Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005984

Physical Location & Seq

Genomic Coordinates Forward (+)

60611407 .. 60613291

Gene Structure 1885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0474800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGCCATTTCTATACTTTTTGCAACACATATCACTTACTTTCAAAAGAAAAGACCAATTTAATTTTGCAAACCATATCCCTCAATTTTCAGATCAAATGTCTTCTTGTAATATCATCCTTTCTCTCTCCTTGTTCATAACTTGTGTCACGGTCATTATGGCCTCTGCTAGTAATTTCTATCAGGACTTTCACATTTTATTCGGTGACCAACGTGCTCAAATACTTGATGGAGGACAACTTCTCACCCTCTCCCAGGACCAGACTTCCGGGTCCGGCTTCATTTCTCAGAACCAATACCTATTTGGACGGTTCGACATGCAAATGAAGCTGGCGCCCGGGAACACTGCTGGTACCGTCACCACATTTTATCTATCATCTTCAGGGTACCATCATGATGAGATTGACTTGGAGTTTCTTGGAAACACATCCGGGAATCCCTACACTCTCAGTACTAATATCTACACGCAGGGAATAGGGGGTAGAGAACAACAATTCCATCTTTGGTTTGATCCCTCCAAAGACTTCCACACTTACTCCGTTGTTTGGAATGTTCATCGCATTATAATCTTGGTGGATAACAGTCCCATTAGGGTTTTCAACAACTTGGAACTACTTCATGTTCCGTTTCCTAAAAGCCAACCCATGACGATTTACGCCAGTTTGTGGGATGGTGATAGCTGGGCTACACAAGGTGGCCGTGTGAAGACTGACTGGTCTCAAGCTCCTTTCACCGCCTCTTATGGAAGATACAACATCAATGCTTGTCTAGGATCACAGCAGCAAGGTTCATCATCATCATCATATCCATACTCATACACAGACTGTGTTCCCACATCTACCAATTCCTCAAATGTCGACAACTCATGGAGGAATCTAGGGCTTAATGCTGCAGGTCGAAACAGGCTTCGATGGGTTCAAACGAAGTTCATGATCTACAACTACTGCACTGACCGTAATAAGTTTCCCGGTGGTCTGCCACGGGAATGCCAGCATTCCAAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

334

Amino Acids

37.94

Weight (kDa)

7.13

Isoelectric Point (pI)

