Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005984

Physical Location & Seq

Genomic Coordinates Forward (+)

8257162 .. 8261235

Gene Structure 4074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1097500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGTCTTGGAAAAGCAGAGGAGACCCATCTGCTTCTAGAAGTTTTATTTCTCAGAAATGGACCCTTTTTCTTTGTTTAAGCTGCTTCTGTGCTGGAATGTTCTTCACCAATAGAATGTGGACTATTCCAGAAAGTAAGGGTATCACAAGGAGAACAGCTATGGAAGAAGAAACATTAAACTTAGTTTCCGAGGGTTGCAATCCGAAATCTTTGAATCAGAAGGAGGTACAGCGCGAAAATAAGGACATCTTCGGGGAGGTTTATAAAACTCATAATGCTATACAGACATTAGATAAGACTATTTCAAATTTAGAGATGGAATTAGCTGCAGCAAGGGCAACACAGGAGTCAATACGTAGTGGCTCTCCATTATCAGGAGACTCAAAGACTGATTCAACCGGGAAGAGAAGGTATCTGATGGTTGTTGGAATTAATACTGCTTTTAGCAGCCGGAAAAGAAGAGATTCAGTTCGTGCTACGTGGATGCCACAAGGCGAGAAACGAAAGAGGCTGGAGGAAGAGAAGGGTATCATCATTCGCTTTGTCATTGGTCATAGTGCCACGTCAGGAGGTATTCTAGATAGAGCTGTTGAAGCAGAGGGCAGAAAGCATGGAGATATCCTGAGGCTGGACCATGTTGAAGGGTACCTCGAATTGTCGGCCAAGACAAAGATATATTTTGCTACTGCTGTTGCTACGTGGGATGCAGATTTTTATGTCAAAGTTGATGATGATGTCCACGTAAATATTGCGACACTAGGAGAAACACTAGTCAGACACCGAAAGAAACAGCACCTCTACATTGGATGCATGAAATCTGGTCCTGTTCTAGCACAAAAGGGAGTGAGATATCATGAACCCGAGTATTGGAAATTTGGTGAACCAGGAAACAAGTACTTCCGTCATGCTACAGGACAGCTGTATGCTATATCAAAAGATTTGGCTACGTATATATCAATAAACCAGCATGTCCTACACAAGTACGCTAACGAGGATGTCTCACTGGGAGCTTGGTTTATTGGACTCGATGTGCAGCATATTGATGACCGGAGACTATGTTGCGGCACCCCACCCGATTGTGAGTGGAAGGCTCAGGCTGGCAACATCTGTGTTGCTTCATTTGATTGGACCTGCAGTGGGATTTGTAAGTCAGCCGAGAGAATCAAGGAAGTCCACCGCCGGTGTGGGGAAGGCGAAAACGCCTTGTGGAGTGCTACTTTCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

409

Amino Acids

46.13

Weight (kDa)

