Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005984

Physical Location & Seq

Genomic Coordinates Reverse (-)

33430359 .. 33435150

Gene Structure 4792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g43140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGTCTTGGAAAAGCAGAGGAGACTCTTCTTCTTCTAGAAATGTAATTTCACAGAAATGGACTCTCTTGCTTTGTTTAAGCTGCTTCTGTGCTGGAATGCTCTTCACCAATAGGATGTGGAGTGTTCCTGAAAGTAAAGGTATAACACGGAGAACAACATTGGAAGAGGAGAAGTTAAAATTAGTATCAGAGGGTTGCCATCCAAAAGCTTTGCATCAGAAGGAAGTAAAGCGAGAAACTAAGGACATTATTGGAGAAGTTTTTAAGACTCATAATGCTATACAGACACTAGATAAGACTATTTCAAATTTAGAGATGGAATTAGCTGCTGCAAGGGCAACACAAGAGTCTATACGTAGTGGCGCCCCTTCATCAGGTGACTCGAAGACTGACTCATCTGGGAAGAGGAGGTATTTAATGGTTGTTGGAATCAATACTGCTTTTAGCAGCCGGAAAAGAAGAGATTCAGTTCGTGCTACTTGGATGCCTCAAGGTGAGAAAAGAAAGAGGCTGGAGGAAGAGAAGGGTATCATCATTCGTTTTGTCATTGGTCATAGTGCCACATCAGGAGGCATTCTAGACAGAGCAGTTGAAGCCGAGGACAGAAAGCACGGAGATCTCCTGAGGCTGGACCACGTTGAAGGATATCTGGAATTGTCTGCCAAGACAAAAATATATTTTGCTACTGCTGTTGCTACGTGGGATGCTGATTTTTATGTCAAAGTCGACGATGATGTCCACGTAAATATTGCAACACTAGGAGAAACACTAGTTCGACACCGAAAGAAATCGCGTTTATACATTGGATGCATGAAATCTGGTCCTGTTCTGGCACAAAAGGGAGTGAGATACCATGAACCTGAATATTGGAAATTTGGTGAACCTGGAAACAAGTATTTCCGTCATGCTACAGGACAGTTATACGCTATTTCAAAGGACTTGGCTACTTATATATCAATTAACCAGCATGTCCTCCACAAGTATGCGAATGAGGATGTCTCTTTGGGAGCTTGGTTTATTGGGCTTGATGTGGAGCATATAGATGATCGGAGACTGTGTTGTGGCACCCCACCTGATTGTGAGTGGAAGGCCCAGGCAGGCAACGTCTGTGTTGCTTCATTTGATTGGAGTTGCAGTGGAATTTGTAGGTCAGCTGAGAGGATTAAGGAAGTCCATCGACGCTGCGGGGAAGGTGAAAACGCTTTATGGAGTGCTTCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

408

Amino Acids

45.88

Weight (kDa)