51.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	60 - 239	3.6e-60	Glycosyl hydrolases family 16
XET_C	PF06955	287 - 329	1.4e-17	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05170 AT1G05170 AT2G32430
fragaria_vesca	FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140 FvH4_6g43140
malus_domestica	MD09G1109300.v1.1 MD17G1097500.v1.1
prunus_persica	Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1 Prupe.3G216900_v2.0.a1
pyrus_communis	pycom09g03200 pycom17g09300
rosa_chinensis	RchiOBHm_Chr2g0159221
rosa_laevigata	RLG00000021144
rosa_multiflora	Rmu_sc0004528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090690
rosa_rugosa	Rorug02G0474800 Rorug02G0474900
rosa_samantha	Rh2AG541700 Rh2BG554300 Rh2CG524400 Rh2DG564100
rosa_wichuraiana	Rw2G044800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	563
AasI	GACNNNNNNGTC	2 cut(s)	268, 712
Acc36I	ACCTGC	1 cut(s)	881
Acc65I	GGTACC	2 cut(s)	350, 384
AccB1I	GGYRCC	3 cut(s)	331, 350, 384
AccB7I	CCANNNNNTGG	1 cut(s)	663
AccI	GTMKAC	1 cut(s)	855
AciI	CCGC	1 cut(s)	732
AclWI	GGATC	2 cut(s)	503, 778
AcoI	YGGCCR	1 cut(s)	694
AcuI	CTGAAG	1 cut(s)	363
AcyI	GRCGYC	1 cut(s)	332
AdeI	CACNNNGTG	1 cut(s)	692
AfaI	GTAC	3 cut(s)	352, 386, 451
AfiI	CCNNNNNNNGG	3 cut(s)	253, 543, 663
AgsI	TTSAA	3 cut(s)	43, 598, 917
AjnI	CCWGG	1 cut(s)	252
AloI	GAACNNNNNNTCC	2 cut(s)	477, 509
AluBI	AGCT	3 cut(s)	328, 678, 722
AluI	AGCT	3 cut(s)	328, 678, 722
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	720
AlwI	GGATC	2 cut(s)	503, 778
Ama87I	CYCGRG	1 cut(s)	335
AoxI	GGCC	2 cut(s)	159, 694
ApeKI	GCWGC	2 cut(s)	778, 887
Asp700I	GAANNNNTTC	1 cut(s)	612
Asp718I	GGTACC	2 cut(s)	350, 384
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	2 cut(s)	256, 270
AsuC2I	CCSGG	5 cut(s)	268, 336, 337, 430, 966
AsuHPI	GGTGA	5 cut(s)	215, 235, 349, 683, 721
AvaI	CYCGRG	1 cut(s)	335
AvaII	GGWCC	2 cut(s)	256, 270
BanI	GGYRCC	3 cut(s)	331, 350, 384
BbsI	GAAGAC	2 cut(s)	93, 710
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	2 cut(s)	790, 874
BccI	CCATC	5 cut(s)	221, 396, 504, 662, 903
BceAI	ACGGC	1 cut(s)	681
BciT130I	CCWGG	1 cut(s)	254
BcnI	CCSGG	5 cut(s)	268, 336, 337, 430, 966
BcoDI	GTCTC	1 cut(s)	720
BfaI	CTAG	4 cut(s)	168, 767, 875, 1003
BfmI	CTRYAG	1 cut(s)	888
BfoI	RGCGCY	1 cut(s)	335
BfuAI	ACCTGC	1 cut(s)	881
BisI	GCNGC	2 cut(s)	779, 888
BlsI	GCNGC	2 cut(s)	780, 889
BmcAI	AGTACT	1 cut(s)	451
Bme1390I	CCNGG	6 cut(s)	254, 268, 336, 337, 430, 966
Bme18I	GGWCC	2 cut(s)	256, 270
BmeT110I	CYCGRG	1 cut(s)	335
BmgT120I	GGNCC	2 cut(s)	256, 270
BmiI	GGNNCC	4 cut(s)	271, 333, 352, 386
BmrFI	CCNGG	6 cut(s)	254, 268, 336, 337, 430, 966
