT	1 cut(s)	560
Bst6I	CTCTTC	5 cut(s)	110, 401, 457, 503, 516
BstAPI	GCANNNNNTGC	1 cut(s)	1110
BstAUI	TGTACA	1 cut(s)	801
BstBAI	YACGTR	2 cut(s)	359, 745
BstC8I	GCNNGC	1 cut(s)	1102
BstDEI	CTNAG	4 cut(s)	184, 243, 626, 1158
BstENI	CCTNNNNNAGG	1 cut(s)	375
BstF5I	GGATG	6 cut(s)	123, 492, 537, 712, 815, 1003
BstFNI	CGCG	1 cut(s)	796
BstKTI	GATC	1 cut(s)	622
BstMAI	GTCTC	4 cut(s)	15, 505, 1006, 1048
BstMBI	GATC	1 cut(s)	619
BstMWI	GCNNNNNNNGC	4 cut(s)	338, 596, 1110, 1194
BstNI	CCWGG	2 cut(s)	888, 1097
BstNSI	RCATGY	1 cut(s)	974
BstSCI	CCNGG	2 cut(s)	886, 1095
BstSFI	CTRYAG	1 cut(s)	912
BstSNI	TACGTA	1 cut(s)	359
BstUI	CGCG	1 cut(s)	796
BstV1I	GCAGC	3 cut(s)	319, 462, 1172
BstV2I	GAAGAC	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
Bsu15I	ATCGAT	1 cut(s)	1044
Bsu36I	CCTNAGG	1 cut(s)	626
BsuRI	GGCC	1 cut(s)	1094
BsuTUI	ATCGAT	1 cut(s)	1044
BtsCI	GGATG	6 cut(s)	123, 492, 537, 712, 815, 1003
BtsI	GCAGTG	1 cut(s)	1144
BtsIMutI	CAGTG	2 cut(s)	565, 1144
Cac8I	GCNNGC	1 cut(s)	1102
Cfr13I	GGNCC	4 cut(s)	63, 634, 824, 1093
ClaI	ATCGAT	1 cut(s)	1044
CseI	GACGC	2 cut(s)	785, 1191
Csp6I	GTAC	1 cut(s)	802
CviAII	CATG	5 cut(s)	614, 814, 857, 908, 971
CviQI	GTAC	1 cut(s)	802
DdeI	CTNAG	4 cut(s)	184, 243, 626, 1158
DpnI	GATC	1 cut(s)	621
DpnII	GATC	1 cut(s)	619
DrdI	GACNNNNNNGTC	1 cut(s)	737
DseDI	GACNNNNNNGTC	1 cut(s)	737
Eam1104I	CTCTTC	5 cut(s)	110, 401, 457, 503, 516
EarI	CTCTTC	5 cut(s)	110, 401, 457, 503, 516
Eco105I	TACGTA	1 cut(s)	359
Eco31I	GGTCTC	1 cut(s)	15
Eco32I	GATATC	1 cut(s)	650
Eco47I	GGWCC	3 cut(s)	63, 634, 824
Eco81I	CCTNAGG	1 cut(s)	626
EcoNI	CCTNNNNNAGG	1 cut(s)	375
EcoRII	CCWGG	2 cut(s)	886, 1095
EcoRV	GATATC	1 cut(s)	650
EcoT22I	ATGCAT	1 cut(s)	815
FaeI	CATG	5 cut(s)	617, 817, 860, 911, 974
FatI	CATG	5 cut(s)	613, 813, 856, 907, 970
FauI	CCCGC	1 cut(s)	1181
FblI	GTMKAC	1 cut(s)	729
Fnu4HI	GCNGC	4 cut(s)	330, 333, 451, 1186
FokI	GGATG	6 cut(s)	130, 499, 524, 719, 822, 1010
Fsp4HI	GCNGC	4 cut(s)	330, 333, 451, 1186
FspBI	CTAG	4 cut(s)	39, 293, 581, 761
GluI	GCNGC	4 cut(s)	330, 333, 451, 1186
GsuI	CTGGAG	1 cut(s)	536
HaeIII	GGCC	1 cut(s)	1094