8.87

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	17 - 113	1.7e-38	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	152 - 349	4e-51	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05170 AT1G05170 AT2G32430
fragaria_vesca	FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140
malus_domestica	MD09G1109300.v1.1 MD17G1097500.v1.1
prunus_persica	Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1
pyrus_communis	pycom09g03200 pycom17g09300
rosa_chinensis	RchiOBHm_Chr2g0159221
rosa_laevigata	RLG00000021144
rosa_multiflora	Rmu_sc0004528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090690
rosa_rugosa	Rorug02G0474800 Rorug02G0474900
rosa_samantha	Rh2AG541700 Rh2BG554300 Rh2CG524400 Rh2DG564100
rosa_wichuraiana	Rw2G044800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	264
Acc36I	ACCTGC	1 cut(s)	1139
Acc65I	GGTACC	1 cut(s)	645
AccB1I	GGYRCC	2 cut(s)	645, 1064
AccII	CGCG	1 cut(s)	234
AciI	CCGC	2 cut(s)	1062, 1177
AcoI	YGGCCR	1 cut(s)	660
AcsI	RAATTY	2 cut(s)	307, 872
AfaI	GTAC	4 cut(s)	228, 647, 896, 983
AfiI	CCNNNNNNNGG	5 cut(s)	374, 628, 867, 1137, 1186
AgsI	TTSAA	6 cut(s)	214, 306, 396, 593, 641, 1222
AhlI	ACTAGT	1 cut(s)	769
AjiI	CACGTC	1 cut(s)	564
AjnI	CCWGG	1 cut(s)	883
AluBI	AGCT	6 cut(s)	81, 158, 326, 587, 919, 1010
AluI	AGCT	6 cut(s)	81, 158, 326, 587, 919, 1010
Alw26I	GTCTC	4 cut(s)	15, 372, 1003, 1045
Ama87I	CYCGRG	1 cut(s)	860
AoxI	GGCC	1 cut(s)	660
ApeKI	GCWGC	5 cut(s)	81, 326, 329, 447, 1033
ApoI	RAATTY	2 cut(s)	307, 872
AseI	ATTAAT	1 cut(s)	432
Asp700I	GAANNNNTTC	1 cut(s)	463
Asp718I	GGTACC	1 cut(s)	645
AspLEI	GCGC	1 cut(s)	234
AspS9I	GGNCC	4 cut(s)	60, 631, 821, 1128
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	2 cut(s)	97, 890
AvaI	CYCGRG	1 cut(s)	860
AvaII	GGWCC	4 cut(s)	60, 631, 821, 1128
AxyI	CCTNAGG	1 cut(s)	623
BanI	GGYRCC	2 cut(s)	645, 1064
BbvI	GCAGC	5 cut(s)	68, 313, 341, 459, 1045
BccI	CCATC	3 cut(s)	34, 310, 412
BciT130I	CCWGG	1 cut(s)	885
BcnI	CCSGG	1 cut(s)	400
BcoDI	GTCTC	4 cut(s)	15, 372, 1003, 1045
BcuI	ACTAGT	1 cut(s)	769
BfaI	CTAG	5 cut(s)	36, 578, 758, 770, 830
BfmI	CTRYAG	3 cut(s)	327, 909, 1132
BfuAI	ACCTGC	1 cut(s)	1139
BisI	GCNGC	6 cut(s)	82, 327, 330, 448, 1034, 1063
BlsI	GCNGC	6 cut(s)	83, 328, 331, 449, 1035, 1064
BmcAI	AGTACT	1 cut(s)	896
Bme1390I	CCNGG	2 cut(s)	400, 885
Bme18I	GGWCC	4 cut(s)	60, 631, 821, 1128
BmeT110I	CYCGRG	1 cut(s)	860
BmgBI	CACGTC	1 cut(s)	564
BmgT120I	GGNCC	4 cut(s)	60, 631, 821, 1128
BmiI	GGNNCC	3 cut(s)	62, 647, 1066
