Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005984

Physical Location & Seq

Genomic Coordinates Forward (+)

60624088 .. 60626254

Gene Structure 2167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0474900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTCTTCTTGTAAGCTCTCAATAACGGTGCTTTTTCTCACGTTGTTCATGATGGCCGGCATAGCTGCCTCAGCTAATTTCTGGGAAGACTTTGAACAAACATACGGCGACCAGCGTCTTCAATTACTTGATGGAGGGAAACATTTCACACTCAGCCAGGACGCGAATTCTGGGGCGGGATTCAAATCCAAGAACGAATACCTATTTGGACGTTTCGACATGGATATGAAGCTCGCTCCTGGGAACTCAGCTGGTACTGTCACCACATTTTATTTATCTTCTCCTCAAGGGCACGAACACGATGAGATAGACATAGAGTTTTTGGGCAACTCTTCTGGGAGTCCGTACACTCTCCATACCAATGTGTTCAGTAAGGGTAAAGGAAATAAAGAACAACAATTTCATCTTTGGTTTGATCCCACACAAGATTTTCACAACTATACAATTATCTGGAACCCCCATCGTATTATATGGATGGTGGATAACAGTCCCATTAGGATTTTCAGCAACGTCGAAGCATCACTTGGTGTTCCATATCCTCATAGCAAACCGATGAGGATTTACTGCAGCTTCTGGAATGCCGATGACTGGGCTACACAAGGTGGAAAAGTAAAGGCCGACTGGTCTCAAGGTTCTAAAACAGTCTCTTACAAAGACCACAAGATCAATGCTTGTCTTCCTTGGGATCAGGGCTGTGCTTCGAACACAGCCGGAAATTCATGGCAGAATATTGATCTTGGTCGTTTAGGTCATGATAGGCTTCGATGGGTACAAGAGAAGTACAGGGTCAGCAACTACTGTGACCCCAGTAAATCTCCCCAAGGTGGCCCGCCACGCGAGTGTATGCACTCCGAGTTTCAGAGCCCCCCAAATCCCAACCCTGCAAATCCCGGCGCTCCCAACATTCCCGACCTTAAAAATCCCGGCAACAAACCCAAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

314

Amino Acids

35.32

Weight (kDa)

