Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005984

Physical Location & Seq

Genomic Coordinates Reverse (-)

76322108 .. 76325831

Gene Structure 3724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG554300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGTCTTGGAAAAGCAGAGGAGACCCTTCTTCTTCTAGAAGTGTAATTTCACAGAAATGGACCCTTTTGCTTTGTTTAAGCTGCTTCTGTGCTGGAATGCTCTTCACCAATAGGATGTGGAGTGTTCCGGAAAGTAGAGGTCTAACACGGAGAACAGCTTTGGAAGAAGCGAAATTAAACTTAGTATCAGAGGGTTGCAATCCAAAAGCTTTGTATCAGAAGGAAGTAAAGCGAGAAACTAAGGACATTTTTGGAGAGGTTTATAAGACTCATAATGCTATACAGACACTAGATAAGACTATTTCAAATTTAGAGATGGAATTAGCCGCTGCAAGGGCAACACAAGAGTCTATACGTAGTGGCTCTCCTTCATCAGGTGACTTGAAGACTGACTCATCTGGGAAGAGAAGGTATTTAATGGTTGTTGGAATCAATACTGCTTTTAGCAGCCGGAAAAGAAGAGATTCAGTTCGTGCTACTTGGATGCCTCAAGGTGAGAAAAGGAAGAGACTGGAGGAAGAGAAGGGTATCATCATCCGTTTTGTCATTGGTCACAGTGCCACATCAGGAGGCATTCTAGACAGAGCAGTTGAAGCCGAGGACAGAAAGCACGGAGATCTCCTGAGGCTGGACCACGTTGAAGGATATCTGGAATTGTCTGCCAAGACAAAAATATATTTTGCTACTGCTGTTGCTATGTGGGATGCAGATTTTTATGTCAAAGTCGACGATGATGTCCACGTAAATATTGCGACACTAGGAGAAACATTAGTTAGACACCGAAAGAAATCACGTCTGTACATTGGATGCATGAAATCTGGTCCTGTTCTGGCACAAAAGGGAGTGAGATACCATGAACCTGAATATTGGAAATTTGGTGAACCTGGAAACAAGTATTTCCGTCATGCTACAGGACAATTATACGCAATCTCAAGAGATTTGGCTACATATATATCAATAAACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

322

Amino Acids

36.45

Weight (kDa)

