Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005984

Physical Location & Seq

Genomic Coordinates Forward (+)

7059570 .. 7062773

Gene Structure 3204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g09300.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGTCTTGGAGAAGCAGAGGAGACCCATCTGCTTCTAGAAGTTTTATTTCTCAGAAATGGACCCTTTTTCTTTGTTTAAGCTGCTTCTGTGCTGGAATGTTCTTCACCAATAGAATGTGGACTATTCCAGAAAGTAAAGGTATCACAAGGAGAACAGCTATGGAAGAAGAAACATTAAATTTAGTTTCCGAGGGTTGCAATCCGAAATCGAAGGAGGTAAAGCGCGAAAATAAGGACATCTTTGGGGAGGTTTATAAGACTCATAATGCTATACAGACATTAGATAAGACTATTTCAAATTTAGAGATGGAATTAGCTGCAGCAAGGGCAACACAGGAGTCAATACGTAGTGGCTCTCCATTATCAGGAGACTCGAAGACTGATTCAACTGGGAAGAGAAGGTATCTGATGGTTGTTGGAGTTAATACTGCTTTTAGCAGCCGGAAAAGACGAGATTCAGTTCGTGCTACGTGGATGCCACAAGGCGAGAAACGAAAGAGGCTGGAGGAAGAGAAGGGTATTATCATTCGCTTTGTCATTGGTCATAGTGCCACGTCAGGAGGTATTCTAGACAGAGCTGTTGAAGCAGAGGGCAGAAAGCATGGTGATATCCTGAGGCTGGACCATGTTGAAGGGTACCTCGAACTGTCGGCCAAGACAAAGATATATTTTGCTACCGCTGTTGCTACTTGGGATGCAGATTTTTATGTCAAAGTTGATGATGATGTTCACGTAAATATTGCGACACTAGGAGAAACACTAGTCAGACACCGAAAGAAACAGCACCTCTACATTGGATGCATGAAATCTGGTCCTGTTCTAGCACAAAAGGGAGTGAGATACCATGAACCCGAGTATTGGAAAGTTGGTGAACCAGGAAACAAGTACTTCCGTCATGCTACAGGACAGCTGTATGCTATATCAAAAGATTTGGCTACGTATATATCAATAAACCAGCATGTCCTACACAAGTACGCTAACGAGGATGTCTCACTGGGAGCTTGGTTTATTGGACTCGATGTGCAGCATATTGATGACCGGAGACTATGTTGCGGCACCCCACCCGATTGTGAGTGGAAGGCTCAGGCAGGCAACATCTGTGTTGCTTCATTTGATTGGACCTGCAGTGGGATTTGTAAGTCAGCCGAGAGAATCAAGGAAGTCCACCGCCGGTGTGGGGAAGGCGAAAACGCCTTGTGGAGTGCTACTTTCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

406

Amino Acids

45.75

Weight (kDa)

