RchiOBHm_Chr2g0159961

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0007613
Physical Location & Seq
Forward (+)
75991314 .. 75995053
3740 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52849

Sequence Viewer

Length: 780 bp
ATGTTGGAGTTTTATGGTGGTTGTGATGGTTCTGTGCTATTGAAATCAACAGCAAACAAACAAGCTGAGAGAGATGCAATCCCCAACCTAAGCTTAAGAGGGTTCCAAGTCATAGATGCTGTAAAATCTGCAGTAGAAAAGAAGTGCCCTGGTGTTGTTTCTTGTGCTGATATCTTGGCCCTAGTAGCTCGCGACGCAGTATTAATGCTTCATGGTCCATTTTGGGAAGTTCCTACAGGACGAAGAGATGGAAGAGTGTCTATAGCCTCGGAGGCCTTGACAAACTTACCACCTCCTTTTGCTAACATAGCTCAGCTCAAAGGAATGTTTGCTTCAAAGGGTCTATCTGTTAAAGACCTAGTGGTCCTATCAGGAGGACACACCATTGGGACATCTCACTGCTCATCATTCTCTAATCGTATATACAATTTCACCGGTAAAGGTGACACAGACCCCAAATTGGACCAGAATTACGTAGCTCAGTTGAAGATCAAATGTAAGCCGGGGGATGCCAACACACTTGTTGAGATGGACCCTGGAAGCTTCAAAACATTTGATGAAGATTACTACACTCTAGTGACCAAAAGAAGAGGACTTTTCCAATCTGATTCAGCTCTTCTTGATGATATGGAGACGAAAGCCTATGTGACAACCCAAGCCATCACTCATGGATTGACCTTTGCAAAAGATTTTGCTGCATCGATGGTGAAAATGGGTAACATTGGAGTCCTCACTGGAAAAAATGGTGAAATAAGGAAGCAATGTGCTTTTATTAATTGA

Protein Analysis

259

Amino Acids

27.98

Weight (kDa)

8.45

Isoelectric Point (pI)

