Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005984

Physical Location & Seq

Genomic Coordinates Forward (+)

12378502 .. 12382409

Gene Structure 3908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00090690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGTCTTGGAAAAGCAGAGGAGACCCTTCTTCTTCTAGAAGTGTAATTTCACAGAAATGGACCCTTTTGCTTTGTTTTAGCTGCTTCTGTGCTGGAATGCTCTTCACCAATAGGATGTGGAGTGTTCCGGAAAGTAGAGGTCTAACACGGAGAACAGCTTTGGAAGAAGCGAAATTAAACTTAGTATCAGAGGGTTGCAATCCAAAAGCTTTGCATCAGAAGGAAGTAAAGCGAGAAACTAAGGACATTTTTGGAGAGGTTTATAAGACTCATAATGCTATACAGACACTAGATAAGACTATTTCAAATTTAGAGATGGAATTAGCCGCTGCAAGGGCAACACAAGAGTCTATACGTAGTGGCTCTCCTTCATCAGGTGACTTGAAGACTGACTCATCTGGGAAGAGAAGGTATTTAATGGTTGTTGGAATCAATACTGCTTTTAGCAGCCGGAAAAGAAGAGATTCAGTTCGTGCTACTTGGATGCCTCAAGGCGAGAAAAGGAAGAGACTAGAGGAAGAGAAGGGTATCATCATCCGTTTTGTCATTGGTCACAGTGCCACATCAGGAGGCATTCTAGACAGAGCAGTTGAAGCCGAGGACAGAAAGCACGGAGATCTCCTGAGGCTGGACCACGTTGAAGGATATCTGGAATTGTCTGCCAAGACAAAAATATATTTTGCTACTGCTGTTGCTCTGTGGGATGCAGATTTTTATGTCAAAGTCGACGATGATGTCCACGTAAATATTGCGACACTAGGAGAAACATTAGTTAGACACCGAAAGAAATCGCGTCTGTACATTGGATGCATGAAATCTGGTCCTGTTCTGGCACAAAAGGGAGTGAGATACCATGAACCTGAATATTGGAAATTTGGTGAACCTGGAAACAAGTATTTCCGTCATGCTACAGGACAATTATACGCAATCTCAAGAGATTTGGCTACATATATATCAATAAACCAGCATGTCCTCCACAAGTATGCGAATGAGGATGTCTCTTTGGGAGCTTGGTTTATTGGACTTGATGTGGAGCATATCGATGATAGGAGACTATGTTGTGGCACCCCACCTGTAAAGTTGTTTAACTTCCAATGCAATTTTTCGCTGCAGATTGTGAGTGGAAGGCCCAGGCAGGCAACGTCTGCGTTGCTTCATTTGATTGGAGTTGCAGTGGAATTTGTAGGTCAGCTGAGAGGATTAAGGAAGTCCATCGACGCTGCGGGGAAGGCGAAAACGCTTTATGGAGTGCTTCTTTCTAAGAAGCAGCTTGAAGCTCTTCCAATCTCAGGAAGAATTTTGGGCTTCAGTATAAAGGCAGACGGTCTTAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

445

Amino Acids

49.88

Weight (kDa)