8.94

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05170 AT1G05170 AT2G32430
fragaria_vesca	FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140
malus_domestica	MD09G1109300.v1.1 MD17G1097500.v1.1
prunus_persica	Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1
pyrus_communis	pycom09g03200 pycom17g09300
rosa_chinensis	RchiOBHm_Chr2g0159221
rosa_laevigata	RLG00000021144
rosa_multiflora	Rmu_sc0004528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090690
rosa_rugosa	Rorug02G0474800 Rorug02G0474900
rosa_samantha	Rh2AG541700 Rh2BG554300 Rh2CG524400 Rh2DG564100
rosa_wichuraiana	Rw2G044800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	1130
Acc65I	GGTACC	1 cut(s)	636
AccB1I	GGYRCC	2 cut(s)	636, 1055
AccII	CGCG	1 cut(s)	225
AciI	CCGC	3 cut(s)	678, 1053, 1168
AcoI	YGGCCR	1 cut(s)	651
AcsI	RAATTY	2 cut(s)	178, 298
AfaI	GTAC	3 cut(s)	638, 887, 974
AfiI	CCNNNNNNNGG	5 cut(s)	365, 619, 858, 1128, 1177
AgsI	TTSAA	5 cut(s)	297, 387, 584, 632, 1213
AhlI	ACTAGT	1 cut(s)	760
AjiI	CACGTC	1 cut(s)	555
AjnI	CCWGG	1 cut(s)	874
AluBI	AGCT	6 cut(s)	81, 158, 317, 578, 910, 1001
AluI	AGCT	6 cut(s)	81, 158, 317, 578, 910, 1001
Alw26I	GTCTC	4 cut(s)	15, 363, 994, 1036
Ama87I	CYCGRG	1 cut(s)	851
AoxI	GGCC	1 cut(s)	651
ApeKI	GCWGC	5 cut(s)	81, 317, 320, 438, 1024
ApoI	RAATTY	2 cut(s)	178, 298
Asp718I	GGTACC	1 cut(s)	636
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	4 cut(s)	60, 622, 812, 1119
AsuHPI	GGTGA	3 cut(s)	97, 617, 881
AvaI	CYCGRG	1 cut(s)	851
AvaII	GGWCC	4 cut(s)	60, 622, 812, 1119
AxyI	CCTNAGG	1 cut(s)	614
BanI	GGYRCC	2 cut(s)	636, 1055
BbsI	GAAGAC	1 cut(s)	383
BbvI	GCAGC	5 cut(s)	68, 304, 332, 450, 1036
BccI	CCATC	3 cut(s)	34, 301, 403
BciT130I	CCWGG	1 cut(s)	876
BcoDI	GTCTC	4 cut(s)	15, 363, 994, 1036
BcuI	ACTAGT	1 cut(s)	760
BfaI	CTAG	5 cut(s)	36, 569, 749, 761, 821
BfmI	CTRYAG	3 cut(s)	318, 900, 1123
BfuAI	ACCTGC	1 cut(s)	1130
BisI	GCNGC	6 cut(s)	82, 318, 321, 439, 1025, 1054
BlsI	GCNGC	6 cut(s)	83, 319, 322, 440, 1026, 1055
BmcAI	AGTACT	1 cut(s)	887
Bme1390I	CCNGG	1 cut(s)	876
Bme18I	GGWCC	4 cut(s)	60, 622, 812, 1119
BmeT110I	CYCGRG	1 cut(s)	851
BmgBI	CACGTC	1 cut(s)	555
BmgT120I	GGNCC	4 cut(s)	60, 622, 812, 1119
BmiI	GGNNCC	3 cut(s)	62, 638, 1057
BmrFI	CCNGG	1 cut(s)	876
BmrI	ACTGGG	2 cut(s)	399, 1004
BmsI	GCATC	3 cut(s)	465, 685, 788
BmuI	ACTGGG	2 cut(s)	399, 1004
BpiI	GAAGAC	1 cut(s)	383
BplI	GAGNNNNNCTC	2 cut(s)	974, 1006
BpmI	CTGGAG	1 cut(s)	524
Bpu10I	CCTNAGC	1 cut(s)	1083
BsaAI	YACGTR	4 cut(s)	347, 471, 733, 939
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	1038
BsaXI	ACNNNNNCTCC	2 cut(s)	1033, 1063
Bsc4I	CCNNNNNNNGG	5 cut(s)	365, 619, 858, 1128, 1177
Bse118I	RCCGGY	1 cut(s)	1170
Bse1I	ACTGG	2 cut(s)	394, 999
Bse21I	CCTNAGG	1 cut(s)	614
BseBI	CCWGG	1 cut(s)	876
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	4 cut(s)	480, 700, 803, 991
BseLI	CCNNNNNNNGG	5 cut(s)	365, 619, 858, 1128, 1177
BseMII	CTCAG	3 cut(s)	65, 605, 1097
BseNI	ACTGG	2 cut(s)	394, 999
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	5 cut(s)	68, 304, 332, 450, 1036
BsgI	GTGCAG	1 cut(s)	1043
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	653