27.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 4 - 219 9.7e-76 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 362
AccII CGCG 1 cut(s) 192
AfiI CCNNNNNNNGG 1 cut(s) 460
AflII CTTAAG 1 cut(s) 94
AgeI ACCGGT 1 cut(s) 434
AgsI TTSAA 4 cut(s) 43, 336, 487, 547
AjnI CCWGG 2 cut(s) 148, 535
AleI CACNNNNGTG 1 cut(s) 575
AluBI AGCT 8 cut(s) 65, 93, 188, 311, 316, 479, 543, 614
AluI AGCT 8 cut(s) 65, 93, 188, 311, 316, 479, 543, 614
Alw26I GTCTC 1 cut(s) 626
AoxI GGCC 2 cut(s) 177, 273
ApeKI GCWGC 1 cut(s) 695
AseI ATTAAT 2 cut(s) 203, 774
AsiGI ACCGGT 1 cut(s) 434
AspS9I GGNCC 5 cut(s) 178, 215, 364, 463, 532
AsuC2I CCSGG 1 cut(s) 504
AsuHPI GGTGA 4 cut(s) 424, 455, 718, 758
AvaII GGWCC 4 cut(s) 215, 364, 463, 532
BaeGI GKGCMC 1 cut(s) 149
BarI GAAGNNNNNNTAC 2 cut(s) 192, 224
BbvI GCAGC 1 cut(s) 682
BccI CCATC 5 cut(s) 20, 242, 523, 668, 697
BciT130I CCWGG 2 cut(s) 150, 537
BcnI CCSGG 1 cut(s) 504
BcoDI GTCTC 1 cut(s) 626
BfaI CTAG 3 cut(s) 182, 359, 575
BfmI CTRYAG 3 cut(s) 129, 234, 261
BfrI CTTAAG 1 cut(s) 94
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 1 cut(s) 696
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 697
Bme1390I CCNGG 3 cut(s) 150, 504, 537
Bme18I GGWCC 4 cut(s) 215, 364, 463, 532
BmgT120I GGNCC 5 cut(s) 178, 215, 364, 463, 532
BmiI GGNNCC 2 cut(s) 104, 534
BmrFI CCNGG 3 cut(s) 150, 504, 537
BmsI GCATC 4 cut(s) 64, 106, 499, 707
Bpu10I CCTNAGC 1 cut(s) 89
Bpu1102I GCTNAGC 1 cut(s) 312
BpuMI CCSGG 1 cut(s) 504
Bsa29I ATCGAT 1 cut(s) 701
BsaAI YACGTR 1 cut(s) 475
BsaJI CCNNGG 4 cut(s) 148, 267, 503, 535
BsaWI WCCGGW 1 cut(s) 434
Bsc4I CCNNNNNNNGG 1 cut(s) 460
Bse118I RCCGGY 1 cut(s) 434
Bse1I ACTGG 1 cut(s) 739
Bse3DI GCAATG 1 cut(s) 767
BseBI CCWGG 2 cut(s) 150, 537
BseCI ATCGAT 1 cut(s) 701
BseDI CCNNGG 4 cut(s) 148, 267, 503, 535
BseGI GGATG 1 cut(s) 514
BseLI CCNNNNNNNGG 1 cut(s) 460
BseMI GCAATG 1 cut(s) 767
BseMII CTCAG 3 cut(s) 57, 326, 494
BseNI ACTGG 1 cut(s) 739
BseSI GKGCMC 1 cut(s) 149
BseXI GCAGC 1 cut(s) 682
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 2 cut(s) 179, 275
BshTI ACCGGT 1 cut(s) 434
BshVI ATCGAT 1 cut(s) 701
BsiSI CCGG 2 cut(s) 435, 503
BslFI GGGAC 1 cut(s) 403
BslI CCNNNNNNNGG 1 cut(s) 460
BsmAI GTCTC 1 cut(s) 626
BsmBI CGTCTC 1 cut(s) 626
BsmFI GGGAC 1 cut(s) 403
BsnI GGCC 2 cut(s) 179, 275
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 1 cut(s) 489
Bsp1720I GCTNAGC 1 cut(s) 312
Bsp68I TCGCGA 1 cut(s) 192
BspANI GGCC 2 cut(s) 179, 275
BspCNI CTCAG 3 cut(s) 58, 325, 493
BspDI ATCGAT 1 cut(s) 701
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 2 cut(s) 104, 534
BspMAI CTGCAG 1 cut(s) 133
BspQI GCTCTTC 1 cut(s) 621
BspTI CTTAAG 1 cut(s) 94
BsrDI GCAATG 1 cut(s) 767
BsrFI RCCGGY 1 cut(s) 434
BsrI ACTGG 1 cut(s) 739
BssAI RCCGGY 1 cut(s) 434
BssECI CCNNGG 4 cut(s) 148, 267, 503, 535
BssMI GATC 1 cut(s) 489
Bst2UI CCWGG 2 cut(s) 150, 537
Bst6I CTCTTC 4 cut(s) 238, 247, 583, 621