BpiI	GAAGAC	2 cut(s)	93, 710
BpuEI	CTTGAG	1 cut(s)	702
BpuMI	CCSGG	5 cut(s)	268, 336, 337, 430, 966
BsaHI	GRCGYC	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	720
BsaJI	CCNNGG	3 cut(s)	252, 335, 977
BsaXI	ACNNNNNCTCC	2 cut(s)	518, 548
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 543, 663
Bse1I	ACTGG	2 cut(s)	657, 716
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	3 cut(s)	252, 335, 977
BseGI	GGATG	3 cut(s)	114, 425, 673
BseLI	CCNNNNNNNGG	3 cut(s)	253, 543, 663
BseMII	CTCAG	2 cut(s)	299, 460
BseNI	ACTGG	2 cut(s)	657, 716
BseXI	GCAGC	2 cut(s)	790, 874
BseYI	CCCAGC	1 cut(s)	678
BsgI	GTGCAG	1 cut(s)	928
BshFI	GGCC	2 cut(s)	161, 696
BshNI	GGYRCC	3 cut(s)	331, 350, 384
BsiHKAI	GWGCWC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	5 cut(s)	267, 273, 336, 429, 966
BslFI	GGGAC	1 cut(s)	567
BslI	CCNNNNNNNGG	3 cut(s)	253, 543, 663
BsmAI	GTCTC	1 cut(s)	720
BsmFI	GGGAC	1 cut(s)	567
BsmI	GAATGC	2 cut(s)	989, 991
BsnI	GGCC	2 cut(s)	161, 696
Bso31I	GGTCTC	1 cut(s)	720
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	4 cut(s)	91, 508, 770, 930
BspACI	CCGC	1 cut(s)	732
BspANI	GGCC	2 cut(s)	161, 696
BspCNI	CTCAG	2 cut(s)	298, 459
BspHI	TCATGA	2 cut(s)	391, 927
BspLI	GGNNCC	4 cut(s)	271, 333, 352, 386
BspMAI	CTGCAG	1 cut(s)	892
BspMI	ACCTGC	1 cut(s)	881
BspPI	GGATC	2 cut(s)	503, 778
BspT107I	GGYRCC	3 cut(s)	331, 350, 384
BspTNI	GGTCTC	1 cut(s)	720
BsrI	ACTGG	2 cut(s)	657, 716
BssECI	CCNNGG	3 cut(s)	252, 335, 977
BssMI	GATC	4 cut(s)	91, 508, 770, 930
BssNI	GRCGYC	1 cut(s)	332
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	6 cut(s)	151, 309, 355, 581, 824, 953
BstACI	GRCGYC	1 cut(s)	332
BstC8I	GCNNGC	2 cut(s)	330, 989
BstDEI	CTNAG	2 cut(s)	285, 446
BstDSI	CCRYGG	1 cut(s)	977
BstEII	GGTNACC	1 cut(s)	203
BstENI	CCTNNNNNAGG	1 cut(s)	251
BstF5I	GGATG	3 cut(s)	114, 425, 673
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	4 cut(s)	94, 511, 773, 933
BstMAI	GTCTC	1 cut(s)	720
BstMBI	GATC	4 cut(s)	91, 508, 770, 930
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstNI	CCWGG	1 cut(s)	254
BstNSI	RCATGY	1 cut(s)	319
BstPI	GGTNACC	1 cut(s)	203
BstSCI	CCNGG	6 cut(s)	252, 266, 334, 335, 428, 964
BstSFI	CTRYAG	1 cut(s)	888
BstV1I	GCAGC	2 cut(s)	790, 874
BstV2I	GAAGAC	2 cut(s)	93, 710
BsuRI	GGCC	2 cut(s)	161, 696
BtgI	CCRYGG	1 cut(s)	977
BtgZI	GCGATG	1 cut(s)	539
BtsCI	GGATG	3 cut(s)	114, 425, 673
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	342, 945
BveI	ACCTGC	1 cut(s)	881
Cac8I	GCNNGC	2 cut(s)	330, 989
CciI	TCATGA	2 cut(s)	391, 927
CfoI	GCGC	1 cut(s)	334
Cfr13I	GGNCC	2 cut(s)	256, 270
Cfr9I	CCCGGG	1 cut(s)	335
Csp6I	GTAC	3 cut(s)	351, 385, 450