6.59

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	29 - 209	1.3e-63	Glycosyl hydrolases family 16
XET_C	PF06955	238 - 281	7.9e-06	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05170 AT1G05170 AT2G32430
fragaria_vesca	FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140
malus_domestica	MD09G1109300.v1.1 MD17G1097500.v1.1
prunus_persica	Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1
pyrus_communis	pycom09g03200 pycom17g09300
rosa_chinensis	RchiOBHm_Chr2g0159221
rosa_laevigata	RLG00000021144
rosa_multiflora	Rmu_sc0004528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090690
rosa_rugosa	Rorug02G0474800 Rorug02G0474900
rosa_samantha	Rh2AG541700 Rh2BG554300 Rh2CG524400 Rh2DG564100
rosa_wichuraiana	Rw2G044800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	164, 837
AciI	CCGC	2 cut(s)	176, 830
AclWI	GGATC	2 cut(s)	410, 693
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	2 cut(s)	166, 715
AdeI	CACNNNGTG	2 cut(s)	527, 602
AfaI	GTAC	4 cut(s)	256, 347, 771, 782
AfiI	CCNNNNNNNGG	2 cut(s)	588, 824
AgsI	TTSAA	3 cut(s)	95, 122, 184
AjnI	CCWGG	2 cut(s)	156, 238
AjuI	GAANNNNNNNTTGG	4 cut(s)	189, 221, 507, 539
AleI	CACNNNNGTG	1 cut(s)	838
AluBI	AGCT	6 cut(s)	16, 65, 74, 232, 251, 570
AluI	AGCT	6 cut(s)	16, 65, 74, 232, 251, 570
Alw26I	GTCTC	2 cut(s)	630, 649
AlwI	GGATC	2 cut(s)	410, 693
AlwNI	CAGNNNCTG	1 cut(s)	573
AoxI	GGCC	3 cut(s)	54, 615, 826
ApeKI	GCWGC	2 cut(s)	65, 567
ApoI	RAATTY	2 cut(s)	166, 715
Asp700I	GAANNNNTTC	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	896
AspS9I	GGNCC	1 cut(s)	827
AsuC2I	CCSGG	2 cut(s)	891, 924
AsuHPI	GGTGA	1 cut(s)	253
AsuII	TTCGAA	1 cut(s)	701
BaeGI	GKGCMC	1 cut(s)	294
BanII	GRGCYC	1 cut(s)	866
BbsI	GAAGAC	3 cut(s)	93, 110, 668
BbvCI	CCTCAGC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	52, 579
BccI	CCATC	5 cut(s)	46, 125, 468, 469, 759
BceAI	ACGGC	1 cut(s)	121
BciT130I	CCWGG	2 cut(s)	158, 240
BcnI	CCSGG	2 cut(s)	891, 924
BcoDI	GTCTC	2 cut(s)	630, 649
BfaI	CTAG	1 cut(s)	943
BfmI	CTRYAG	1 cut(s)	565
BfoI	RGCGCY	1 cut(s)	897
BisI	GCNGC	2 cut(s)	66, 568
BlsI	GCNGC	2 cut(s)	67, 569
Bme1390I	CCNGG	4 cut(s)	158, 240, 891, 924
BmgT120I	GGNCC	1 cut(s)	827
BmiI	GGNNCC	1 cut(s)	455
BmrFI	CCNGG	4 cut(s)	158, 240, 891, 924
BmrI	ACTGGG	2 cut(s)	598, 801
BmsI	GCATC	1 cut(s)	527
BmuI	ACTGGG	2 cut(s)	598, 801
BoxI	GACNNNNGTC	1 cut(s)	114
BpiI	GAAGAC	3 cut(s)	93, 110, 668
Bpu10I	CCTNAGC	1 cut(s)	70
Bpu14I	TTCGAA	1 cut(s)	701
BpuEI	CTTGAG	2 cut(s)	270, 612
BpuMI	CCSGG	2 cut(s)	891, 924
BsaBI	GATNNNNATC	1 cut(s)	184
BsaI	GGTCTC	1 cut(s)	630
BsaJI	CCNNGG	3 cut(s)	239, 680, 820
Bsc4I	CCNNNNNNNGG	2 cut(s)	588, 824
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	3 cut(s)	593, 626, 807
Bse8I	GATNNNNATC	1 cut(s)	184
BseBI	CCWGG	2 cut(s)	158, 240
BseDI	CCNNGG	3 cut(s)	239, 680, 820
BseGI	GGATG	1 cut(s)	480
BseJI	GATNNNNATC	1 cut(s)	184
BseLI	CCNNNNNNNGG	2 cut(s)	588, 824
BseMII	CTCAG	3 cut(s)	84, 166, 261
BseNI	ACTGG	3 cut(s)	593, 626, 807
BseRI	GAGGAG	1 cut(s)	273
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	52, 579
Bsh1236I	CGCG	2 cut(s)	164, 837
BshFI	GGCC	3 cut(s)	56, 617, 828
BsiSI	CCGG	4 cut(s)	57, 711, 891, 924
BslFI	GGGAC	1 cut(s)	474
BslI	CCNNNNNNNGG	2 cut(s)	588, 824