8.94

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	17 - 113	5.4e-38	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	152 - 349	4e-51	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05170 AT1G05170 AT2G32430
fragaria_vesca	FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140
malus_domestica	MD09G1109300.v1.1 MD17G1097500.v1.1
prunus_persica	Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1
pyrus_communis	pycom09g03200 pycom17g09300
rosa_chinensis	RchiOBHm_Chr2g0159221
rosa_laevigata	RLG00000021144
rosa_multiflora	Rmu_sc0004528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090690
rosa_rugosa	Rorug02G0474800 Rorug02G0474900
rosa_samantha	Rh2AG541700 Rh2BG554300 Rh2CG524400 Rh2DG564100
rosa_wichuraiana	Rw2G044800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	734
AccB1I	GGYRCC	2 cut(s)	362, 1064
AccI	GTMKAC	1 cut(s)	726
AccII	CGCG	1 cut(s)	793
AciI	CCGC	1 cut(s)	1185
AcsI	RAATTY	3 cut(s)	307, 872, 1140
AcyI	GRCGYC	1 cut(s)	363
AfiI	CCNNNNNNNGG	2 cut(s)	374, 628
AgsI	TTSAA	4 cut(s)	306, 593, 641, 933
AhlI	ACTAGT	1 cut(s)	769
AjnI	CCWGG	2 cut(s)	883, 1092
AluBI	AGCT	5 cut(s)	81, 209, 326, 1010, 1154
AluI	AGCT	5 cut(s)	81, 209, 326, 1010, 1154
Alw26I	GTCTC	3 cut(s)	15, 1003, 1045
AoxI	GGCC	1 cut(s)	1089
ApeKI	GCWGC	5 cut(s)	81, 326, 329, 447, 1182
ApoI	RAATTY	3 cut(s)	307, 872, 1140
Asp700I	GAANNNNTTC	1 cut(s)	463
AspLEI	GCGC	1 cut(s)	365
AspS9I	GGNCC	3 cut(s)	631, 821, 1090
AsuHPI	GGTGA	5 cut(s)	97, 389, 506, 890, 1205
AvaII	GGWCC	2 cut(s)	631, 821
AxyI	CCTNAGG	1 cut(s)	623
BanI	GGYRCC	2 cut(s)	362, 1064
BbsI	GAAGAC	1 cut(s)	392
BbvI	GCAGC	5 cut(s)	68, 313, 316, 459, 1169
BccI	CCATC	3 cut(s)	207, 310, 1182
BciT130I	CCWGG	2 cut(s)	885, 1094
BcoDI	GTCTC	3 cut(s)	15, 1003, 1045
BcuI	ACTAGT	1 cut(s)	769
BfaI	CTAG	5 cut(s)	36, 290, 578, 758, 770
BfmI	CTRYAG	1 cut(s)	909
BfoI	RGCGCY	1 cut(s)	366
BglII	AGATCT	1 cut(s)	616
BisI	GCNGC	5 cut(s)	82, 327, 330, 448, 1183
BlsI	GCNGC	5 cut(s)	83, 328, 331, 449, 1184
Bme1390I	CCNGG	2 cut(s)	885, 1094
Bme18I	GGWCC	2 cut(s)	631, 821
BmgT120I	GGNCC	3 cut(s)	631, 821, 1090
BmiI	GGNNCC	2 cut(s)	364, 1066
BmrFI	CCNGG	2 cut(s)	885, 1094
BmsI	GCATC	4 cut(s)	223, 474, 694, 797
BpiI	GAAGAC	1 cut(s)	392
BplI	GAGNNNNNCTC	2 cut(s)	983, 1015
BpmI	CTGGAG	1 cut(s)	533
BpuEI	CTTGAG	1 cut(s)	474
BsaAI	YACGTR	3 cut(s)	356, 699, 742
BsaHI	GRCGYC	1 cut(s)	363
BsaJI	CCNNGG	2 cut(s)	597, 1092
BsaXI	ACNNNNNCTCC	4 cut(s)	1042, 1072, 1120, 1150
Bsc4I	CCNNNNNNNGG	2 cut(s)	374, 628
Bse21I	CCTNAGG	1 cut(s)	623