BmrFI	CCNGG	2 cut(s)	400, 885
BmrI	ACTGGG	1 cut(s)	1013
BmsI	GCATC	3 cut(s)	474, 694, 797
BmuI	ACTGGG	1 cut(s)	1013
BplI	GAGNNNNNCTC	2 cut(s)	983, 1015
BpmI	CTGGAG	1 cut(s)	533
Bpu10I	CCTNAGC	1 cut(s)	1092
BpuMI	CCSGG	1 cut(s)	400
BsaAI	YACGTR	5 cut(s)	356, 480, 699, 742, 948
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	1047
BsaXI	ACNNNNNCTCC	2 cut(s)	1042, 1072
Bsc4I	CCNNNNNNNGG	5 cut(s)	374, 628, 867, 1137, 1186
Bse118I	RCCGGY	1 cut(s)	1179
Bse1I	ACTGG	1 cut(s)	1008
Bse21I	CCTNAGG	1 cut(s)	623
BseBI	CCWGG	1 cut(s)	885
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	4 cut(s)	489, 709, 812, 1000
BseLI	CCNNNNNNNGG	5 cut(s)	374, 628, 867, 1137, 1186
BseMII	CTCAG	3 cut(s)	65, 614, 1106
BseNI	ACTGG	1 cut(s)	1008
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	5 cut(s)	68, 313, 341, 459, 1045
BsgI	GTGCAG	1 cut(s)	1052
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	662
BshNI	GGYRCC	2 cut(s)	645, 1064
BsiHKCI	CYCGRG	1 cut(s)	860
BsiSI	CCGG	4 cut(s)	399, 451, 1048, 1180
BslI	CCNNNNNNNGG	5 cut(s)	374, 628, 867, 1137, 1186
BsmAI	GTCTC	4 cut(s)	15, 372, 1003, 1045
BsnI	GGCC	1 cut(s)	662
Bso31I	GGTCTC	1 cut(s)	15
BsoBI	CYCGRG	1 cut(s)	860
BspACI	CCGC	2 cut(s)	1062, 1177
BspANI	GGCC	1 cut(s)	662
BspCNI	CTCAG	3 cut(s)	64, 615, 1105
BspFNI	CGCG	1 cut(s)	234
BspHI	TCATGA	1 cut(s)	853
BspLI	GGNNCC	3 cut(s)	62, 647, 1066
BspMAI	CTGCAG	2 cut(s)	331, 1136
BspMI	ACCTGC	1 cut(s)	1139
BspT107I	GGYRCC	2 cut(s)	645, 1064
BspTNI	GGTCTC	1 cut(s)	15
BsrFI	RCCGGY	1 cut(s)	1179
BsrI	ACTGG	1 cut(s)	1008
BssAI	RCCGGY	1 cut(s)	1179
BssECI	CCNNGG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	885
Bst6I	CTCTTC	3 cut(s)	398, 454, 513
BstBAI	YACGTR	5 cut(s)	356, 480, 699, 742, 948
BstC8I	GCNNGC	1 cut(s)	1099
BstDEI	CTNAG	4 cut(s)	51, 181, 623, 1092
BstF5I	GGATG	4 cut(s)	489, 709, 812, 1000
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	234
BstMAI	GTCTC	4 cut(s)	15, 372, 1003, 1045
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 593
BstNI	CCWGG	1 cut(s)	885
BstNSI	RCATGY	1 cut(s)	971
BstSCI	CCNGG	2 cut(s)	398, 883
BstSFI	CTRYAG	3 cut(s)	327, 909, 1132
BstSNI	TACGTA	2 cut(s)	356, 948
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	5 cut(s)	68, 313, 341, 459, 1045
Bsu36I	CCTNAGG	1 cut(s)	623
BsuRI	GGCC	1 cut(s)	662
BtrI	CACGTC	1 cut(s)	564
BtsCI	GGATG	4 cut(s)	489, 709, 812, 1000
BtsI	GCAGTG	1 cut(s)	1141
BtsIMutI	CAGTG	2 cut(s)	1001, 1141
BveI	ACCTGC	1 cut(s)	1139
Cac8I	GCNNGC	1 cut(s)	1099
CciI	TCATGA	1 cut(s)	853