BsmAI	GTCTC	2 cut(s)	630, 649
BsmFI	GGGAC	1 cut(s)	474
BsmI	GAATGC	1 cut(s)	583
BsnI	GGCC	3 cut(s)	56, 617, 828
Bso31I	GGTCTC	1 cut(s)	630
Bsp119I	TTCGAA	1 cut(s)	701
Bsp1286I	GDGCHC	2 cut(s)	294, 866
Bsp143I	GATC	4 cut(s)	415, 663, 685, 733
BspACI	CCGC	2 cut(s)	176, 830
BspANI	GGCC	3 cut(s)	56, 617, 828
BspCNI	CTCAG	3 cut(s)	83, 165, 260
BspFNI	CGCG	2 cut(s)	164, 837
BspHI	TCATGA	2 cut(s)	48, 751
BspLI	GGNNCC	1 cut(s)	455
BspMAI	CTGCAG	1 cut(s)	569
BspPI	GGATC	2 cut(s)	410, 693
BspT104I	TTCGAA	1 cut(s)	701
BspTNI	GGTCTC	1 cut(s)	630
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	3 cut(s)	593, 626, 807
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	3 cut(s)	239, 680, 820
BssMI	GATC	4 cut(s)	415, 663, 685, 733
BssT1I	CCWWGG	2 cut(s)	680, 820
Bst2UI	CCWGG	2 cut(s)	158, 240
Bst4CI	ACNGT	5 cut(s)	28, 259, 488, 643, 800
Bst6I	CTCTTC	1 cut(s)	337
BstBI	TTCGAA	1 cut(s)	701
BstC8I	GCNNGC	3 cut(s)	58, 234, 830
BstDEI	CTNAG	3 cut(s)	70, 152, 247
BstF5I	GGATG	1 cut(s)	480
BstFNI	CGCG	2 cut(s)	164, 837
BstH2I	RGCGCY	1 cut(s)	897
BstHHI	GCGC	1 cut(s)	896
BstKTI	GATC	4 cut(s)	418, 666, 688, 736
BstMAI	GTCTC	2 cut(s)	630, 649
BstMBI	GATC	4 cut(s)	415, 663, 685, 733
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 71, 834
BstNI	CCWGG	2 cut(s)	158, 240
BstPAI	GACNNNNGTC	1 cut(s)	114
BstSCI	CCNGG	4 cut(s)	156, 238, 889, 922
BstSFI	CTRYAG	1 cut(s)	565
BstSLI	GKGCMC	1 cut(s)	294
BstUI	CGCG	2 cut(s)	164, 837
BstV1I	GCAGC	2 cut(s)	52, 579
BstV2I	GAAGAC	3 cut(s)	93, 110, 668
BsuRI	GGCC	3 cut(s)	56, 617, 828
BtsCI	GGATG	1 cut(s)	480
Cac8I	GCNNGC	3 cut(s)	58, 234, 830
CaiI	CAGNNNCTG	1 cut(s)	573
CciI	TCATGA	2 cut(s)	48, 751
CfoI	GCGC	1 cut(s)	896
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	827
CseI	GACGC	2 cut(s)	104, 170
Csp6I	GTAC	4 cut(s)	255, 346, 770, 781
CviAII	CATG	4 cut(s)	49, 220, 720, 752
CviQI	GTAC	4 cut(s)	255, 346, 770, 781
DdeI	CTNAG	3 cut(s)	70, 152, 247
DpnI	GATC	4 cut(s)	417, 665, 687, 735
DpnII	GATC	4 cut(s)	415, 663, 685, 733
DraIII	CACNNNGTG	2 cut(s)	527, 602
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	337
EarI	CTCTTC	1 cut(s)	337
Eco130I	CCWWGG	2 cut(s)	680, 820
Eco24I	GRGCYC	1 cut(s)	866
Eco31I	GGTCTC	1 cut(s)	630
EcoRI	GAATTC	1 cut(s)	166
EcoRII	CCWGG	2 cut(s)	156, 238
EcoT14I	CCWWGG	2 cut(s)	680, 820
EcoT38I	GRGCYC	1 cut(s)	866
ErhI	CCWWGG	2 cut(s)	680, 820
FaeI	CATG	4 cut(s)	52, 223, 723, 755
FalI	AAGNNNNNCTT	2 cut(s)	507, 539
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	4 cut(s)	48, 219, 719, 751
FauI	CCCGC	2 cut(s)	169, 837
Fnu4HI	GCNGC	2 cut(s)	66, 568
FokI	GGATG	1 cut(s)	487
FriOI	GRGCYC	1 cut(s)	866
Fsp4HI	GCNGC	2 cut(s)	66, 568
FspBI	CTAG	1 cut(s)	943
GlaI	GCGC	1 cut(s)	895
GluI	GCNGC	2 cut(s)	66, 568
HaeII	RGCGCY	1 cut(s)	897
HaeIII	GGCC	3 cut(s)	56, 617, 828
HapII	CCGG	4 cut(s)	57, 711, 891, 924
HgaI	GACGC	2 cut(s)	104, 170
HhaI	GCGC	1 cut(s)	896
Hin1II	CATG	4 cut(s)	52, 223, 723, 755
Hin6I	GCGC	1 cut(s)	894
HinP1I	GCGC	1 cut(s)	894
HinfI	GANTC	2 cut(s)	180, 340
HpaII	CCGG	4 cut(s)	57, 711, 891, 924
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	2 cut(s)	853, 861
Hpy188III	TCNNGA	5 cut(s)	49, 451, 574, 752, 908
Hpy8I	GTNNAC	1 cut(s)	348
Hpy99I	CGWCG	1 cut(s)	515
