Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005984

Physical Location & Seq

Genomic Coordinates Forward (+)

2359327 .. 2362650

Gene Structure 3324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g03200.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGTCTTGGAAAAGCAGAGGAGACCCATCATCTTCTAGAAGATTTATTTCTCAGAAATGGACCCTTTTTCTCTGTTTAAGCTGCTTCTGTGCCGGAATGCTCTTCACCAATAGAATGTGGACTGTGCCAGAAAGTAAAGGTATCACACGAAGAACAGCTATGGAAGAAGAAAATTTAAATTTAGTTTCAGAGGGCTGCAATCCGAAATCTTTGAATCAGAAGGAGGTGAAGCGCGAAGATAAAGACATTTTCGGGGAGGTTTATAAGACTCATAATGCTATACAAACATTAGATAAGACCATTTCAAATTTAGAGATGGAATTAGCTGCAGCAAGGGCAACACAGGAGTCGATACGTAGTGGCTCTCCTTTATCAGGTGACTTGAAGACTGATTCAACAGCGAAGAGAAGGTATCTGATGGTTGTTGGAATTAATACTGCTTTTAGCAGCCGGAAAAGAAGAGATTCAGTTCGTGCTACGTGGATGCCACAAGGCGAGAAACGAAAGAGACTAGAGGAAGAGAAGGGTATCATCATTCGCTTTGTCATTGGTCATAGTGCCACATCAGGAGGTATTCTAGATAGAGCTGTTGAAGCAGAGGACAGAAAGCATGGAGATATCCTGAAGCTGGACCATGTTGAAGGGTATCTCGAATTGTCGGCCAAGACAAAGATTTATTTTGCTACTGCTGTTGCTACGTGGGATGCAGATTTTTATGTCAAAGTTGACGATGATGTCCACGTAAATATTGCGACGCTAGGAGAAACACTAGTCAGACACCGAAAGAAAAAGCGCCTGTACATTGGATGCATGAAATCTGGTCCTGTTCTAGCACAAAAGGGAGTGCGATACCATGAACCTGAGTATTGGAAATTTGGTGAGCCAGGAAACAAGTACTTCCGTCATGCTACAGGACAGCTGTATGCGATATCAAAAGATTTGGCTACGTATATATCAATAAACCAGCATGTCCTACACAAGTACGCTAATGAGGATGTCTCATTGGGATCTTGGTTTATTGGACTCGATGTACAGCATATTGATCGATCGGAGACTATGTTGCGGCACCCCACCCGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

361

Amino Acids

41.1

Weight (kDa)

