AT1G05240

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007613
Physical Location & Seq
Forward (+)
1520278 .. 1523023
2746 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G05240.1

Sequence Viewer

Length: 978 bp
ATGGCGATCAAGAACATTCTCGCCCTTGTGGTTCTTCTTAGCGTGGTTGGAGTTTCTGTCGCCATTCCACAGTTGCTTGACCTCGACTACTACCGGTCTAAGTGTCCCAAGGCAGAGGAAATTGTTCGTGGTGTCACAGTACAATATGTTTCTCGCCAGAAAACCCTTGCCGCTAAACTTCTAAGGATGCATTTCCATGATTGTTTCGTCAGAGGATGTGATGGTTCCGTTCTTCTGAAATCTGCAAAGAATGATGCGGAAAGAGACGCTGTCCCCAACCTGACCCTGAAAGGTTATGAAGTGGTGGATGCGGCCAAGACAGCGCTGGAGAGGAAGTGTCCTAATCTCATTTCTTGCGCTGATGTTCTTGCCTTGGTCGCCAGAGATGCCGTGGCAGTGATCGGGGGACCATGGTGGCCGGTTCCATTGGGCCGCAGGGATGGACGCATCTCGAAATTGAACGATGCATTGCTAAATTTACCATCTCCTTTCGCCGACATAAAGACGCTGAAGAAGAACTTTGCCAACAAGGGTCTTAACGCTAAAGACCTTGTGGTTCTCTCAGGGGGTCACACCATTGGAATCTCTAGTTGCGCTCTCGTCAACAGTCGTCTCTACAACTTCACAGGAAAGGGCGATTCTGACCCATCCATGAACCCTAGCTACGTGAGGGAATTGAAGAGAAAGTGCCCGCCTACAGATTTCAGAACCTCACTGAACATGGACCCAGGCAGTGCGTTGACATTCGACACTCACTACTTCAAGGTCGTGGCTCAGAAGAAAGGGCTCTTCACATCTGACTCTACGCTTCTCGATGACATTGAGACCAAAAACTACGTTCAGACTCAGGCCATTCTCCCTCCTGTGTTTTCTTCTTTCAATAAAGATTTCTCCGATTCCATGGTCAAACTTGGTTTCGTCCAAATTCTTACCGGCAAAAATGGTGAGATCAGGAAGAGATGCGCCTTCCCTAACTAA

Protein Analysis

325

Amino Acids

35.62

Weight (kDa)

9.35

Isoelectric Point (pI)