HpyCH4III	ACNGT	5 cut(s)	28, 259, 488, 643, 800
HpyCH4IV	ACGT	3 cut(s)	41, 211, 510
HpyCH4V	TGCA	3 cut(s)	567, 847, 884
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 71, 834
HpyF3I	CTNAG	3 cut(s)	70, 152, 247
HpySE526I	ACGT	3 cut(s)	41, 211, 510
Hsp92II	CATG	4 cut(s)	52, 223, 723, 755
HspAI	GCGC	1 cut(s)	894
KroI	GCCGGC	1 cut(s)	56
KroNI	GCCGGC	1 cut(s)	58
Kzo9I	GATC	4 cut(s)	415, 663, 685, 733
LmnI	GCTCC	2 cut(s)	241, 901
Lsp1109I	GCAGC	2 cut(s)	52, 579
LweI	GCATC	1 cut(s)	527
MaeI	CTAG	1 cut(s)	943
MaeII	ACGT	3 cut(s)	41, 211, 510
MaeIII	GTNAC	2 cut(s)	259, 800
MalI	GATC	4 cut(s)	417, 665, 687, 735
MboI	GATC	4 cut(s)	415, 663, 685, 733
MboII	GAAGA	5 cut(s)	98, 110, 270, 324, 668
MhlI	GDGCHC	2 cut(s)	294, 866
MluCI	AATT	6 cut(s)	76, 122, 166, 398, 444, 715
MlyI	GAGTC	1 cut(s)	349
MnlI	CCTC	5 cut(s)	79, 128, 294, 549, 549
MroNI	GCCGGC	1 cut(s)	56
MroXI	GAANNNNTTC	1 cut(s)	143
MseI	TTAA	1 cut(s)	915
MslI	CAYNNNNRTG	3 cut(s)	224, 360, 838
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	4 cut(s)	57, 711, 891, 924
MspR9I	CCNGG	4 cut(s)	158, 240, 891, 924
Mva1269I	GAATGC	1 cut(s)	583
MvaI	CCWGG	2 cut(s)	158, 240
MvnI	CGCG	2 cut(s)	164, 837
MwoI	GCNNNNNNNGC	3 cut(s)	62, 71, 834
NaeI	GCCGGC	1 cut(s)	58
NciI	CCSGG	2 cut(s)	891, 924
NdeII	GATC	4 cut(s)	415, 663, 685, 733
NgoMIV	GCCGGC	1 cut(s)	56
NlaIII	CATG	4 cut(s)	52, 223, 723, 755
NlaIV	GGNNCC	1 cut(s)	455
NmuCI	GTSAC	2 cut(s)	259, 800
NspV	TTCGAA	1 cut(s)	701
OliI	CACNNNNGTG	1 cut(s)	838
PagI	TCATGA	2 cut(s)	48, 751
PctI	GAATGC	1 cut(s)	583
PdiI	GCCGGC	1 cut(s)	58
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	180
PkrI	GCNGC	2 cut(s)	67, 569
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
PshAI	GACNNNNGTC	1 cut(s)	114
Psp6I	CCWGG	2 cut(s)	156, 238
PspGI	CCWGG	2 cut(s)	156, 238
PspN4I	GGNNCC	1 cut(s)	455
PspPI	GGNCC	1 cut(s)	827
PstI	CTGCAG	1 cut(s)	569
PstNI	CAGNNNCTG	1 cut(s)	573
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	4 cut(s)	256, 347, 771, 782
RsaNI	GTAC	4 cut(s)	255, 346, 770, 781
RseI	CAYNNNNRTG	3 cut(s)	224, 360, 838
SaqAI	TTAA	1 cut(s)	915
SatI	GCNGC	2 cut(s)	66, 568
Sau3AI	GATC	4 cut(s)	415, 663, 685, 733
Sau96I	GGNCC	1 cut(s)	827
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	4 cut(s)	158, 240, 891, 924
SduI	GDGCHC	2 cut(s)	294, 866
SfaNI	GCATC	1 cut(s)	527
SfcI	CTRYAG	1 cut(s)	565
SfuI	TTCGAA	1 cut(s)	701
SmiMI	CAYNNNNRTG	3 cut(s)	224, 360, 838
SmlI	CTYRAG	2 cut(s)	285, 627
SmoI	CTYRAG	2 cut(s)	285, 627
Sse9I	AATT	6 cut(s)	76, 122, 166, 398, 444, 715
SsiI	CCGC	2 cut(s)	176, 830
SspI	AATATT	1 cut(s)	730
SspMI	CTAG	1 cut(s)	943
StyD4I	CCNGG	4 cut(s)	156, 238, 889, 922
StyI	CCWWGG	2 cut(s)	680, 820
TaaI	ACNGT	5 cut(s)	28, 259, 488, 643, 800
TaiI	ACGT	3 cut(s)	44, 214, 513
TaqI	TCGA	4 cut(s)	216, 513, 701, 763
TasI	AATT	6 cut(s)	76, 122, 166, 398, 444, 715
TatI	WGTACW	1 cut(s)	780
TfiI	GAWTC	1 cut(s)	180
Tru1I	TTAA	1 cut(s)	915
Tru9I	TTAA	1 cut(s)	915
TseFI	GTSAC	2 cut(s)	259, 800
TseI	GCWGC	2 cut(s)	65, 567
Tsp45I	GTSAC	2 cut(s)	259, 800
TspDTI	ATGAA	4 cut(s)	37, 242, 392, 708
TspGWI	ACGGA	1 cut(s)	333
XapI	RAATTY	2 cut(s)	166, 715
XmnI	GAANNNNTTC	1 cut(s)	143
XspI	CTAG	1 cut(s)	943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.