9.35

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05170 AT1G05170 AT2G32430
fragaria_vesca	FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140
malus_domestica	MD09G1109300.v1.1 MD17G1097500.v1.1
prunus_persica	Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1
pyrus_communis	pycom09g03200 pycom17g09300
rosa_chinensis	RchiOBHm_Chr2g0159221
rosa_laevigata	RLG00000021144
rosa_multiflora	Rmu_sc0004528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090690
rosa_rugosa	Rorug02G0474800 Rorug02G0474900
rosa_samantha	Rh2AG541700 Rh2BG554300 Rh2CG524400 Rh2DG564100
rosa_wichuraiana	Rw2G044800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	264
AasI	GACNNNNNNGTC	1 cut(s)	734
AccB1I	GGYRCC	1 cut(s)	1065
AccII	CGCG	1 cut(s)	234
AciI	CCGC	1 cut(s)	1063
AclWI	GGATC	1 cut(s)	1015
AcoI	YGGCCR	1 cut(s)	660
AcsI	RAATTY	4 cut(s)	172, 178, 307, 872
AcuI	CTGAAG	1 cut(s)	644
AfaI	GTAC	4 cut(s)	800, 896, 983, 1032
AfiI	CCNNNNNNNGG	2 cut(s)	374, 628
AgsI	TTSAA	6 cut(s)	214, 306, 385, 396, 593, 641
AhlI	ACTAGT	1 cut(s)	769
AjnI	CCWGG	1 cut(s)	883
AluBI	AGCT	6 cut(s)	81, 158, 326, 587, 628, 919
AluI	AGCT	6 cut(s)	81, 158, 326, 587, 628, 919
Alw26I	GTCTC	4 cut(s)	15, 502, 1003, 1046
AlwI	GGATC	1 cut(s)	1015
AoxI	GGCC	1 cut(s)	660
ApeKI	GCWGC	5 cut(s)	81, 195, 326, 329, 447
ApoI	RAATTY	4 cut(s)	172, 178, 307, 872
AseI	ATTAAT	1 cut(s)	432
Asp700I	GAANNNNTTC	1 cut(s)	463
AspLEI	GCGC	2 cut(s)	234, 795
AspS9I	GGNCC	3 cut(s)	60, 631, 821
AsuHPI	GGTGA	4 cut(s)	97, 238, 389, 890
AvaII	GGWCC	3 cut(s)	60, 631, 821
BanI	GGYRCC	1 cut(s)	1065
BbsI	GAAGAC	1 cut(s)	392
BbvI	GCAGC	5 cut(s)	68, 182, 313, 341, 459
BccI	CCATC	3 cut(s)	34, 310, 412
BcgI	CGANNNNNNTGC	2 cut(s)	1025, 1059
BciT130I	CCWGG	1 cut(s)	885
BcoDI	GTCTC	4 cut(s)	15, 502, 1003, 1046
BcuI	ACTAGT	1 cut(s)	769
BfaI	CTAG	6 cut(s)	36, 512, 578, 758, 770, 830
BfmI	CTRYAG	2 cut(s)	327, 909
BfoI	RGCGCY	1 cut(s)	796
BisI	GCNGC	6 cut(s)	82, 196, 327, 330, 448, 1064
BlsI	GCNGC	6 cut(s)	83, 197, 328, 331, 449, 1065
BmcAI	AGTACT	1 cut(s)	896
Bme1390I	CCNGG	1 cut(s)	885
Bme18I	GGWCC	3 cut(s)	60, 631, 821
BmgT120I	GGNCC	3 cut(s)	60, 631, 821
BmiI	GGNNCC	2 cut(s)	62, 1067
BmrFI	CCNGG	1 cut(s)	885
BmsI	GCATC	3 cut(s)	474, 694, 797
BpiI	GAAGAC	1 cut(s)	392
BplI	GAGNNNNNCTC	2 cut(s)	983, 1015
Bsa29I	ATCGAT	1 cut(s)	1045
BsaAI	YACGTR	5 cut(s)	356, 480, 699, 742, 948
BsaI	GGTCTC	1 cut(s)	15
BsaXI	ACNNNNNCTCC	2 cut(s)	1043, 1073
Bsc4I	CCNNNNNNNGG	2 cut(s)	374, 628
BseBI	CCWGG	1 cut(s)	885
BseCI	ATCGAT	1 cut(s)	1045
BseGI	GGATG	4 cut(s)	489, 709, 812, 1000