CfoI	GCGC	1 cut(s)	234
Cfr10I	RCCGGY	1 cut(s)	1179
Cfr13I	GGNCC	4 cut(s)	60, 631, 821, 1128
Csp6I	GTAC	4 cut(s)	227, 646, 895, 982
CviAII	CATG	6 cut(s)	611, 635, 811, 854, 905, 968
CviQI	GTAC	4 cut(s)	227, 646, 895, 982
DdeI	CTNAG	4 cut(s)	51, 181, 623, 1092
EaeI	YGGCCR	1 cut(s)	660
Eam1104I	CTCTTC	3 cut(s)	398, 454, 513
EarI	CTCTTC	3 cut(s)	398, 454, 513
Eco105I	TACGTA	2 cut(s)	356, 948
Eco31I	GGTCTC	1 cut(s)	15
Eco32I	GATATC	2 cut(s)	619, 851
Eco47I	GGWCC	4 cut(s)	60, 631, 821, 1128
Eco81I	CCTNAGG	1 cut(s)	623
Eco88I	CYCGRG	1 cut(s)	860
EcoRII	CCWGG	1 cut(s)	883
EcoRV	GATATC	2 cut(s)	619, 851
EcoT22I	ATGCAT	1 cut(s)	812
FaeI	CATG	6 cut(s)	614, 638, 814, 857, 908, 971
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FatI	CATG	6 cut(s)	610, 634, 810, 853, 904, 967
Fnu4HI	GCNGC	6 cut(s)	82, 327, 330, 448, 1034, 1063
FokI	GGATG	4 cut(s)	496, 716, 819, 1007
Fsp4HI	GCNGC	6 cut(s)	82, 327, 330, 448, 1034, 1063
FspBI	CTAG	5 cut(s)	36, 578, 758, 770, 830
GlaI	GCGC	1 cut(s)	233
GluI	GCNGC	6 cut(s)	82, 327, 330, 448, 1034, 1063
GsuI	CTGGAG	1 cut(s)	533
HaeIII	GGCC	1 cut(s)	662
HapII	CCGG	4 cut(s)	399, 451, 1048, 1180
HhaI	GCGC	1 cut(s)	234
Hin1II	CATG	6 cut(s)	614, 638, 814, 857, 908, 971
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HinfI	GANTC	7 cut(s)	214, 347, 380, 392, 464, 1023, 1161
HpaII	CCGG	4 cut(s)	399, 451, 1048, 1180
HphI	GGTGA	2 cut(s)	97, 890
Hpy166II	GTNNAC	4 cut(s)	120, 739, 881, 1174
Hpy188I	TCNGA	6 cut(s)	54, 190, 204, 219, 417, 776
Hpy188III	TCNNGA	7 cut(s)	36, 128, 375, 567, 578, 622, 854
Hpy8I	GTNNAC	4 cut(s)	120, 739, 881, 1174
HpyAV	CCTTC	6 cut(s)	214, 402, 517, 635, 1081, 1184
HpyCH4IV	ACGT	6 cut(s)	355, 479, 563, 698, 741, 947
HpyCH4V	TGCA	6 cut(s)	198, 329, 707, 810, 1033, 1134
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 593
HpyF3I	CTNAG	4 cut(s)	51, 181, 623, 1092
HpySE526I	ACGT	6 cut(s)	355, 479, 563, 698, 741, 947
Hsp92II	CATG	6 cut(s)	614, 638, 814, 857, 908, 971
HspAI	GCGC	1 cut(s)	232
KpnI	GGTACC	1 cut(s)	649
LmnI	GCTCC	1 cut(s)	1007
Lsp1109I	GCAGC	5 cut(s)	68, 313, 341, 459, 1045
LweI	GCATC	3 cut(s)	474, 694, 797
MaeI	CTAG	5 cut(s)	36, 578, 758, 770, 830
MaeII	ACGT	6 cut(s)	355, 479, 563, 698, 741, 947
MboII	GAAGA	7 cut(s)	94, 176, 179, 241, 415, 471, 530
MluCI	AATT	5 cut(s)	307, 320, 429, 653, 872
MlyI	GAGTC	3 cut(s)	356, 374, 1017
MmeI	TCCRAC	1 cut(s)	406
Mph1103I	ATGCAT	1 cut(s)	812
MroXI	GAANNNNTTC	1 cut(s)	463
MseI	TTAA	3 cut(s)	77, 176, 432
MslI	CAYNNNNRTG	1 cut(s)	1041