9.59

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	17 - 113	8.6e-38	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	152 - 349	2.2e-51	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05170 AT1G05170 AT2G32430
fragaria_vesca	FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140
malus_domestica	MD09G1109300.v1.1 MD17G1097500.v1.1
prunus_persica	Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1
pyrus_communis	pycom09g03200 pycom17g09300
rosa_chinensis	RchiOBHm_Chr2g0159221
rosa_laevigata	RLG00000021144
rosa_multiflora	Rmu_sc0004528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090690
rosa_rugosa	Rorug02G0474800 Rorug02G0474900
rosa_samantha	Rh2AG541700 Rh2BG554300 Rh2CG524400 Rh2DG564100
rosa_wichuraiana	Rw2G044800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	264
AasI	GACNNNNNNGTC	1 cut(s)	734
AccB1I	GGYRCC	1 cut(s)	1064
AccI	GTMKAC	1 cut(s)	726
AccII	CGCG	1 cut(s)	793
AccIII	TCCGGA	1 cut(s)	127
AciI	CCGC	2 cut(s)	327, 1223
AcsI	RAATTY	4 cut(s)	307, 872, 1178, 1296
AcuI	CTGAAG	1 cut(s)	1291
AfaI	GTAC	1 cut(s)	800
AfiI	CCNNNNNNNGG	4 cut(s)	333, 374, 628, 1289
AflII	CTTAAG	1 cut(s)	1328
AgsI	TTSAA	5 cut(s)	306, 385, 593, 641, 1274
AjnI	CCWGG	2 cut(s)	883, 1130
AluBI	AGCT	7 cut(s)	81, 158, 209, 1010, 1192, 1270, 1277
AluI	AGCT	7 cut(s)	81, 158, 209, 1010, 1192, 1270, 1277
Alw26I	GTCTC	4 cut(s)	15, 502, 1003, 1045
Aor13HI	TCCGGA	1 cut(s)	127
AoxI	GGCC	1 cut(s)	1127
ApeKI	GCWGC	6 cut(s)	81, 329, 447, 1108, 1220, 1267
ApoI	RAATTY	4 cut(s)	307, 872, 1178, 1296
Asp700I	GAANNNNTTC	2 cut(s)	463, 1278
AspS9I	GGNCC	4 cut(s)	60, 631, 821, 1128
AsuHPI	GGTGA	3 cut(s)	97, 389, 890
AvaII	GGWCC	3 cut(s)	60, 631, 821
AxyI	CCTNAGG	1 cut(s)	623
BanI	GGYRCC	1 cut(s)	1064
BbsI	GAAGAC	1 cut(s)	392
BbvI	GCAGC	6 cut(s)	68, 316, 459, 1095, 1207, 1279
BccI	CCATC	2 cut(s)	310, 1220
BciT130I	CCWGG	2 cut(s)	885, 1132
BcoDI	GTCTC	4 cut(s)	15, 502, 1003, 1045
BfaI	CTAG	5 cut(s)	36, 290, 512, 578, 758
BfmI	CTRYAG	2 cut(s)	909, 1109
BfrI	CTTAAG	1 cut(s)	1328
BglII	AGATCT	1 cut(s)	616
BisI	GCNGC	7 cut(s)	82, 327, 330, 448, 1109, 1221, 1268
BlsI	GCNGC	7 cut(s)	83, 328, 331, 449, 1110, 1222, 1269
Bme1390I	CCNGG	2 cut(s)	885, 1132
Bme18I	GGWCC	3 cut(s)	60, 631, 821
BmgT120I	GGNCC	4 cut(s)	60, 631, 821, 1128
BmiI	GGNNCC	2 cut(s)	62, 1066
BmrFI	CCNGG	2 cut(s)	885, 1132
BmsI	GCATC	4 cut(s)	223, 474, 694, 797
BpiI	GAAGAC	1 cut(s)	392
BplI	GAGNNNNNCTC	2 cut(s)	983, 1015
BpuEI	CTTGAG	2 cut(s)	474, 916
Bsa29I	ATCGAT	1 cut(s)	1041
BsaAI	YACGTR	2 cut(s)	356, 742
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	597, 1130
BsaWI	WCCGGW	1 cut(s)	127