BshNI	GGYRCC	2 cut(s)	636, 1055
BsiHKCI	CYCGRG	1 cut(s)	851
BsiSI	CCGG	3 cut(s)	442, 1039, 1171
BslI	CCNNNNNNNGG	5 cut(s)	365, 619, 858, 1128, 1177
BsmAI	GTCTC	4 cut(s)	15, 363, 994, 1036
BsnI	GGCC	1 cut(s)	653
Bso31I	GGTCTC	1 cut(s)	15
BsoBI	CYCGRG	1 cut(s)	851
BspACI	CCGC	3 cut(s)	678, 1053, 1168
BspANI	GGCC	1 cut(s)	653
BspCNI	CTCAG	3 cut(s)	64, 606, 1096
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	3 cut(s)	62, 638, 1057
BspMAI	CTGCAG	2 cut(s)	322, 1127
BspMI	ACCTGC	1 cut(s)	1130
BspT107I	GGYRCC	2 cut(s)	636, 1055
BspTNI	GGTCTC	1 cut(s)	15
BsrFI	RCCGGY	1 cut(s)	1170
BsrI	ACTGG	2 cut(s)	394, 999
BssAI	RCCGGY	1 cut(s)	1170
BssECI	CCNNGG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	876
Bst4CI	ACNGT	1 cut(s)	648
Bst6I	CTCTTC	2 cut(s)	389, 504
BstBAI	YACGTR	4 cut(s)	347, 471, 733, 939
BstC8I	GCNNGC	1 cut(s)	1090
BstDEI	CTNAG	3 cut(s)	51, 614, 1083
BstF5I	GGATG	4 cut(s)	480, 700, 803, 991
BstFNI	CGCG	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	225
BstMAI	GTCTC	4 cut(s)	15, 363, 994, 1036
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 584
BstNI	CCWGG	1 cut(s)	876
BstNSI	RCATGY	1 cut(s)	962
BstSCI	CCNGG	1 cut(s)	874
BstSFI	CTRYAG	3 cut(s)	318, 900, 1123
BstSNI	TACGTA	2 cut(s)	347, 939
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	5 cut(s)	68, 304, 332, 450, 1036
BstV2I	GAAGAC	1 cut(s)	383
Bsu36I	CCTNAGG	1 cut(s)	614
BsuRI	GGCC	1 cut(s)	653
BtrI	CACGTC	1 cut(s)	555
BtsCI	GGATG	4 cut(s)	480, 700, 803, 991
BtsI	GCAGTG	1 cut(s)	1132
BtsIMutI	CAGTG	2 cut(s)	992, 1132
BveI	ACCTGC	1 cut(s)	1130
Cac8I	GCNNGC	1 cut(s)	1090
CfoI	GCGC	1 cut(s)	225
Cfr10I	RCCGGY	1 cut(s)	1170
Cfr13I	GGNCC	4 cut(s)	60, 622, 812, 1119
Csp6I	GTAC	3 cut(s)	637, 886, 973
CviAII	CATG	6 cut(s)	602, 626, 802, 845, 896, 959
CviQI	GTAC	3 cut(s)	637, 886, 973
DdeI	CTNAG	3 cut(s)	51, 614, 1083
EaeI	YGGCCR	1 cut(s)	651
Eam1104I	CTCTTC	2 cut(s)	389, 504
EarI	CTCTTC	2 cut(s)	389, 504
Eco105I	TACGTA	2 cut(s)	347, 939
Eco31I	GGTCTC	1 cut(s)	15
Eco32I	GATATC	1 cut(s)	610
Eco47I	GGWCC	4 cut(s)	60, 622, 812, 1119
Eco81I	CCTNAGG	1 cut(s)	614
Eco88I	CYCGRG	1 cut(s)	851
EcoRII	CCWGG	1 cut(s)	874
EcoRV	GATATC	1 cut(s)	610
EcoT22I	ATGCAT	1 cut(s)	803
FaeI	CATG	6 cut(s)	605, 629, 805, 848, 899, 962
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FatI	CATG	6 cut(s)	601, 625, 801, 844, 895, 958
Fnu4HI	GCNGC	6 cut(s)	82, 318, 321, 439, 1025, 1054
FokI	GGATG	4 cut(s)	487, 707, 810, 998
Fsp4HI	GCNGC	6 cut(s)	82, 318, 321, 439, 1025, 1054
FspBI	CTAG	5 cut(s)	36, 569, 749, 761, 821
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	6 cut(s)	82, 318, 321, 439, 1025, 1054
GsuI	CTGGAG	1 cut(s)	524
HaeIII	GGCC	1 cut(s)	653
HapII	CCGG	3 cut(s)	442, 1039, 1171
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	6 cut(s)	605, 629, 805, 848, 899, 962
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HinfI	GANTC	7 cut(s)	259, 338, 371, 383, 455, 1014, 1152
HpaII	CCGG	3 cut(s)	442, 1039, 1171
HphI	GGTGA	3 cut(s)	97, 617, 881
Hpy166II	GTNNAC	4 cut(s)	120, 730, 872, 1165
Hpy188I	TCNGA	5 cut(s)	54, 190, 204, 408, 767
Hpy188III	TCNNGA	6 cut(s)	36, 128, 366, 558, 569, 613
Hpy8I	GTNNAC	4 cut(s)	120, 730, 872, 1165