CviAII	CATG	6 cut(s)	316, 392, 617, 643, 864, 928
CviQI	GTAC	3 cut(s)	351, 385, 450
DdeI	CTNAG	2 cut(s)	285, 446
DinI	GGCGCC	1 cut(s)	333
DpnI	GATC	4 cut(s)	93, 510, 772, 932
DpnII	GATC	4 cut(s)	91, 508, 770, 930
DraIII	CACNNNGTG	1 cut(s)	692
DrdI	GACNNNNNNGTC	2 cut(s)	268, 712
DseDI	GACNNNNNNGTC	2 cut(s)	268, 712
EaeI	YGGCCR	1 cut(s)	694
Eco31I	GGTCTC	1 cut(s)	720
Eco47I	GGWCC	2 cut(s)	256, 270
Eco57I	CTGAAG	1 cut(s)	363
Eco88I	CYCGRG	1 cut(s)	335
Eco91I	GGTNACC	1 cut(s)	203
EcoNI	CCTNNNNNAGG	1 cut(s)	251
EcoO65I	GGTNACC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	252
EgeI	GGCGCC	1 cut(s)	333
EheI	GGCGCC	1 cut(s)	333
FaeI	CATG	6 cut(s)	319, 395, 620, 646, 867, 931
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	6 cut(s)	315, 391, 616, 642, 863, 927
FblI	GTMKAC	1 cut(s)	855
Fnu4HI	GCNGC	2 cut(s)	779, 888
FokI	GGATG	3 cut(s)	101, 412, 680
Fsp4HI	GCNGC	2 cut(s)	779, 888
FspBI	CTAG	4 cut(s)	168, 767, 875, 1003
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	2 cut(s)	779, 888
GsaI	CCCAGC	1 cut(s)	682
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	161, 696
HapII	CCGG	5 cut(s)	267, 273, 336, 429, 966
HhaI	GCGC	1 cut(s)	334
Hin1I	GRCGYC	1 cut(s)	332
Hin1II	CATG	6 cut(s)	319, 395, 620, 646, 867, 931
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HinfI	GANTC	2 cut(s)	433, 871
HpaII	CCGG	5 cut(s)	267, 273, 336, 429, 966
HphI	GGTGA	5 cut(s)	215, 235, 349, 683, 721
Hpy166II	GTNNAC	1 cut(s)	856
Hpy188I	TCNGA	2 cut(s)	91, 288
Hpy188III	TCNNGA	3 cut(s)	182, 392, 928
Hpy8I	GTNNAC	1 cut(s)	856
HpyCH4III	ACNGT	6 cut(s)	151, 309, 355, 581, 824, 953
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	5 cut(s)	22, 68, 319, 890, 945
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
HpyF3I	CTNAG	2 cut(s)	285, 446
HpySE526I	ACGT	1 cut(s)	211
Hsp92I	GRCGYC	1 cut(s)	332
Hsp92II	CATG	6 cut(s)	319, 395, 620, 646, 867, 931
HspAI	GCGC	1 cut(s)	332
KasI	GGCGCC	1 cut(s)	331
KpnI	GGTACC	2 cut(s)	354, 388
Kzo9I	GATC	4 cut(s)	91, 508, 770, 930
LmnI	GCTCC	1 cut(s)	727
Lsp1109I	GCAGC	2 cut(s)	790, 874
MaeI	CTAG	4 cut(s)	168, 767, 875, 1003
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	3 cut(s)	145, 203, 355
MalI	GATC	4 cut(s)	93, 510, 772, 932
MboI	GATC	4 cut(s)	91, 508, 770, 930
MboII	GAAGA	4 cut(s)	93, 369, 715, 756
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	6 cut(s)	56, 61, 83, 172, 491, 841
Mly113I	GGCGCC	1 cut(s)	332
MnlI	CCTC	8 cut(s)	90, 172, 224, 257, 523, 745, 856, 861
MroXI	GAANNNNTTC	1 cut(s)	612
MseI	TTAA	2 cut(s)	60, 882
MslI	CAYNNNNRTG	3 cut(s)	320, 393, 982
MspI	CCGG	5 cut(s)	267, 273, 336, 429, 966