9.51

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	17 - 113	7.8e-38	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	152 - 321	4.8e-44	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05170 AT1G05170 AT2G32430
fragaria_vesca	FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140
malus_domestica	MD09G1109300.v1.1 MD17G1097500.v1.1
prunus_persica	Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1
pyrus_communis	pycom09g03200 pycom17g09300
rosa_chinensis	RchiOBHm_Chr2g0159221
rosa_laevigata	RLG00000021144
rosa_multiflora	Rmu_sc0004528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090690
rosa_rugosa	Rorug02G0474800 Rorug02G0474900
rosa_samantha	Rh2AG541700 Rh2BG554300 Rh2CG524400 Rh2DG564100
rosa_wichuraiana	Rw2G044800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	264
AasI	GACNNNNNNGTC	1 cut(s)	734
AccI	GTMKAC	1 cut(s)	726
AccIII	TCCGGA	1 cut(s)	127
AciI	CCGC	1 cut(s)	327
AcsI	RAATTY	2 cut(s)	307, 872
AfaI	GTAC	1 cut(s)	800
AfiI	CCNNNNNNNGG	3 cut(s)	333, 374, 628
AgsI	TTSAA	4 cut(s)	306, 385, 593, 641
AjiI	CACGTC	1 cut(s)	794
AjnI	CCWGG	1 cut(s)	883
AluBI	AGCT	3 cut(s)	81, 158, 209
AluI	AGCT	3 cut(s)	81, 158, 209
Alw26I	GTCTC	2 cut(s)	15, 502
Aor13HI	TCCGGA	1 cut(s)	127
ApeKI	GCWGC	3 cut(s)	81, 329, 447
ApoI	RAATTY	2 cut(s)	307, 872
Asp700I	GAANNNNTTC	1 cut(s)	463
AspS9I	GGNCC	3 cut(s)	60, 631, 821
AsuHPI	GGTGA	4 cut(s)	97, 389, 506, 890
AvaII	GGWCC	3 cut(s)	60, 631, 821
AxyI	CCTNAGG	1 cut(s)	623
BbsI	GAAGAC	1 cut(s)	392
BbvI	GCAGC	3 cut(s)	68, 316, 459
BccI	CCATC	1 cut(s)	310
BciT130I	CCWGG	1 cut(s)	885
BcoDI	GTCTC	2 cut(s)	15, 502
BfaI	CTAG	4 cut(s)	36, 290, 578, 758
BfmI	CTRYAG	1 cut(s)	909
BglII	AGATCT	1 cut(s)	616
BisI	GCNGC	4 cut(s)	82, 327, 330, 448
BlsI	GCNGC	4 cut(s)	83, 328, 331, 449
Bme1390I	CCNGG	1 cut(s)	885
Bme18I	GGWCC	3 cut(s)	60, 631, 821
BmgBI	CACGTC	1 cut(s)	794
BmgT120I	GGNCC	3 cut(s)	60, 631, 821
BmiI	GGNNCC	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	885
BmsI	GCATC	3 cut(s)	474, 694, 797
BpiI	GAAGAC	1 cut(s)	392
BpmI	CTGGAG	1 cut(s)	533
BpuEI	CTTGAG	2 cut(s)	474, 916
BsaAI	YACGTR	2 cut(s)	356, 742
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	597
BsaWI	WCCGGW	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	3 cut(s)	333, 374, 628
Bse1I	ACTGG	2 cut(s)	516, 964
Bse21I	CCTNAGG	1 cut(s)	623
BseAI	TCCGGA	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	885
BseDI	CCNNGG	1 cut(s)	597
BseGI	GGATG	5 cut(s)	120, 489, 534, 709, 812
BseLI	CCNNNNNNNGG	3 cut(s)	333, 374, 628
BseMII	CTCAG	1 cut(s)	614
BseNI	ACTGG	2 cut(s)	516, 964
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	3 cut(s)	68, 316, 459
BsiSI	CCGG	2 cut(s)	128, 451
BslI	CCNNNNNNNGG	3 cut(s)	333, 374, 628
BsmAI	GTCTC	2 cut(s)	15, 502
BsmI	GAATGC	2 cut(s)	102, 573
Bso31I	GGTCTC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	127
Bsp1407I	TGTACA	1 cut(s)	798
Bsp143I	GATC	1 cut(s)	616
BspACI	CCGC	1 cut(s)	327
BspCNI	CTCAG	1 cut(s)	615