35.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 43 - 283 2.4e-80 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 171, 257, 311, 433, 692
AcoI YGGCCR 2 cut(s) 312, 416
AcsI RAATTY 2 cut(s) 475, 924
AcuI CTGAAG 1 cut(s) 530
AfaI GTAC 1 cut(s) 141
AfeI AGCGCT 1 cut(s) 324
AgeI ACCGGT 1 cut(s) 93
AgsI TTSAA 4 cut(s) 460, 679, 763, 880
AjnI CCWGG 1 cut(s) 727
AluBI AGCT 1 cut(s) 663
AluI AGCT 1 cut(s) 663
Alw26I GTCTC 3 cut(s) 258, 617, 818
Aor51HI AGCGCT 1 cut(s) 324
AoxI GGCC 4 cut(s) 312, 416, 430, 849
ApoI RAATTY 2 cut(s) 475, 924
AsiGI ACCGGT 1 cut(s) 93
Asp700I GAANNNNTTC 1 cut(s) 123
AspLEI GCGC 4 cut(s) 325, 359, 596, 965
AspS9I GGNCC 3 cut(s) 407, 430, 724
AsuHPI GGTGA 1 cut(s) 956
AvaII GGWCC 2 cut(s) 407, 724
BaeGI GKGCMC 1 cut(s) 692
BanII GRGCYC 1 cut(s) 789
BccI CCATC 4 cut(s) 215, 434, 490, 655
BceAI ACGGC 1 cut(s) 374
BciT130I CCWGG 1 cut(s) 729
BcoDI GTCTC 3 cut(s) 258, 617, 818
BfaI CTAG 2 cut(s) 588, 660
BfmI CTRYAG 1 cut(s) 696
BfoI RGCGCY 1 cut(s) 326
BisI GCNGC 3 cut(s) 171, 312, 433
BlsI GCNGC 3 cut(s) 172, 313, 434
Bme1390I CCNGG 1 cut(s) 729
Bme18I GGWCC 2 cut(s) 407, 724
BmgT120I GGNCC 3 cut(s) 407, 430, 724
BmiI GGNNCC 4 cut(s) 226, 408, 423, 726
BmrFI CCNGG 1 cut(s) 729
BmsI GCATC 7 cut(s) 177, 244, 298, 376, 454, 456, 950
BpmI CTGGAG 1 cut(s) 347
BsaAI YACGTR 1 cut(s) 667
BsaI GGTCTC 1 cut(s) 818
BsaJI CCNNGG 6 cut(s) 108, 372, 390, 410, 727, 900
BsaWI WCCGGW 1 cut(s) 93
BsaXI ACNNNNNCTCC 4 cut(s) 42, 72, 320, 350
Bse118I RCCGGY 3 cut(s) 93, 418, 932
Bse3DI GCAATG 1 cut(s) 467
BseBI CCWGG 1 cut(s) 729
BseDI CCNNGG 6 cut(s) 108, 372, 390, 410, 727, 900
BseGI GGATG 5 cut(s) 192, 221, 313, 445, 647
BseMI GCAATG 1 cut(s) 467
BseMII CTCAG 3 cut(s) 576, 788, 860
BseSI GKGCMC 1 cut(s) 692
BshFI GGCC 4 cut(s) 314, 418, 432, 851
BshTI ACCGGT 1 cut(s) 93
BsiSI CCGG 3 cut(s) 94, 419, 933
BslFI GGGAC 3 cut(s) 90, 257, 420
BsmAI GTCTC 3 cut(s) 258, 617, 818
BsmBI CGTCTC 2 cut(s) 258, 617
BsmFI GGGAC 3 cut(s) 90, 257, 420
BsnI GGCC 4 cut(s) 314, 418, 432, 851
Bso31I GGTCTC 1 cut(s) 818
Bsp1286I GDGCHC 2 cut(s) 692, 789
Bsp143I GATC 3 cut(s) 6, 399, 948
Bsp19I CCATGG 2 cut(s) 410, 900
BspACI CCGC 5 cut(s) 171, 257, 311, 433, 692
BspANI GGCC 4 cut(s) 314, 418, 432, 851
BspCNI CTCAG 3 cut(s) 575, 787, 859
BspLI GGNNCC 4 cut(s) 226, 408, 423, 726
BspQI GCTCTTC 1 cut(s) 794
BspTNI GGTCTC 1 cut(s) 818
BsrDI GCAATG 1 cut(s) 467
BsrFI RCCGGY 3 cut(s) 93, 418, 932
BssAI RCCGGY 3 cut(s) 93, 418, 932
BssECI CCNNGG 6 cut(s) 108, 372, 390, 410, 727, 900
BssMI GATC 3 cut(s) 6, 399, 948
BssT1I CCWWGG 4 cut(s) 108, 372, 410, 900
Bst2UI CCWGG 1 cut(s) 729
Bst4CI ACNGT 3 cut(s) 72, 139, 608
Bst6I CTCTTC 3 cut(s) 674, 794, 950
BstBAI YACGTR 1 cut(s) 667
BstC8I GCNNGC 1 cut(s) 692
BstDEI CTNAG 6 cut(s) 38, 99, 182, 562, 774, 846
BstDSI CCRYGG 3 cut(s) 390, 410, 900
BstF5I GGATG 5 cut(s) 192, 221, 313, 445, 647
BstH2I RGCGCY 1 cut(s) 326
BstHHI GCGC 4 cut(s) 325, 359, 596, 965