HapII	CCGG	2 cut(s)	131, 454
HgaI	GACGC	2 cut(s)	785, 1191
Hin1II	CATG	5 cut(s)	617, 817, 860, 911, 974
HincII	GTYRAC	1 cut(s)	730
HindII	GTYRAC	1 cut(s)	730
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	6 cut(s)	271, 350, 383, 395, 432, 467
HpaII	CCGG	2 cut(s)	131, 454
HphI	GGTGA	3 cut(s)	100, 392, 893
Hpy166II	GTNNAC	3 cut(s)	730, 742, 884
Hpy188I	TCNGA	2 cut(s)	193, 222
Hpy188III	TCNNGA	7 cut(s)	39, 131, 570, 581, 625, 653, 936
Hpy8I	GTNNAC	3 cut(s)	730, 742, 884
Hpy99I	CGWCG	2 cut(s)	734, 1185
HpyAV	CCTTC	8 cut(s)	36, 217, 381, 405, 520, 638, 1084, 1187
HpyCH4III	ACNGT	1 cut(s)	560
HpyCH4IV	ACGT	4 cut(s)	358, 639, 744, 1107
HpyCH4V	TGCA	6 cut(s)	201, 217, 335, 710, 813, 1137
HpyF10VI	GCNNNNNNNGC	4 cut(s)	338, 596, 1110, 1194
HpyF3I	CTNAG	4 cut(s)	184, 243, 626, 1158
HpySE526I	ACGT	4 cut(s)	358, 639, 744, 1107
Hsp92II	CATG	5 cut(s)	617, 817, 860, 911, 974
Kpn2I	TCCGGA	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	619
LguI	GCTCTTC	1 cut(s)	110
LmnI	GCTCC	2 cut(s)	1010, 1036
Lsp1109I	GCAGC	3 cut(s)	319, 462, 1172
LweI	GCATC	4 cut(s)	226, 477, 697, 800
MaeI	CTAG	4 cut(s)	39, 293, 581, 761
MaeII	ACGT	4 cut(s)	358, 639, 744, 1107
MaeIII	GTNAC	2 cut(s)	380, 554
MalI	GATC	1 cut(s)	621
MboI	GATC	1 cut(s)	619
MflI	RGATCY	1 cut(s)	619
MluCI	AATT	8 cut(s)	48, 176, 310, 323, 656, 875, 920, 1143
MlyI	GAGTC	4 cut(s)	265, 359, 377, 389
MmeI	TCCRAC	1 cut(s)	409
Mph1103I	ATGCAT	1 cut(s)	815
MroI	TCCGGA	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	466
MseI	TTAA	4 cut(s)	80, 179, 419, 1167
MslI	CAYNNNNRTG	3 cut(s)	58, 984, 1044
MspA1I	CMGCKG	2 cut(s)	332, 1157
MspI	CCGG	2 cut(s)	131, 454
MspR9I	CCNGG	2 cut(s)	888, 1097
Mva1269I	GAATGC	2 cut(s)	105, 576
MvaI	CCWGG	2 cut(s)	888, 1097
MvnI	CGCG	1 cut(s)	796
MwoI	GCNNNNNNNGC	4 cut(s)	338, 596, 1110, 1194
NdeII	GATC	1 cut(s)	619
NlaIII	CATG	5 cut(s)	617, 817, 860, 911, 974
NlaIV	GGNNCC	2 cut(s)	65, 1069
NmeAIII	GCCGAG	1 cut(s)	625
NmuCI	GTSAC	2 cut(s)	380, 554
NsiI	ATGCAT	1 cut(s)	815
NspI	RCATGY	1 cut(s)	974
PciSI	GCTCTTC	1 cut(s)	110
PctI	GAATGC	2 cut(s)	105, 576