BseBI	CCWGG	2 cut(s)	885, 1094
BseDI	CCNNGG	2 cut(s)	597, 1092
BseGI	GGATG	6 cut(s)	120, 199, 489, 709, 812, 1000
BseLI	CCNNNNNNNGG	2 cut(s)	374, 628
BseMII	CTCAG	2 cut(s)	614, 1146
BseRI	GAGGAG	3 cut(s)	33, 182, 421
BseXI	GCAGC	5 cut(s)	68, 313, 316, 459, 1169
Bsh1236I	CGCG	1 cut(s)	793
BshFI	GGCC	1 cut(s)	1091
BshNI	GGYRCC	2 cut(s)	362, 1064
BsiSI	CCGG	1 cut(s)	451
BslI	CCNNNNNNNGG	2 cut(s)	374, 628
BsmAI	GTCTC	3 cut(s)	15, 1003, 1045
BsmI	GAATGC	2 cut(s)	102, 573
BsnI	GGCC	1 cut(s)	1091
Bsp143I	GATC	2 cut(s)	616, 1045
BspACI	CCGC	1 cut(s)	1185
BspANI	GGCC	1 cut(s)	1091
BspCNI	CTCAG	2 cut(s)	615, 1147
BspFNI	CGCG	1 cut(s)	793
BspLI	GGNNCC	2 cut(s)	364, 1066
BspQI	GCTCTTC	1 cut(s)	107
BspT107I	GGYRCC	2 cut(s)	362, 1064
BssECI	CCNNGG	2 cut(s)	597, 1092
BssMI	GATC	2 cut(s)	616, 1045
BssNI	GRCGYC	1 cut(s)	363
Bst2UI	CCWGG	2 cut(s)	885, 1094
Bst4CI	ACNGT	2 cut(s)	918, 1056
Bst6I	CTCTTC	6 cut(s)	31, 107, 159, 398, 454, 513
BstACI	GRCGYC	1 cut(s)	363
BstBAI	YACGTR	3 cut(s)	356, 699, 742
BstC8I	GCNNGC	1 cut(s)	1099
BstDEI	CTNAG	3 cut(s)	240, 623, 1155
BstENI	CCTNNNNNAGG	1 cut(s)	372
BstF5I	GGATG	6 cut(s)	120, 199, 489, 709, 812, 1000
BstFNI	CGCG	1 cut(s)	793
BstH2I	RGCGCY	1 cut(s)	366
BstHHI	GCGC	1 cut(s)	365
BstKTI	GATC	2 cut(s)	619, 1048
BstMAI	GTCTC	3 cut(s)	15, 1003, 1045
BstMBI	GATC	2 cut(s)	616, 1045
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 593
BstNI	CCWGG	2 cut(s)	885, 1094
BstNSI	RCATGY	1 cut(s)	971
BstSCI	CCNGG	2 cut(s)	883, 1092
BstSFI	CTRYAG	1 cut(s)	909
BstSNI	TACGTA	1 cut(s)	356
BstUI	CGCG	1 cut(s)	793
BstV1I	GCAGC	5 cut(s)	68, 313, 316, 459, 1169
BstV2I	GAAGAC	1 cut(s)	392
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
Bsu36I	CCTNAGG	1 cut(s)	623
BsuRI	GGCC	1 cut(s)	1091
BtsCI	GGATG	6 cut(s)	120, 199, 489, 709, 812, 1000
BtsI	GCAGTG	1 cut(s)	1141
BtsIMutI	CAGTG	1 cut(s)	1141
Cac8I	GCNNGC	1 cut(s)	1099
CfoI	GCGC	1 cut(s)	365
Cfr13I	GGNCC	3 cut(s)	631, 821, 1090
CseI	GACGC	1 cut(s)	1188
CviAII	CATG	4 cut(s)	811, 854, 905, 968
DdeI	CTNAG	3 cut(s)	240, 623, 1155
DinI	GGCGCC	1 cut(s)	364
DpnI	GATC	2 cut(s)	618, 1047
DpnII	GATC	2 cut(s)	616, 1045
DrdI	GACNNNNNNGTC	1 cut(s)	734
DseDI	GACNNNNNNGTC	1 cut(s)	734
Eam1104I	CTCTTC	6 cut(s)	31, 107, 159, 398, 454, 513
EarI	CTCTTC	6 cut(s)	31, 107, 159, 398, 454, 513
Eco105I	TACGTA	1 cut(s)	356
Eco32I	GATATC	1 cut(s)	647
Eco47I	GGWCC	2 cut(s)	631, 821
Eco81I	CCTNAGG	1 cut(s)	623
EcoNI	CCTNNNNNAGG	1 cut(s)	372
EcoRII	CCWGG	2 cut(s)	883, 1092
EcoRV	GATATC	1 cut(s)	647