BspEI	TCCGGA	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	62
BspQI	GCTCTTC	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	15
BsrGI	TGTACA	1 cut(s)	798
BsrI	ACTGG	2 cut(s)	516, 964
BssECI	CCNNGG	1 cut(s)	597
BssMI	GATC	1 cut(s)	616
Bst2UI	CCWGG	1 cut(s)	885
Bst4CI	ACNGT	1 cut(s)	557
Bst6I	CTCTTC	5 cut(s)	107, 398, 454, 500, 513
BstAUI	TGTACA	1 cut(s)	798
BstBAI	YACGTR	2 cut(s)	356, 742
BstDEI	CTNAG	3 cut(s)	181, 240, 623
BstENI	CCTNNNNNAGG	1 cut(s)	372
BstF5I	GGATG	5 cut(s)	120, 489, 534, 709, 812
BstKTI	GATC	1 cut(s)	619
BstMAI	GTCTC	2 cut(s)	15, 502
BstMBI	GATC	1 cut(s)	616
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 593
BstNI	CCWGG	1 cut(s)	885
BstSCI	CCNGG	1 cut(s)	883
BstSFI	CTRYAG	1 cut(s)	909
BstSNI	TACGTA	1 cut(s)	356
BstV1I	GCAGC	3 cut(s)	68, 316, 459
BstV2I	GAAGAC	1 cut(s)	392
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
Bsu36I	CCTNAGG	1 cut(s)	623
BtrI	CACGTC	1 cut(s)	794
BtsCI	GGATG	5 cut(s)	120, 489, 534, 709, 812
BtsIMutI	CAGTG	1 cut(s)	562
Cfr13I	GGNCC	3 cut(s)	60, 631, 821
Csp6I	GTAC	1 cut(s)	799
CviAII	CATG	3 cut(s)	811, 854, 905
CviJI	RGCY	9 cut(s)	81, 158, 209, 326, 363, 450, 596, 628, 944
CviKI_1	RGCY	9 cut(s)	81, 158, 209, 326, 363, 450, 596, 628, 944
CviQI	GTAC	1 cut(s)	799
DdeI	CTNAG	3 cut(s)	181, 240, 623
DpnI	GATC	1 cut(s)	618
DpnII	GATC	1 cut(s)	616
DrdI	GACNNNNNNGTC	1 cut(s)	734
DseDI	GACNNNNNNGTC	1 cut(s)	734
Eam1104I	CTCTTC	5 cut(s)	107, 398, 454, 500, 513
EarI	CTCTTC	5 cut(s)	107, 398, 454, 500, 513
Eco105I	TACGTA	1 cut(s)	356
Eco31I	GGTCTC	1 cut(s)	15
Eco32I	GATATC	1 cut(s)	647
Eco47I	GGWCC	3 cut(s)	60, 631, 821
Eco81I	CCTNAGG	1 cut(s)	623
EcoNI	CCTNNNNNAGG	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	883
EcoRV	GATATC	1 cut(s)	647
EcoT22I	ATGCAT	1 cut(s)	812
FaeI	CATG	3 cut(s)	814, 857, 908
FatI	CATG	3 cut(s)	810, 853, 904
FblI	GTMKAC	1 cut(s)	726
Fnu4HI	GCNGC	4 cut(s)	82, 327, 330, 448
FokI	GGATG	5 cut(s)	127, 496, 521, 716, 819
Fsp4HI	GCNGC	4 cut(s)	82, 327, 330, 448
FspBI	CTAG	4 cut(s)	36, 290, 578, 758
GluI	GCNGC	4 cut(s)	82, 327, 330, 448
GsuI	CTGGAG	1 cut(s)	533
HapII	CCGG	2 cut(s)	128, 451
Hin1II	CATG	3 cut(s)	814, 857, 908
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	5 cut(s)	268, 347, 392, 429, 464
HpaII	CCGG	2 cut(s)	128, 451
HphI	GGTGA	4 cut(s)	97, 389, 506, 890
Hpy166II	GTNNAC	3 cut(s)	727, 739, 881
Hpy188I	TCNGA	2 cut(s)	190, 219
Hpy188III	TCNNGA	7 cut(s)	36, 128, 567, 578, 622, 650, 933
Hpy8I	GTNNAC	3 cut(s)	727, 739, 881
Hpy99I	CGWCG	1 cut(s)	731
HpyAV	CCTTC	6 cut(s)	36, 214, 378, 402, 517, 635
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4IV	ACGT	4 cut(s)	355, 636, 741, 793
HpyCH4V	TGCA	4 cut(s)	198, 332, 707, 810
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 593
HpyF3I	CTNAG	3 cut(s)	181, 240, 623
HpySE526I	ACGT	4 cut(s)	355, 636, 741, 793
Hsp92II	CATG	3 cut(s)	814, 857, 908
Kpn2I	TCCGGA	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	616
LguI	GCTCTTC	1 cut(s)	107