MspR9I	CCNGG	6 cut(s)	254, 268, 336, 337, 430, 966
Mva1269I	GAATGC	2 cut(s)	989, 991
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	325
NarI	GGCGCC	1 cut(s)	332
NciI	CCSGG	5 cut(s)	268, 336, 337, 430, 966
NdeII	GATC	4 cut(s)	91, 508, 770, 930
NlaIII	CATG	6 cut(s)	319, 395, 620, 646, 867, 931
NlaIV	GGNNCC	4 cut(s)	271, 333, 352, 386
NmuCI	GTSAC	3 cut(s)	145, 203, 355
NspI	RCATGY	1 cut(s)	319
PagI	TCATGA	2 cut(s)	391, 927
PctI	GAATGC	2 cut(s)	989, 991
PdmI	GAANNNNTTC	1 cut(s)	612
PfeI	GAWTC	2 cut(s)	433, 871
PflMI	CCANNNNNTGG	1 cut(s)	663
PfoI	TCCNGGA	1 cut(s)	428
PkrI	GCNGC	2 cut(s)	780, 889
PluTI	GGCGCC	1 cut(s)	335
PsiI	TTATAA	1 cut(s)	563
Psp6I	CCWGG	1 cut(s)	252
PspEI	GGTNACC	1 cut(s)	203
PspFI	CCCAGC	1 cut(s)	678
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	4 cut(s)	271, 333, 352, 386
PspPI	GGNCC	2 cut(s)	256, 270
PstI	CTGCAG	1 cut(s)	892
RsaI	GTAC	3 cut(s)	352, 386, 451
RsaNI	GTAC	3 cut(s)	351, 385, 450
RseI	CAYNNNNRTG	3 cut(s)	320, 393, 982
SalI	GTCGAC	1 cut(s)	854
SaqAI	TTAA	2 cut(s)	60, 882
SatI	GCNGC	2 cut(s)	779, 888
Sau3AI	GATC	4 cut(s)	91, 508, 770, 930
Sau96I	GGNCC	2 cut(s)	256, 270
ScaI	AGTACT	1 cut(s)	451
ScrFI	CCNGG	6 cut(s)	254, 268, 336, 337, 430, 966
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	8 cut(s)	214, 300, 330, 680, 694, 724, 787, 895
SfcI	CTRYAG	1 cut(s)	888
SfoI	GGCGCC	1 cut(s)	333
SinI	GGWCC	2 cut(s)	256, 270
SmaI	CCCGGG	1 cut(s)	337
SmiMI	CAYNNNNRTG	3 cut(s)	320, 393, 982
SmlI	CTYRAG	1 cut(s)	717
SmoI	CTYRAG	1 cut(s)	717
Sse9I	AATT	6 cut(s)	56, 61, 83, 172, 491, 841
SsiI	CCGC	1 cut(s)	732
SspDI	GGCGCC	1 cut(s)	331
SspMI	CTAG	4 cut(s)	168, 767, 875, 1003
StyD4I	CCNGG	6 cut(s)	252, 266, 334, 335, 428, 964
TaaI	ACNGT	6 cut(s)	151, 309, 355, 581, 824, 953
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	4 cut(s)	312, 855, 895, 907
TasI	AATT	6 cut(s)	56, 61, 83, 172, 491, 841
TatI	WGTACW	1 cut(s)	449
TfiI	GAWTC	2 cut(s)	433, 871
Tru1I	TTAA	2 cut(s)	60, 882
Tru9I	TTAA	2 cut(s)	60, 882
TscAI	CASTG	2 cut(s)	349, 952
TseFI	GTSAC	3 cut(s)	145, 203, 355
TseI	GCWGC	2 cut(s)	778, 887
Tsp45I	GTSAC	3 cut(s)	145, 203, 355
TspDTI	ATGAA	7 cut(s)	124, 268, 338, 542, 605, 777, 916
TspGWI	ACGGA	2 cut(s)	526, 612
TspMI	CCCGGG	1 cut(s)	335
TspRI	CASTG	2 cut(s)	349, 952
Van91I	CCANNNNNTGG	1 cut(s)	663
VpaK11BI	GGWCC	2 cut(s)	256, 270
XagI	CCTNNNNNAGG	1 cut(s)	251
XceI	RCATGY	1 cut(s)	319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	299
XmaI	CCCGGG	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	855
XmnI	GAANNNNTTC	1 cut(s)	612
XspI	CTAG	4 cut(s)	168, 767, 875, 1003
ZrmI	AGTACT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.