BsaXI	ACNNNNNCTCC	4 cut(s)	1042, 1072, 1158, 1188
Bsc4I	CCNNNNNNNGG	4 cut(s)	333, 374, 628, 1289
Bse21I	CCTNAGG	1 cut(s)	623
BseAI	TCCGGA	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	885, 1132
BseCI	ATCGAT	1 cut(s)	1041
BseDI	CCNNGG	2 cut(s)	597, 1130
BseGI	GGATG	6 cut(s)	120, 489, 534, 709, 812, 1000
BseLI	CCNNNNNNNGG	4 cut(s)	333, 374, 628, 1289
BseMII	CTCAG	3 cut(s)	614, 1184, 1302
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	6 cut(s)	68, 316, 459, 1095, 1207, 1279
Bsh1236I	CGCG	1 cut(s)	793
BshFI	GGCC	1 cut(s)	1129
BshNI	GGYRCC	1 cut(s)	1064
BshVI	ATCGAT	1 cut(s)	1041
BsiSI	CCGG	2 cut(s)	128, 451
BslI	CCNNNNNNNGG	4 cut(s)	333, 374, 628, 1289
BsmAI	GTCTC	4 cut(s)	15, 502, 1003, 1045
BsmI	GAATGC	2 cut(s)	102, 573
BsnI	GGCC	1 cut(s)	1129
Bso31I	GGTCTC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	127
Bsp1407I	TGTACA	1 cut(s)	798
Bsp143I	GATC	1 cut(s)	616
BspACI	CCGC	2 cut(s)	327, 1223
BspANI	GGCC	1 cut(s)	1129
BspCNI	CTCAG	3 cut(s)	615, 1185, 1301
BspDI	ATCGAT	1 cut(s)	1041
BspEI	TCCGGA	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	793
BspLI	GGNNCC	2 cut(s)	62, 1066
BspMAI	CTGCAG	1 cut(s)	1113
BspQI	GCTCTTC	2 cut(s)	107, 1284
BspT107I	GGYRCC	1 cut(s)	1064
BspTI	CTTAAG	1 cut(s)	1328
BspTNI	GGTCTC	1 cut(s)	15
BsrGI	TGTACA	1 cut(s)	798
BssECI	CCNNGG	2 cut(s)	597, 1130
BssMI	GATC	1 cut(s)	616
Bst2UI	CCWGG	2 cut(s)	885, 1132
Bst4CI	ACNGT	2 cut(s)	557, 1325
Bst6I	CTCTTC	6 cut(s)	107, 398, 454, 500, 513, 1284
BstAFI	CTTAAG	1 cut(s)	1328
BstAPI	GCANNNNNTGC	1 cut(s)	1145
BstAUI	TGTACA	1 cut(s)	798
BstBAI	YACGTR	2 cut(s)	356, 742
BstC8I	GCNNGC	1 cut(s)	1137
BstDEI	CTNAG	6 cut(s)	181, 240, 623, 1193, 1260, 1288
BstENI	CCTNNNNNAGG	1 cut(s)	372
BstF5I	GGATG	6 cut(s)	120, 489, 534, 709, 812, 1000
BstFNI	CGCG	1 cut(s)	793
BstKTI	GATC	1 cut(s)	619
BstMAI	GTCTC	4 cut(s)	15, 502, 1003, 1045
BstMBI	GATC	1 cut(s)	616
BstMWI	GCNNNNNNNGC	4 cut(s)	335, 593, 1145, 1229
BstNI	CCWGG	2 cut(s)	885, 1132
BstNSI	RCATGY	1 cut(s)	971
BstSCI	CCNGG	2 cut(s)	883, 1130
BstSFI	CTRYAG	2 cut(s)	909, 1109
BstSNI	TACGTA	1 cut(s)	356
BstUI	CGCG	1 cut(s)	793
BstV1I	GCAGC	6 cut(s)	68, 316, 459, 1095, 1207, 1279
BstV2I	GAAGAC	1 cut(s)	392
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
Bsu15I	ATCGAT	1 cut(s)	1041
Bsu36I	CCTNAGG	1 cut(s)	623
BsuRI	GGCC	1 cut(s)	1129
BsuTUI	ATCGAT	1 cut(s)	1041
BtsCI	GGATG	6 cut(s)	120, 489, 534, 709, 812, 1000
BtsI	GCAGTG	1 cut(s)	1179
BtsIMutI	CAGTG	2 cut(s)	562, 1179
Cac8I	GCNNGC	1 cut(s)	1137
Cfr13I	GGNCC	4 cut(s)	60, 631, 821, 1128
ClaI	ATCGAT	1 cut(s)	1041
CseI	GACGC	2 cut(s)	782, 1226
Csp6I	GTAC	1 cut(s)	799