Lsp1109I	GCAGC	3 cut(s)	68, 316, 459
LweI	GCATC	3 cut(s)	474, 694, 797
MaeI	CTAG	4 cut(s)	36, 290, 578, 758
MaeII	ACGT	4 cut(s)	355, 636, 741, 793
MaeIII	GTNAC	2 cut(s)	377, 551
MalI	GATC	1 cut(s)	618
MboI	GATC	1 cut(s)	616
MboII	GAAGA	9 cut(s)	21, 24, 94, 176, 397, 415, 471, 517, 530
MflI	RGATCY	1 cut(s)	616
MluCI	AATT	7 cut(s)	45, 173, 307, 320, 653, 872, 917
MlyI	GAGTC	3 cut(s)	262, 356, 386
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	9 cut(s)	11, 131, 184, 250, 498, 508, 563, 592, 618
Mph1103I	ATGCAT	1 cut(s)	812
MroI	TCCGGA	1 cut(s)	127
MroXI	GAANNNNTTC	1 cut(s)	463
MseI	TTAA	3 cut(s)	77, 176, 416
MslI	CAYNNNNRTG	1 cut(s)	55
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	2 cut(s)	128, 451
MspR9I	CCNGG	1 cut(s)	885
Mva1269I	GAATGC	2 cut(s)	102, 573
MvaI	CCWGG	1 cut(s)	885
MwoI	GCNNNNNNNGC	2 cut(s)	335, 593
NdeII	GATC	1 cut(s)	616
NlaIII	CATG	3 cut(s)	814, 857, 908
NlaIV	GGNNCC	1 cut(s)	62
NmeAIII	GCCGAG	1 cut(s)	622
NmuCI	GTSAC	2 cut(s)	377, 551
NsiI	ATGCAT	1 cut(s)	812
PciSI	GCTCTTC	1 cut(s)	107
PctI	GAATGC	2 cut(s)	102, 573
PdmI	GAANNNNTTC	1 cut(s)	463
PfeI	GAWTC	2 cut(s)	429, 464
PkrI	GCNGC	4 cut(s)	83, 328, 331, 449
PleI	GAGTC	3 cut(s)	262, 355, 386
PpsI	GAGTC	3 cut(s)	262, 355, 386
Ppu21I	YACGTR	2 cut(s)	356, 742
PsiI	TTATAA	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	883
PspGI	CCWGG	1 cut(s)	883
PspN4I	GGNNCC	1 cut(s)	62
PspPI	GGNCC	3 cut(s)	60, 631, 821
PsuI	RGATCY	1 cut(s)	616
RsaI	GTAC	1 cut(s)	800
RsaNI	GTAC	1 cut(s)	799
RseI	CAYNNNNRTG	1 cut(s)	55
SalI	GTCGAC	1 cut(s)	725
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	3 cut(s)	77, 176, 416
SatI	GCNGC	4 cut(s)	82, 327, 330, 448
Sau3AI	GATC	1 cut(s)	616
Sau96I	GGNCC	3 cut(s)	60, 631, 821
SchI	GAGTC	3 cut(s)	262, 356, 386
ScrFI	CCNGG	1 cut(s)	885
SfaNI	GCATC	3 cut(s)	474, 694, 797
SfcI	CTRYAG	1 cut(s)	909
SinI	GGWCC	3 cut(s)	60, 631, 821
SmiMI	CAYNNNNRTG	1 cut(s)	55
SmlI	CTYRAG	2 cut(s)	489, 931
SmoI	CTYRAG	2 cut(s)	489, 931
SnaBI	TACGTA	1 cut(s)	356
Sse9I	AATT	7 cut(s)	45, 173, 307, 320, 653, 872, 917
SsiI	CCGC	1 cut(s)	327
SspI	AATATT	2 cut(s)	748, 866
SspMI	CTAG	4 cut(s)	36, 290, 578, 758
StyD4I	CCNGG	1 cut(s)	883
TaaI	ACNGT	1 cut(s)	557
TaiI	ACGT	4 cut(s)	358, 639, 744, 796
TaqI	TCGA	1 cut(s)	726
TasI	AATT	7 cut(s)	45, 173, 307, 320, 653, 872, 917
TatI	WGTACW	1 cut(s)	798
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	2 cut(s)	429, 464
Tru1I	TTAA	3 cut(s)	77, 176, 416
Tru9I	TTAA	3 cut(s)	77, 176, 416
TscAI	CASTG	1 cut(s)	562
TseFI	GTSAC	2 cut(s)	377, 551
TseI	GCWGC	3 cut(s)	81, 329, 447
Tsp45I	GTSAC	2 cut(s)	377, 551
TspDTI	ATGAA	3 cut(s)	360, 827, 870
TspGWI	ACGGA	4 cut(s)	163, 527, 627, 890
TspRI	CASTG	1 cut(s)	562
VpaK11BI	GGWCC	3 cut(s)	60, 631, 821
XagI	CCTNNNNNAGG	1 cut(s)	372
XapI	RAATTY	2 cut(s)	307, 872
XbaI	TCTAGA	2 cut(s)	35, 577
XmiI	GTMKAC	1 cut(s)	726
XmnI	GAANNNNTTC	1 cut(s)	463
XspI	CTAG	4 cut(s)	36, 290, 578, 758
Zsp2I	ATGCAT	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.