EcoT22I	ATGCAT	1 cut(s)	812
EgeI	GGCGCC	1 cut(s)	364
EheI	GGCGCC	1 cut(s)	364
FaeI	CATG	4 cut(s)	814, 857, 908, 971
FatI	CATG	4 cut(s)	810, 853, 904, 967
FauI	CCCGC	1 cut(s)	1178
FblI	GTMKAC	1 cut(s)	726
Fnu4HI	GCNGC	5 cut(s)	82, 327, 330, 448, 1183
FokI	GGATG	6 cut(s)	127, 186, 496, 716, 819, 1007
Fsp4HI	GCNGC	5 cut(s)	82, 327, 330, 448, 1183
FspBI	CTAG	5 cut(s)	36, 290, 578, 758, 770
GlaI	GCGC	1 cut(s)	364
GluI	GCNGC	5 cut(s)	82, 327, 330, 448, 1183
GsuI	CTGGAG	1 cut(s)	533
HaeII	RGCGCY	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	1091
HapII	CCGG	1 cut(s)	451
HgaI	GACGC	1 cut(s)	1188
HhaI	GCGC	1 cut(s)	365
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	4 cut(s)	814, 857, 908, 971
Hin6I	GCGC	1 cut(s)	363
HinP1I	GCGC	1 cut(s)	363
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	8 cut(s)	23, 61, 268, 347, 380, 392, 429, 464
HpaII	CCGG	1 cut(s)	451
HphI	GGTGA	5 cut(s)	97, 389, 506, 890, 1205
Hpy166II	GTNNAC	3 cut(s)	727, 739, 881
Hpy188I	TCNGA	3 cut(s)	190, 219, 1050
Hpy188III	TCNNGA	6 cut(s)	36, 128, 567, 578, 622, 650
Hpy8I	GTNNAC	3 cut(s)	727, 739, 881
Hpy99I	CGWCG	2 cut(s)	731, 1182
HpyAV	CCTTC	6 cut(s)	214, 378, 517, 635, 1081, 1184
HpyCH4III	ACNGT	2 cut(s)	918, 1056
HpyCH4IV	ACGT	5 cut(s)	355, 636, 698, 741, 1104
HpyCH4V	TGCA	5 cut(s)	214, 332, 752, 810, 1134
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 593
HpyF3I	CTNAG	3 cut(s)	240, 623, 1155
HpySE526I	ACGT	5 cut(s)	355, 636, 698, 741, 1104
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	4 cut(s)	814, 857, 908, 971
HspAI	GCGC	1 cut(s)	363
KasI	GGCGCC	1 cut(s)	362
Kzo9I	GATC	2 cut(s)	616, 1045
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	2 cut(s)	1007, 1033
Lsp1109I	GCAGC	5 cut(s)	68, 313, 316, 459, 1169
LweI	GCATC	4 cut(s)	223, 474, 694, 797
MaeI	CTAG	5 cut(s)	36, 290, 578, 758, 770
MaeII	ACGT	5 cut(s)	355, 636, 698, 741, 1104
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	2 cut(s)	618, 1047
MboI	GATC	2 cut(s)	616, 1045
MboII	GAAGA	9 cut(s)	18, 21, 24, 94, 176, 397, 415, 471, 530
MflI	RGATCY	1 cut(s)	616
MluCI	AATT	8 cut(s)	45, 179, 307, 320, 653, 872, 957, 1140
Mly113I	GGCGCC	1 cut(s)	363
MlyI	GAGTC	6 cut(s)	17, 55, 262, 356, 374, 386
MmeI	TCCRAC	1 cut(s)	406
Mph1103I	ATGCAT	1 cut(s)	812
MroXI	GAANNNNTTC	1 cut(s)	463
MseI	TTAA	6 cut(s)	77, 176, 264, 416, 960, 1164
MslI	CAYNNNNRTG	3 cut(s)	55, 981, 1041
MspA1I	CMGCKG	1 cut(s)	1154
MspI	CCGG	1 cut(s)	451
MspR9I	CCNGG	2 cut(s)	885, 1094
Mva1269I	GAATGC	2 cut(s)	102, 573
MvaI	CCWGG	2 cut(s)	885, 1094