BstKTI GATC 3 cut(s) 9, 402, 951
BstMAI GTCTC 3 cut(s) 258, 617, 818
BstMBI GATC 3 cut(s) 6, 399, 948
BstMWI GCNNNNNNNGC 3 cut(s) 320, 377, 386
BstNI CCWGG 1 cut(s) 729
BstSCI CCNGG 1 cut(s) 727
BstSFI CTRYAG 1 cut(s) 696
BstSLI GKGCMC 1 cut(s) 692
BsuRI GGCC 4 cut(s) 314, 418, 432, 851
BtgI CCRYGG 3 cut(s) 390, 410, 900
BtsCI GGATG 5 cut(s) 192, 221, 313, 445, 647
BtsI GCAGTG 2 cut(s) 402, 739
BtsIMutI CAGTG 3 cut(s) 402, 713, 739
Cac8I GCNNGC 1 cut(s) 692
CfoI GCGC 4 cut(s) 325, 359, 596, 965
Cfr10I RCCGGY 3 cut(s) 93, 418, 932
Cfr13I GGNCC 3 cut(s) 407, 430, 724
CseI GACGC 3 cut(s) 275, 453, 514
Csp6I GTAC 1 cut(s) 140
CspAI ACCGGT 1 cut(s) 93
CviAII CATG 5 cut(s) 197, 411, 652, 721, 901
CviJI RGCY 7 cut(s) 314, 418, 432, 663, 773, 787, 851
CviKI_1 RGCY 7 cut(s) 314, 418, 432, 663, 773, 787, 851
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 6 cut(s) 38, 99, 182, 562, 774, 846
DpnI GATC 3 cut(s) 8, 401, 950
DpnII GATC 3 cut(s) 6, 399, 948
EaeI YGGCCR 2 cut(s) 312, 416
Eam1104I CTCTTC 3 cut(s) 674, 794, 950
EarI CTCTTC 3 cut(s) 674, 794, 950
Eco130I CCWWGG 4 cut(s) 108, 372, 410, 900
Eco24I GRGCYC 1 cut(s) 789
Eco31I GGTCTC 1 cut(s) 818
Eco47I GGWCC 2 cut(s) 407, 724
Eco47III AGCGCT 1 cut(s) 324
Eco57I CTGAAG 1 cut(s) 530
EcoRII CCWGG 1 cut(s) 727
EcoT14I CCWWGG 4 cut(s) 108, 372, 410, 900
EcoT22I ATGCAT 2 cut(s) 192, 469
EcoT38I GRGCYC 1 cut(s) 789
ErhI CCWWGG 4 cut(s) 108, 372, 410, 900
Esp3I CGTCTC 2 cut(s) 258, 617
FaeI CATG 5 cut(s) 200, 414, 655, 724, 904
FaiI YATR 8 cut(s) 147, 198, 297, 412, 500, 653, 722, 902
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FaqI GGGAC 3 cut(s) 90, 257, 420
FatI CATG 5 cut(s) 196, 410, 651, 720, 900
FauI CCCGC 1 cut(s) 699
Fnu4HI GCNGC 3 cut(s) 171, 312, 433
FokI GGATG 5 cut(s) 199, 228, 320, 452, 634
FriOI GRGCYC 1 cut(s) 789
Fsp4HI GCNGC 3 cut(s) 171, 312, 433
FspBI CTAG 2 cut(s) 588, 660
GlaI GCGC 4 cut(s) 324, 358, 595, 964
GluI GCNGC 3 cut(s) 171, 312, 433
GsuI CTGGAG 1 cut(s) 347
HaeII RGCGCY 1 cut(s) 326
HaeIII GGCC 4 cut(s) 314, 418, 432, 851
HapII CCGG 3 cut(s) 94, 419, 933
HgaI GACGC 3 cut(s) 275, 453, 514
HhaI GCGC 4 cut(s) 325, 359, 596, 965
Hin1II CATG 5 cut(s) 200, 414, 655, 724, 904
Hin6I GCGC 4 cut(s) 323, 357, 594, 963
HinP1I GCGC 4 cut(s) 323, 357, 594, 963
HincII GTYRAC 2 cut(s) 604, 741
HindII GTYRAC 2 cut(s) 604, 741
HinfI GANTC 5 cut(s) 582, 638, 800, 844, 896
HpaII CCGG 3 cut(s) 94, 419, 933
HphI GGTGA 1 cut(s) 956
Hpy166II GTNNAC 2 cut(s) 604, 741
Hpy188I TCNGA 8 cut(s) 212, 237, 643, 707, 777, 799, 843, 895
Hpy188III TCNNGA 4 cut(s) 10, 451, 812, 952
Hpy8I GTNNAC 2 cut(s) 604, 741
HpyAV CCTTC 1 cut(s) 976
HpyCH4III ACNGT 3 cut(s) 72, 139, 608
HpyCH4IV ACGT 2 cut(s) 666, 837
HpyCH4V TGCA 3 cut(s) 190, 245, 467
HpyF10VI GCNNNNNNNGC 3 cut(s) 320, 377, 386
HpyF3I CTNAG 6 cut(s) 38, 99, 182, 562, 774, 846
HpySE526I ACGT 2 cut(s) 666, 837
Hsp92II CATG 5 cut(s) 200, 414, 655, 724, 904