BseLI	CCNNNNNNNGG	2 cut(s)	374, 628
BseMII	CTCAG	2 cut(s)	65, 852
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	5 cut(s)	68, 182, 313, 341, 459
Bsh1236I	CGCG	1 cut(s)	234
Bsh1285I	CGRYCG	1 cut(s)	1049
BshFI	GGCC	1 cut(s)	662
BshNI	GGYRCC	1 cut(s)	1065
BshVI	ATCGAT	1 cut(s)	1045
BsiEI	CGRYCG	1 cut(s)	1049
BsiSI	CCGG	2 cut(s)	93, 451
BslI	CCNNNNNNNGG	2 cut(s)	374, 628
BsmAI	GTCTC	4 cut(s)	15, 502, 1003, 1046
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	662
Bso31I	GGTCTC	1 cut(s)	15
Bsp1407I	TGTACA	2 cut(s)	798, 1030
Bsp143I	GATC	3 cut(s)	1007, 1042, 1046
BspACI	CCGC	1 cut(s)	1063
BspANI	GGCC	1 cut(s)	662
BspCNI	CTCAG	2 cut(s)	64, 853
BspDI	ATCGAT	1 cut(s)	1045
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	62, 1067
BspMAI	CTGCAG	1 cut(s)	331
BspPI	GGATC	1 cut(s)	1015
BspQI	GCTCTTC	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	1065
BspTNI	GGTCTC	1 cut(s)	15
BsrGI	TGTACA	2 cut(s)	798, 1030
BssMI	GATC	3 cut(s)	1007, 1042, 1046
Bst2UI	CCWGG	1 cut(s)	885
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	4 cut(s)	107, 398, 454, 513
BstAUI	TGTACA	2 cut(s)	798, 1030
BstBAI	YACGTR	5 cut(s)	356, 480, 699, 742, 948
BstDEI	CTNAG	2 cut(s)	51, 861
BstENI	CCTNNNNNAGG	1 cut(s)	372
BstF5I	GGATG	4 cut(s)	489, 709, 812, 1000
BstFNI	CGCG	1 cut(s)	234
BstH2I	RGCGCY	1 cut(s)	796
BstHHI	GCGC	2 cut(s)	234, 795
BstKTI	GATC	3 cut(s)	1010, 1045, 1049
BstMAI	GTCTC	4 cut(s)	15, 502, 1003, 1046
BstMBI	GATC	3 cut(s)	1007, 1042, 1046
BstMCI	CGRYCG	1 cut(s)	1049
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 593
BstNI	CCWGG	1 cut(s)	885
BstNSI	RCATGY	1 cut(s)	971
BstSCI	CCNGG	1 cut(s)	883
BstSFI	CTRYAG	2 cut(s)	327, 909
BstSNI	TACGTA	2 cut(s)	356, 948
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	5 cut(s)	68, 182, 313, 341, 459
BstV2I	GAAGAC	1 cut(s)	392
BstX2I	RGATCY	1 cut(s)	1007
BstYI	RGATCY	1 cut(s)	1007
Bsu15I	ATCGAT	1 cut(s)	1045
BsuRI	GGCC	1 cut(s)	662
BsuTUI	ATCGAT	1 cut(s)	1045
BtsCI	GGATG	4 cut(s)	489, 709, 812, 1000
CfoI	GCGC	2 cut(s)	234, 795
Cfr13I	GGNCC	3 cut(s)	60, 631, 821
ClaI	ATCGAT	1 cut(s)	1045
CseI	GACGC	1 cut(s)	763
Csp6I	GTAC	4 cut(s)	799, 895, 982, 1031
CviAII	CATG	6 cut(s)	611, 635, 811, 854, 905, 968
CviQI	GTAC	4 cut(s)	799, 895, 982, 1031
DdeI	CTNAG	2 cut(s)	51, 861
DpnI	GATC	3 cut(s)	1009, 1044, 1048
DpnII	GATC	3 cut(s)	1007, 1042, 1046
DraI	TTTAAA	1 cut(s)	177
DrdI	GACNNNNNNGTC	1 cut(s)	734
DseDI	GACNNNNNNGTC	1 cut(s)	734
EaeI	YGGCCR	1 cut(s)	660
Eam1104I	CTCTTC	4 cut(s)	107, 398, 454, 513