MspA1I	CMGCKG	1 cut(s)	919
MspI	CCGG	4 cut(s)	399, 451, 1048, 1180
MspR9I	CCNGG	2 cut(s)	400, 885
MvaI	CCWGG	1 cut(s)	885
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	2 cut(s)	335, 593
NciI	CCSGG	1 cut(s)	400
NlaIII	CATG	6 cut(s)	614, 638, 814, 857, 908, 971
NlaIV	GGNNCC	3 cut(s)	62, 647, 1066
NmeAIII	GCCGAG	1 cut(s)	1180
NsiI	ATGCAT	1 cut(s)	812
NspI	RCATGY	1 cut(s)	971
PagI	TCATGA	1 cut(s)	853
PdmI	GAANNNNTTC	1 cut(s)	463
PfeI	GAWTC	4 cut(s)	214, 392, 464, 1161
PkrI	GCNGC	6 cut(s)	83, 328, 331, 449, 1035, 1064
PleI	GAGTC	3 cut(s)	355, 374, 1017
PpsI	GAGTC	3 cut(s)	355, 374, 1017
Ppu21I	YACGTR	5 cut(s)	356, 480, 699, 742, 948
PshBI	ATTAAT	1 cut(s)	432
PsiI	TTATAA	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	883
PspGI	CCWGG	1 cut(s)	883
PspN4I	GGNNCC	3 cut(s)	62, 647, 1066
PspPI	GGNCC	4 cut(s)	60, 631, 821, 1128
PstI	CTGCAG	2 cut(s)	331, 1136
PvuII	CAGCTG	1 cut(s)	919
RsaI	GTAC	4 cut(s)	228, 647, 896, 983
RsaNI	GTAC	4 cut(s)	227, 646, 895, 982
RseI	CAYNNNNRTG	1 cut(s)	1041
SaqAI	TTAA	3 cut(s)	77, 176, 432
SatI	GCNGC	6 cut(s)	82, 327, 330, 448, 1034, 1063
Sau96I	GGNCC	4 cut(s)	60, 631, 821, 1128
ScaI	AGTACT	1 cut(s)	896
SchI	GAGTC	3 cut(s)	356, 374, 1017
ScrFI	CCNGG	2 cut(s)	400, 885
SfaNI	GCATC	3 cut(s)	474, 694, 797
SfcI	CTRYAG	3 cut(s)	327, 909, 1132
SgrAI	CRCCGGYG	1 cut(s)	1179
SinI	GGWCC	4 cut(s)	60, 631, 821, 1128
SmiMI	CAYNNNNRTG	1 cut(s)	1041
SnaBI	TACGTA	2 cut(s)	356, 948
SpeI	ACTAGT	1 cut(s)	769
Sse9I	AATT	5 cut(s)	307, 320, 429, 653, 872
SsiI	CCGC	2 cut(s)	1062, 1177
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	5 cut(s)	36, 578, 758, 770, 830
StyD4I	CCNGG	2 cut(s)	398, 883
TaiI	ACGT	6 cut(s)	358, 482, 566, 701, 744, 950
TaqI	TCGA	2 cut(s)	651, 1026
TasI	AATT	5 cut(s)	307, 320, 429, 653, 872
TatI	WGTACW	1 cut(s)	894
TauI	GCSGC	1 cut(s)	1065
TfiI	GAWTC	4 cut(s)	214, 392, 464, 1161
Tru1I	TTAA	3 cut(s)	77, 176, 432
Tru9I	TTAA	3 cut(s)	77, 176, 432
TscAI	CASTG	2 cut(s)	1008, 1141
TseI	GCWGC	5 cut(s)	81, 326, 329, 447, 1033
TspDTI	ATGAA	3 cut(s)	827, 870, 1107
TspGWI	ACGGA	1 cut(s)	890
TspRI	CASTG	2 cut(s)	1008, 1141
VpaK11BI	GGWCC	4 cut(s)	60, 631, 821, 1128
VspI	ATTAAT	1 cut(s)	432
XapI	RAATTY	2 cut(s)	307, 872
XbaI	TCTAGA	2 cut(s)	35, 577
XceI	RCATGY	1 cut(s)	971
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1181
XmnI	GAANNNNTTC	1 cut(s)	463
XspI	CTAG	5 cut(s)	36, 578, 758, 770, 830
ZrmI	AGTACT	1 cut(s)	896
Zsp2I	ATGCAT	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.