HpyAV	CCTTC	6 cut(s)	205, 393, 508, 626, 1072, 1175
HpyCH4III	ACNGT	1 cut(s)	648
HpyCH4IV	ACGT	5 cut(s)	346, 470, 554, 732, 938
HpyCH4V	TGCA	6 cut(s)	198, 320, 698, 801, 1024, 1125
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 584
HpyF3I	CTNAG	3 cut(s)	51, 614, 1083
HpySE526I	ACGT	5 cut(s)	346, 470, 554, 732, 938
Hsp92II	CATG	6 cut(s)	605, 629, 805, 848, 899, 962
HspAI	GCGC	1 cut(s)	223
KpnI	GGTACC	1 cut(s)	640
LmnI	GCTCC	1 cut(s)	998
Lsp1109I	GCAGC	5 cut(s)	68, 304, 332, 450, 1036
LweI	GCATC	3 cut(s)	465, 685, 788
MaeI	CTAG	5 cut(s)	36, 569, 749, 761, 821
MaeII	ACGT	5 cut(s)	346, 470, 554, 732, 938
MboII	GAAGA	6 cut(s)	94, 176, 179, 388, 406, 521
MluCI	AATT	3 cut(s)	178, 298, 311
MlyI	GAGTC	4 cut(s)	253, 347, 365, 1008
MmeI	TCCRAC	1 cut(s)	397
Mph1103I	ATGCAT	1 cut(s)	803
MseI	TTAA	3 cut(s)	77, 176, 423
MslI	CAYNNNNRTG	1 cut(s)	1032
MspA1I	CMGCKG	2 cut(s)	680, 910
MspI	CCGG	3 cut(s)	442, 1039, 1171
MspR9I	CCNGG	1 cut(s)	876
MvaI	CCWGG	1 cut(s)	876
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	326, 584
NlaIII	CATG	6 cut(s)	605, 629, 805, 848, 899, 962
NlaIV	GGNNCC	3 cut(s)	62, 638, 1057
NmeAIII	GCCGAG	1 cut(s)	1171
NsiI	ATGCAT	1 cut(s)	803
NspI	RCATGY	1 cut(s)	962
PfeI	GAWTC	3 cut(s)	383, 455, 1152
PkrI	GCNGC	6 cut(s)	83, 319, 322, 440, 1026, 1055
PleI	GAGTC	4 cut(s)	253, 346, 365, 1008
PpsI	GAGTC	4 cut(s)	253, 346, 365, 1008
Ppu21I	YACGTR	4 cut(s)	347, 471, 733, 939
PsiI	TTATAA	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	874
PspGI	CCWGG	1 cut(s)	874
PspN4I	GGNNCC	3 cut(s)	62, 638, 1057
PspPI	GGNCC	4 cut(s)	60, 622, 812, 1119
PstI	CTGCAG	2 cut(s)	322, 1127
PvuII	CAGCTG	1 cut(s)	910
RsaI	GTAC	3 cut(s)	638, 887, 974
RsaNI	GTAC	3 cut(s)	637, 886, 973
RseI	CAYNNNNRTG	1 cut(s)	1032
SaqAI	TTAA	3 cut(s)	77, 176, 423
SatI	GCNGC	6 cut(s)	82, 318, 321, 439, 1025, 1054
Sau96I	GGNCC	4 cut(s)	60, 622, 812, 1119
ScaI	AGTACT	1 cut(s)	887
SchI	GAGTC	4 cut(s)	253, 347, 365, 1008
ScrFI	CCNGG	1 cut(s)	876
SfaNI	GCATC	3 cut(s)	465, 685, 788
SfcI	CTRYAG	3 cut(s)	318, 900, 1123
SgrAI	CRCCGGYG	1 cut(s)	1170
SinI	GGWCC	4 cut(s)	60, 622, 812, 1119
SmiMI	CAYNNNNRTG	1 cut(s)	1032
SnaBI	TACGTA	2 cut(s)	347, 939
SpeI	ACTAGT	1 cut(s)	760
Sse9I	AATT	3 cut(s)	178, 298, 311
SsiI	CCGC	3 cut(s)	678, 1053, 1168
SspI	AATATT	1 cut(s)	739
SspMI	CTAG	5 cut(s)	36, 569, 749, 761, 821
StyD4I	CCNGG	1 cut(s)	874
TaaI	ACNGT	1 cut(s)	648
TaiI	ACGT	5 cut(s)	349, 473, 557, 735, 941
TaqI	TCGA	4 cut(s)	209, 374, 642, 1017
TasI	AATT	3 cut(s)	178, 298, 311
TatI	WGTACW	1 cut(s)	885
TauI	GCSGC	1 cut(s)	1056
TfiI	GAWTC	3 cut(s)	383, 455, 1152
Tru1I	TTAA	3 cut(s)	77, 176, 423
Tru9I	TTAA	3 cut(s)	77, 176, 423
TscAI	CASTG	2 cut(s)	999, 1132
TseI	GCWGC	5 cut(s)	81, 317, 320, 438, 1024
TspDTI	ATGAA	3 cut(s)	818, 861, 1098
TspGWI	ACGGA	1 cut(s)	881
TspRI	CASTG	2 cut(s)	999, 1132
VpaK11BI	GGWCC	4 cut(s)	60, 622, 812, 1119
XapI	RAATTY	2 cut(s)	178, 298
XbaI	TCTAGA	2 cut(s)	35, 568
XceI	RCATGY	1 cut(s)	962
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1172
XspI	CTAG	5 cut(s)	36, 569, 749, 761, 821
ZrmI	AGTACT	1 cut(s)	887
Zsp2I	ATGCAT	1 cut(s)	803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.