MvnI	CGCG	1 cut(s)	793
MwoI	GCNNNNNNNGC	2 cut(s)	335, 593
NarI	GGCGCC	1 cut(s)	363
NdeII	GATC	2 cut(s)	616, 1045
NlaIII	CATG	4 cut(s)	814, 857, 908, 971
NlaIV	GGNNCC	2 cut(s)	364, 1066
NmeAIII	GCCGAG	1 cut(s)	622
NmuCI	GTSAC	1 cut(s)	377
NsiI	ATGCAT	1 cut(s)	812
NspI	RCATGY	1 cut(s)	971
PciSI	GCTCTTC	1 cut(s)	107
PctI	GAATGC	2 cut(s)	102, 573
PdmI	GAANNNNTTC	1 cut(s)	463
PfeI	GAWTC	2 cut(s)	429, 464
PkrI	GCNGC	5 cut(s)	83, 328, 331, 449, 1184
PleI	GAGTC	6 cut(s)	17, 55, 262, 355, 374, 386
PluTI	GGCGCC	1 cut(s)	366
PpsI	GAGTC	6 cut(s)	17, 55, 262, 355, 374, 386
Ppu21I	YACGTR	3 cut(s)	356, 699, 742
Psp6I	CCWGG	2 cut(s)	883, 1092
PspGI	CCWGG	2 cut(s)	883, 1092
PspN4I	GGNNCC	2 cut(s)	364, 1066
PspPI	GGNCC	3 cut(s)	631, 821, 1090
PsuI	RGATCY	1 cut(s)	616
PvuII	CAGCTG	1 cut(s)	1154
RseI	CAYNNNNRTG	3 cut(s)	55, 981, 1041
SalI	GTCGAC	1 cut(s)	725
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	6 cut(s)	77, 176, 264, 416, 960, 1164
SatI	GCNGC	5 cut(s)	82, 327, 330, 448, 1183
Sau3AI	GATC	2 cut(s)	616, 1045
Sau96I	GGNCC	3 cut(s)	631, 821, 1090
SchI	GAGTC	6 cut(s)	17, 55, 262, 356, 374, 386
ScrFI	CCNGG	2 cut(s)	885, 1094
SfaNI	GCATC	4 cut(s)	223, 474, 694, 797
SfcI	CTRYAG	1 cut(s)	909
SfoI	GGCGCC	1 cut(s)	364
SinI	GGWCC	2 cut(s)	631, 821
SmiMI	CAYNNNNRTG	3 cut(s)	55, 981, 1041
SmlI	CTYRAG	1 cut(s)	489
SmoI	CTYRAG	1 cut(s)	489
SnaBI	TACGTA	1 cut(s)	356
SpeI	ACTAGT	1 cut(s)	769
Sse9I	AATT	8 cut(s)	45, 179, 307, 320, 653, 872, 957, 1140
SsiI	CCGC	1 cut(s)	1185
SspDI	GGCGCC	1 cut(s)	362
SspI	AATATT	2 cut(s)	748, 866
SspMI	CTAG	5 cut(s)	36, 290, 578, 758, 770
StyD4I	CCNGG	2 cut(s)	883, 1092
TaaI	ACNGT	2 cut(s)	918, 1056
TaiI	ACGT	5 cut(s)	358, 639, 701, 744, 1107
TaqI	TCGA	4 cut(s)	383, 726, 775, 1177
TasI	AATT	8 cut(s)	45, 179, 307, 320, 653, 872, 957, 1140
TfiI	GAWTC	2 cut(s)	429, 464
Tru1I	TTAA	6 cut(s)	77, 176, 264, 416, 960, 1164
Tru9I	TTAA	6 cut(s)	77, 176, 264, 416, 960, 1164
TscAI	CASTG	1 cut(s)	1141
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	5 cut(s)	81, 326, 329, 447, 1182
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	4 cut(s)	360, 827, 870, 1107
TspGWI	ACGGA	3 cut(s)	163, 627, 890
TspRI	CASTG	1 cut(s)	1141
VpaK11BI	GGWCC	2 cut(s)	631, 821
XagI	CCTNNNNNAGG	1 cut(s)	372
XapI	RAATTY	3 cut(s)	307, 872, 1140
XbaI	TCTAGA	2 cut(s)	35, 577
XceI	RCATGY	1 cut(s)	971
XmiI	GTMKAC	1 cut(s)	726
XmnI	GAANNNNTTC	1 cut(s)	463
XspI	CTAG	5 cut(s)	36, 290, 578, 758, 770
Zsp2I	ATGCAT	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.