CviAII	CATG	4 cut(s)	811, 854, 905, 968
CviQI	GTAC	1 cut(s)	799
DdeI	CTNAG	6 cut(s)	181, 240, 623, 1193, 1260, 1288
DpnI	GATC	1 cut(s)	618
DpnII	GATC	1 cut(s)	616
DrdI	GACNNNNNNGTC	1 cut(s)	734
DseDI	GACNNNNNNGTC	1 cut(s)	734
Eam1104I	CTCTTC	6 cut(s)	107, 398, 454, 500, 513, 1284
EarI	CTCTTC	6 cut(s)	107, 398, 454, 500, 513, 1284
Eco105I	TACGTA	1 cut(s)	356
Eco31I	GGTCTC	1 cut(s)	15
Eco32I	GATATC	1 cut(s)	647
Eco47I	GGWCC	3 cut(s)	60, 631, 821
Eco57I	CTGAAG	1 cut(s)	1291
Eco81I	CCTNAGG	1 cut(s)	623
EcoNI	CCTNNNNNAGG	1 cut(s)	372
EcoRII	CCWGG	2 cut(s)	883, 1130
EcoRV	GATATC	1 cut(s)	647
EcoT22I	ATGCAT	1 cut(s)	812
FaeI	CATG	4 cut(s)	814, 857, 908, 971
FatI	CATG	4 cut(s)	810, 853, 904, 967
FauI	CCCGC	1 cut(s)	1216
FblI	GTMKAC	1 cut(s)	726
Fnu4HI	GCNGC	7 cut(s)	82, 327, 330, 448, 1109, 1221, 1268
FokI	GGATG	6 cut(s)	127, 496, 521, 716, 819, 1007
Fsp4HI	GCNGC	7 cut(s)	82, 327, 330, 448, 1109, 1221, 1268
FspBI	CTAG	5 cut(s)	36, 290, 512, 578, 758
GluI	GCNGC	7 cut(s)	82, 327, 330, 448, 1109, 1221, 1268
HaeIII	GGCC	1 cut(s)	1129
HapII	CCGG	2 cut(s)	128, 451
HgaI	GACGC	2 cut(s)	782, 1226
Hin1II	CATG	4 cut(s)	814, 857, 908, 971
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	5 cut(s)	268, 347, 392, 429, 464
HpaII	CCGG	2 cut(s)	128, 451
HphI	GGTGA	3 cut(s)	97, 389, 890
Hpy166II	GTNNAC	3 cut(s)	727, 739, 881
Hpy188I	TCNGA	2 cut(s)	190, 219
Hpy188III	TCNNGA	8 cut(s)	36, 128, 567, 578, 622, 650, 933, 1290
Hpy8I	GTNNAC	3 cut(s)	727, 739, 881
Hpy99I	CGWCG	2 cut(s)	731, 1220
HpyAV	CCTTC	8 cut(s)	36, 214, 378, 402, 517, 635, 1119, 1222
HpyCH4III	ACNGT	2 cut(s)	557, 1325
HpyCH4IV	ACGT	4 cut(s)	355, 636, 741, 1142
HpyCH4V	TGCA	8 cut(s)	198, 214, 332, 707, 810, 1098, 1111, 1172
HpyF10VI	GCNNNNNNNGC	4 cut(s)	335, 593, 1145, 1229
HpyF3I	CTNAG	6 cut(s)	181, 240, 623, 1193, 1260, 1288
HpySE526I	ACGT	4 cut(s)	355, 636, 741, 1142
Hsp92II	CATG	4 cut(s)	814, 857, 908, 971
Kpn2I	TCCGGA	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	616
LguI	GCTCTTC	2 cut(s)	107, 1284
LmnI	GCTCC	2 cut(s)	1007, 1033
Lsp1109I	GCAGC	6 cut(s)	68, 316, 459, 1095, 1207, 1279
LweI	GCATC	4 cut(s)	223, 474, 694, 797
MaeI	CTAG	5 cut(s)	36, 290, 512, 578, 758
MaeII	ACGT	4 cut(s)	355, 636, 741, 1142
MaeIII	GTNAC	2 cut(s)	377, 551
MalI	GATC	1 cut(s)	618
MboI	GATC	1 cut(s)	616
MflI	RGATCY	1 cut(s)	616
MlyI	GAGTC	3 cut(s)	262, 356, 386
MmeI	TCCRAC	1 cut(s)	406
Mph1103I	ATGCAT	1 cut(s)	812
MroI	TCCGGA	1 cut(s)	127
MroXI	GAANNNNTTC	2 cut(s)	463, 1278
MseI	TTAA	5 cut(s)	176, 416, 1086, 1202, 1329
MslI	CAYNNNNRTG	3 cut(s)	55, 981, 1041
MspA1I	CMGCKG	2 cut(s)	329, 1192
MspCI	CTTAAG	1 cut(s)	1328