EarI	CTCTTC	4 cut(s)	107, 398, 454, 513
Eco105I	TACGTA	2 cut(s)	356, 948
Eco31I	GGTCTC	1 cut(s)	15
Eco32I	GATATC	2 cut(s)	619, 930
Eco47I	GGWCC	3 cut(s)	60, 631, 821
Eco57I	CTGAAG	1 cut(s)	644
EcoNI	CCTNNNNNAGG	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	883
EcoRV	GATATC	2 cut(s)	619, 930
EcoT22I	ATGCAT	1 cut(s)	812
FaeI	CATG	6 cut(s)	614, 638, 814, 857, 908, 971
FatI	CATG	6 cut(s)	610, 634, 810, 853, 904, 967
Fnu4HI	GCNGC	6 cut(s)	82, 196, 327, 330, 448, 1064
FokI	GGATG	4 cut(s)	496, 716, 819, 1007
Fsp4HI	GCNGC	6 cut(s)	82, 196, 327, 330, 448, 1064
FspBI	CTAG	6 cut(s)	36, 512, 578, 758, 770, 830
GlaI	GCGC	2 cut(s)	233, 794
GluI	GCNGC	6 cut(s)	82, 196, 327, 330, 448, 1064
HaeII	RGCGCY	1 cut(s)	796
HaeIII	GGCC	1 cut(s)	662
HapII	CCGG	2 cut(s)	93, 451
HgaI	GACGC	1 cut(s)	763
HhaI	GCGC	2 cut(s)	234, 795
Hin1II	CATG	6 cut(s)	614, 638, 814, 857, 908, 971
Hin6I	GCGC	2 cut(s)	232, 793
HinP1I	GCGC	2 cut(s)	232, 793
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HinfI	GANTC	6 cut(s)	214, 268, 347, 392, 464, 1023
HpaII	CCGG	2 cut(s)	93, 451
HphI	GGTGA	4 cut(s)	97, 238, 389, 890
Hpy166II	GTNNAC	3 cut(s)	120, 727, 739
Hpy188I	TCNGA	7 cut(s)	54, 190, 204, 219, 417, 776, 1051
Hpy188III	TCNNGA	5 cut(s)	36, 567, 578, 622, 650
Hpy8I	GTNNAC	3 cut(s)	120, 727, 739
Hpy99I	CGWCG	1 cut(s)	757
HpyAV	CCTTC	4 cut(s)	214, 402, 517, 635
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	5 cut(s)	355, 479, 698, 741, 947
HpyCH4V	TGCA	4 cut(s)	198, 329, 707, 810
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 593
HpyF3I	CTNAG	2 cut(s)	51, 861
HpySE526I	ACGT	5 cut(s)	355, 479, 698, 741, 947
Hsp92II	CATG	6 cut(s)	614, 638, 814, 857, 908, 971
HspAI	GCGC	2 cut(s)	232, 793
Kzo9I	GATC	3 cut(s)	1007, 1042, 1046
LguI	GCTCTTC	1 cut(s)	107
Lsp1109I	GCAGC	5 cut(s)	68, 182, 313, 341, 459
LweI	GCATC	3 cut(s)	474, 694, 797
MaeI	CTAG	6 cut(s)	36, 512, 578, 758, 770, 830
MaeII	ACGT	5 cut(s)	355, 479, 698, 741, 947
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	3 cut(s)	1009, 1044, 1048
MboI	GATC	3 cut(s)	1007, 1042, 1046
MflI	RGATCY	1 cut(s)	1007
MluCI	AATT	7 cut(s)	172, 178, 307, 320, 429, 653, 872
MlyI	GAGTC	3 cut(s)	262, 356, 1017
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	8 cut(s)	11, 184, 217, 250, 508, 563, 592, 985
Mph1103I	ATGCAT	1 cut(s)	812
MroXI	GAANNNNTTC	1 cut(s)	463
MseI	TTAA	3 cut(s)	77, 176, 432
MspA1I	CMGCKG	1 cut(s)	919
MspI	CCGG	2 cut(s)	93, 451
MspR9I	CCNGG	1 cut(s)	885
Mva1269I	GAATGC	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	885