PdmI	GAANNNNTTC	1 cut(s)	466
PfeI	GAWTC	2 cut(s)	432, 467
PkrI	GCNGC	4 cut(s)	331, 334, 452, 1187
PleI	GAGTC	4 cut(s)	265, 358, 377, 389
PpsI	GAGTC	4 cut(s)	265, 358, 377, 389
Ppu21I	YACGTR	2 cut(s)	359, 745
PsiI	TTATAA	1 cut(s)	267
Psp6I	CCWGG	2 cut(s)	886, 1095
PspGI	CCWGG	2 cut(s)	886, 1095
PspN4I	GGNNCC	2 cut(s)	65, 1069
PspPI	GGNCC	4 cut(s)	63, 634, 824, 1093
PsuI	RGATCY	1 cut(s)	619
PvuII	CAGCTG	1 cut(s)	1157
RsaI	GTAC	1 cut(s)	803
RsaNI	GTAC	1 cut(s)	802
RseI	CAYNNNNRTG	3 cut(s)	58, 984, 1044
SalI	GTCGAC	1 cut(s)	728
SapI	GCTCTTC	1 cut(s)	110
SaqAI	TTAA	4 cut(s)	80, 179, 419, 1167
SatI	GCNGC	4 cut(s)	330, 333, 451, 1186
Sau3AI	GATC	1 cut(s)	619
Sau96I	GGNCC	4 cut(s)	63, 634, 824, 1093
SchI	GAGTC	4 cut(s)	265, 359, 377, 389
ScrFI	CCNGG	2 cut(s)	888, 1097
SfaNI	GCATC	4 cut(s)	226, 477, 697, 800
SfcI	CTRYAG	1 cut(s)	912
SinI	GGWCC	3 cut(s)	63, 634, 824
SmiMI	CAYNNNNRTG	3 cut(s)	58, 984, 1044
SmlI	CTYRAG	2 cut(s)	492, 934
SmoI	CTYRAG	2 cut(s)	492, 934
SnaBI	TACGTA	1 cut(s)	359
Sse9I	AATT	8 cut(s)	48, 176, 310, 323, 656, 875, 920, 1143
SsiI	CCGC	2 cut(s)	330, 1188
SspI	AATATT	2 cut(s)	751, 869
SspMI	CTAG	4 cut(s)	39, 293, 581, 761
StyD4I	CCNGG	2 cut(s)	886, 1095
TaaI	ACNGT	1 cut(s)	560
TaiI	ACGT	4 cut(s)	361, 642, 747, 1110
TaqI	TCGA	4 cut(s)	386, 729, 1044, 1180
TasI	AATT	8 cut(s)	48, 176, 310, 323, 656, 875, 920, 1143
TatI	WGTACW	1 cut(s)	801
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	2 cut(s)	432, 467
Tru1I	TTAA	4 cut(s)	80, 179, 419, 1167
Tru9I	TTAA	4 cut(s)	80, 179, 419, 1167
TscAI	CASTG	2 cut(s)	565, 1144
TseFI	GTSAC	2 cut(s)	380, 554
TseI	GCWGC	3 cut(s)	332, 450, 1185
Tsp45I	GTSAC	2 cut(s)	380, 554
TspDTI	ATGAA	4 cut(s)	363, 830, 873, 1110
TspGWI	ACGGA	3 cut(s)	166, 530, 893
TspRI	CASTG	2 cut(s)	565, 1144
VpaK11BI	GGWCC	3 cut(s)	63, 634, 824
XagI	CCTNNNNNAGG	1 cut(s)	375
XapI	RAATTY	3 cut(s)	310, 875, 1143
XbaI	TCTAGA	2 cut(s)	38, 580
XceI	RCATGY	1 cut(s)	974
XmiI	GTMKAC	1 cut(s)	729
XmnI	GAANNNNTTC	1 cut(s)	466
XspI	CTAG	4 cut(s)	39, 293, 581, 761
Zsp2I	ATGCAT	1 cut(s)	815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.