HspAI GCGC 4 cut(s) 323, 357, 594, 963
Kzo9I GATC 3 cut(s) 6, 399, 948
LguI GCTCTTC 1 cut(s) 794
LweI GCATC 7 cut(s) 177, 244, 298, 376, 454, 456, 950
MaeI CTAG 2 cut(s) 588, 660
MaeII ACGT 2 cut(s) 666, 837
MaeIII GTNAC 2 cut(s) 133, 569
MalI GATC 3 cut(s) 8, 401, 950
MboI GATC 3 cut(s) 6, 399, 948
MboII GAAGA 9 cut(s) 26, 224, 523, 526, 691, 781, 790, 864, 967
MhlI GDGCHC 2 cut(s) 692, 789
MluCI AATT 5 cut(s) 120, 455, 475, 674, 924
MlyI GAGTC 2 cut(s) 794, 838
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 7 cut(s) 92, 109, 206, 324, 663, 721, 870
Mph1103I ATGCAT 2 cut(s) 192, 469
MroXI GAANNNNTTC 1 cut(s) 123
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 1 cut(s) 195
MspI CCGG 3 cut(s) 94, 419, 933
MspR9I CCNGG 1 cut(s) 729
MvaI CCWGG 1 cut(s) 729
MwoI GCNNNNNNNGC 3 cut(s) 320, 377, 386
NcoI CCATGG 2 cut(s) 410, 900
NdeII GATC 3 cut(s) 6, 399, 948
NlaIII CATG 5 cut(s) 200, 414, 655, 724, 904
NlaIV GGNNCC 4 cut(s) 226, 408, 423, 726
NmuCI GTSAC 2 cut(s) 133, 569
NsiI ATGCAT 2 cut(s) 192, 469
PciSI GCTCTTC 1 cut(s) 794
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 3 cut(s) 582, 638, 896
PflFI GACNNNGTC 1 cut(s) 269
PinAI ACCGGT 1 cut(s) 93
PkrI GCNGC 3 cut(s) 172, 313, 434
PleI GAGTC 2 cut(s) 794, 838
PpsI GAGTC 2 cut(s) 794, 838
Ppu21I YACGTR 1 cut(s) 667
Psp6I CCWGG 1 cut(s) 727
PspGI CCWGG 1 cut(s) 727
PspN4I GGNNCC 4 cut(s) 226, 408, 423, 726
PspPI GGNCC 3 cut(s) 407, 430, 724
PsrI GAACNNNNNNTAC 2 cut(s) 647, 679
PsyI GACNNNGTC 1 cut(s) 269
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 195
SapI GCTCTTC 1 cut(s) 794
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 3 cut(s) 171, 312, 433
Sau3AI GATC 3 cut(s) 6, 399, 948
Sau96I GGNCC 3 cut(s) 407, 430, 724
SchI GAGTC 2 cut(s) 794, 838
ScrFI CCNGG 1 cut(s) 729
SduI GDGCHC 2 cut(s) 692, 789
SetI ASST 9 cut(s) 84, 282, 295, 552, 665, 669, 713, 768, 840
SfaNI GCATC 7 cut(s) 177, 244, 298, 376, 454, 456, 950
SfcI CTRYAG 1 cut(s) 696
SinI GGWCC 2 cut(s) 407, 724
SmiMI CAYNNNNRTG 1 cut(s) 195
Sse9I AATT 5 cut(s) 120, 455, 475, 674, 924
SsiI CCGC 5 cut(s) 171, 257, 311, 433, 692
SspMI CTAG 2 cut(s) 588, 660
StyD4I CCNGG 1 cut(s) 727
StyI CCWWGG 4 cut(s) 108, 372, 410, 900
TaaI ACNGT 3 cut(s) 72, 139, 608
TaiI ACGT 2 cut(s) 669, 840
TaqI TCGA 4 cut(s) 84, 452, 747, 813
TasI AATT 5 cut(s) 120, 455, 475, 674, 924
TatI WGTACW 1 cut(s) 139
TauI GCSGC 3 cut(s) 173, 314, 435
TfiI GAWTC 3 cut(s) 582, 638, 896
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 3 cut(s) 402, 720, 739
TseFI GTSAC 2 cut(s) 133, 569
Tsp45I GTSAC 2 cut(s) 133, 569
TspDTI ATGAA 2 cut(s) 312, 668
TspGWI ACGGA 1 cut(s) 217
TspRI CASTG 3 cut(s) 402, 720, 739
Tth111I GACNNNGTC 1 cut(s) 269
VpaK11BI GGWCC 2 cut(s) 407, 724
XapI RAATTY 2 cut(s) 475, 924
XcmI CCANNNNNNNNNTGG 2 cut(s) 322, 388
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 2 cut(s) 588, 660
Zsp2I ATGCAT 2 cut(s) 192, 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.