MspI	CCGG	2 cut(s)	128, 451
MspR9I	CCNGG	2 cut(s)	885, 1132
Mva1269I	GAATGC	2 cut(s)	102, 573
MvaI	CCWGG	2 cut(s)	885, 1132
MvnI	CGCG	1 cut(s)	793
MwoI	GCNNNNNNNGC	4 cut(s)	335, 593, 1145, 1229
NdeII	GATC	1 cut(s)	616
NlaIII	CATG	4 cut(s)	814, 857, 908, 971
NlaIV	GGNNCC	2 cut(s)	62, 1066
NmeAIII	GCCGAG	1 cut(s)	622
NmuCI	GTSAC	2 cut(s)	377, 551
NsiI	ATGCAT	1 cut(s)	812
NspI	RCATGY	1 cut(s)	971
PciSI	GCTCTTC	2 cut(s)	107, 1284
PctI	GAATGC	2 cut(s)	102, 573
PdmI	GAANNNNTTC	2 cut(s)	463, 1278
PfeI	GAWTC	2 cut(s)	429, 464
PkrI	GCNGC	7 cut(s)	83, 328, 331, 449, 1110, 1222, 1269
PleI	GAGTC	3 cut(s)	262, 355, 386
PpsI	GAGTC	3 cut(s)	262, 355, 386
Ppu21I	YACGTR	2 cut(s)	356, 742
PsiI	TTATAA	1 cut(s)	264
Psp6I	CCWGG	2 cut(s)	883, 1130
PspGI	CCWGG	2 cut(s)	883, 1130
PspN4I	GGNNCC	2 cut(s)	62, 1066
PspPI	GGNCC	4 cut(s)	60, 631, 821, 1128
PstI	CTGCAG	1 cut(s)	1113
PsuI	RGATCY	1 cut(s)	616
PvuII	CAGCTG	1 cut(s)	1192
RsaI	GTAC	1 cut(s)	800
RsaNI	GTAC	1 cut(s)	799
RseI	CAYNNNNRTG	3 cut(s)	55, 981, 1041
SalI	GTCGAC	1 cut(s)	725
SapI	GCTCTTC	2 cut(s)	107, 1284
SaqAI	TTAA	5 cut(s)	176, 416, 1086, 1202, 1329
SatI	GCNGC	7 cut(s)	82, 327, 330, 448, 1109, 1221, 1268
Sau3AI	GATC	1 cut(s)	616
Sau96I	GGNCC	4 cut(s)	60, 631, 821, 1128
SchI	GAGTC	3 cut(s)	262, 356, 386
ScrFI	CCNGG	2 cut(s)	885, 1132
SfaNI	GCATC	4 cut(s)	223, 474, 694, 797
SfcI	CTRYAG	2 cut(s)	909, 1109
SinI	GGWCC	3 cut(s)	60, 631, 821
SmiMI	CAYNNNNRTG	3 cut(s)	55, 981, 1041
SmlI	CTYRAG	3 cut(s)	489, 931, 1328
SmoI	CTYRAG	3 cut(s)	489, 931, 1328
SnaBI	TACGTA	1 cut(s)	356
SsiI	CCGC	2 cut(s)	327, 1223
SspI	AATATT	2 cut(s)	748, 866
SspMI	CTAG	5 cut(s)	36, 290, 512, 578, 758
StyD4I	CCNGG	2 cut(s)	883, 1130
TaaI	ACNGT	2 cut(s)	557, 1325
TaiI	ACGT	4 cut(s)	358, 639, 744, 1145
TaqI	TCGA	3 cut(s)	726, 1041, 1215
TatI	WGTACW	1 cut(s)	798
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	2 cut(s)	429, 464
Tru1I	TTAA	5 cut(s)	176, 416, 1086, 1202, 1329
Tru9I	TTAA	5 cut(s)	176, 416, 1086, 1202, 1329
TscAI	CASTG	2 cut(s)	562, 1179
TseFI	GTSAC	2 cut(s)	377, 551
TseI	GCWGC	6 cut(s)	81, 329, 447, 1108, 1220, 1267
Tsp45I	GTSAC	2 cut(s)	377, 551
TspDTI	ATGAA	4 cut(s)	360, 827, 870, 1145
TspGWI	ACGGA	4 cut(s)	163, 527, 627, 890
TspRI	CASTG	2 cut(s)	562, 1179
Vha464I	CTTAAG	1 cut(s)	1328
VpaK11BI	GGWCC	3 cut(s)	60, 631, 821
XagI	CCTNNNNNAGG	1 cut(s)	372
XapI	RAATTY	4 cut(s)	307, 872, 1178, 1296
XbaI	TCTAGA	2 cut(s)	35, 577
XceI	RCATGY	1 cut(s)	971
XmiI	GTMKAC	1 cut(s)	726
XmnI	GAANNNNTTC	2 cut(s)	463, 1278
XspI	CTAG	5 cut(s)	36, 290, 512, 578, 758
Zsp2I	ATGCAT	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.