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	2 cut(s)	335, 593
NdeII	GATC	3 cut(s)	1007, 1042, 1046
NlaIII	CATG	6 cut(s)	614, 638, 814, 857, 908, 971
NlaIV	GGNNCC	2 cut(s)	62, 1067
NmuCI	GTSAC	1 cut(s)	377
NsiI	ATGCAT	1 cut(s)	812
NspI	RCATGY	1 cut(s)	971
PciSI	GCTCTTC	1 cut(s)	107
PctI	GAATGC	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	463
PfeI	GAWTC	3 cut(s)	214, 392, 464
PkrI	GCNGC	6 cut(s)	83, 197, 328, 331, 449, 1065
Ple19I	CGATCG	1 cut(s)	1049
PleI	GAGTC	3 cut(s)	262, 355, 1017
PpsI	GAGTC	3 cut(s)	262, 355, 1017
Ppu21I	YACGTR	5 cut(s)	356, 480, 699, 742, 948
PshBI	ATTAAT	1 cut(s)	432
PsiI	TTATAA	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	883
PspGI	CCWGG	1 cut(s)	883
PspN4I	GGNNCC	2 cut(s)	62, 1067
PspPI	GGNCC	3 cut(s)	60, 631, 821
PstI	CTGCAG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	1007
PvuI	CGATCG	1 cut(s)	1049
PvuII	CAGCTG	1 cut(s)	919
RsaI	GTAC	4 cut(s)	800, 896, 983, 1032
RsaNI	GTAC	4 cut(s)	799, 895, 982, 1031
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	3 cut(s)	77, 176, 432
SatI	GCNGC	6 cut(s)	82, 196, 327, 330, 448, 1064
Sau3AI	GATC	3 cut(s)	1007, 1042, 1046
Sau96I	GGNCC	3 cut(s)	60, 631, 821
ScaI	AGTACT	1 cut(s)	896
SchI	GAGTC	3 cut(s)	262, 356, 1017
ScrFI	CCNGG	1 cut(s)	885
SfaNI	GCATC	3 cut(s)	474, 694, 797
SfcI	CTRYAG	2 cut(s)	327, 909
SinI	GGWCC	3 cut(s)	60, 631, 821
SmiI	ATTTAAAT	1 cut(s)	177
SnaBI	TACGTA	2 cut(s)	356, 948
SpeI	ACTAGT	1 cut(s)	769
Sse9I	AATT	7 cut(s)	172, 178, 307, 320, 429, 653, 872
SsiI	CCGC	1 cut(s)	1063
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	6 cut(s)	36, 512, 578, 758, 770, 830
StyD4I	CCNGG	1 cut(s)	883
SwaI	ATTTAAAT	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	5 cut(s)	358, 482, 701, 744, 950
TaqI	TCGA	4 cut(s)	350, 651, 1026, 1045
TasI	AATT	7 cut(s)	172, 178, 307, 320, 429, 653, 872
TatI	WGTACW	3 cut(s)	798, 894, 1030
TauI	GCSGC	1 cut(s)	1066
TfiI	GAWTC	3 cut(s)	214, 392, 464
Tru1I	TTAA	3 cut(s)	77, 176, 432
Tru9I	TTAA	3 cut(s)	77, 176, 432
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	5 cut(s)	81, 195, 326, 329, 447
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	2 cut(s)	827, 870
TspGWI	ACGGA	1 cut(s)	890
VpaK11BI	GGWCC	3 cut(s)	60, 631, 821
VspI	ATTAAT	1 cut(s)	432
XagI	CCTNNNNNAGG	1 cut(s)	372
XapI	RAATTY	4 cut(s)	172, 178, 307, 872
XbaI	TCTAGA	2 cut(s)	35, 577
XceI	RCATGY	1 cut(s)	971
XmnI	GAANNNNTTC	1 cut(s)	463
XspI	CTAG	6 cut(s)	36, 512, 578, 758, 770, 830
ZrmI	AGTACT	1 cut(s)	896
Zsp2I	ATGCAT	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.