BstAFI CTTAAG 1 cut(s) 94
BstBAI YACGTR 1 cut(s) 475
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 4 cut(s) 66, 89, 312, 480
BstF5I GGATG 1 cut(s) 514
BstFNI CGCG 1 cut(s) 192
BstKTI GATC 1 cut(s) 492
BstMAI GTCTC 1 cut(s) 626
BstMBI GATC 1 cut(s) 489
BstMWI GCNNNNNNNGC 4 cut(s) 185, 194, 272, 308
BstNI CCWGG 2 cut(s) 150, 537
BstSCI CCNGG 3 cut(s) 148, 502, 535
BstSFI CTRYAG 3 cut(s) 129, 234, 261
BstSLI GKGCMC 1 cut(s) 149
BstSNI TACGTA 1 cut(s) 475
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 682
Bsu15I ATCGAT 1 cut(s) 701
BsuRI GGCC 2 cut(s) 179, 275
BsuTUI ATCGAT 1 cut(s) 701
BtsCI GGATG 1 cut(s) 514
BtsI GCAGTG 1 cut(s) 397
BtsIMutI CAGTG 2 cut(s) 397, 732
BtuMI TCGCGA 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 190
Cfr10I RCCGGY 1 cut(s) 434
Cfr13I GGNCC 5 cut(s) 178, 215, 364, 463, 532
ClaI ATCGAT 1 cut(s) 701
CseI GACGC 1 cut(s) 203
CspAI ACCGGT 1 cut(s) 434
CviAII CATG 2 cut(s) 212, 668
DdeI CTNAG 4 cut(s) 66, 89, 312, 480
DpnI GATC 1 cut(s) 491
DpnII GATC 1 cut(s) 489
DrdI GACNNNNNNGTC 1 cut(s) 362
DseDI GACNNNNNNGTC 1 cut(s) 362
Eam1104I CTCTTC 4 cut(s) 238, 247, 583, 621
EarI CTCTTC 4 cut(s) 238, 247, 583, 621
Eco105I TACGTA 1 cut(s) 475
Eco147I AGGCCT 1 cut(s) 275
Eco32I GATATC 1 cut(s) 172
Eco47I GGWCC 4 cut(s) 215, 364, 463, 532
EcoRII CCWGG 2 cut(s) 148, 535
EcoRV GATATC 1 cut(s) 172
Esp3I CGTCTC 1 cut(s) 626
FaeI CATG 2 cut(s) 215, 671
FaqI GGGAC 1 cut(s) 403
FatI CATG 2 cut(s) 211, 667
Fnu4HI GCNGC 1 cut(s) 696
FokI GGATG 1 cut(s) 521
Fsp4HI GCNGC 1 cut(s) 696
FspBI CTAG 3 cut(s) 182, 359, 575
GluI GCNGC 1 cut(s) 696
HaeIII GGCC 2 cut(s) 179, 275
HapII CCGG 2 cut(s) 435, 503
HgaI GACGC 1 cut(s) 203
Hin1II CATG 2 cut(s) 215, 671
HindIII AAGCTT 2 cut(s) 91, 541
HinfI GANTC 2 cut(s) 608, 726
HpaII CCGG 2 cut(s) 435, 503
HphI GGTGA 4 cut(s) 424, 455, 718, 758
Hpy188I TCNGA 2 cut(s) 271, 607
Hpy188III TCNNGA 3 cut(s) 191, 372, 620
Hpy99I CGWCG 1 cut(s) 197
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 4 cut(s) 77, 131, 683, 698
HpyF10VI GCNNNNNNNGC 4 cut(s) 185, 194, 272, 308
HpyF3I CTNAG 4 cut(s) 66, 89, 312, 480
HpySE526I ACGT 1 cut(s) 474
Hsp92II CATG 2 cut(s) 215, 671
Kzo9I GATC 1 cut(s) 489
LguI GCTCTTC 1 cut(s) 621
Lsp1109I GCAGC 1 cut(s) 682
LweI GCATC 4 cut(s) 64, 106, 499, 707
MaeI CTAG 3 cut(s) 182, 359, 575
MaeII ACGT 1 cut(s) 474
MaeIII GTNAC 4 cut(s) 443, 577, 646, 716
MalI GATC 1 cut(s) 491
MboI GATC 1 cut(s) 489
MboII GAAGA 6 cut(s) 255, 264, 499, 572, 600, 608
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 4 cut(s) 427, 458, 469, 775
MlyI GAGTC 1 cut(s) 735
MnlI CCTC 7 cut(s) 92, 265, 277, 303, 368, 584, 740
MseI TTAA 4 cut(s) 95, 203, 351, 774
MslI CAYNNNNRTG 1 cut(s) 575
MspCI CTTAAG 1 cut(s) 94
MspI CCGG 2 cut(s) 435, 503
MspR9I CCNGG 3 cut(s) 150, 504, 537
MvaI CCWGG 2 cut(s) 150, 537
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 4 cut(s) 185, 194, 272, 308
NciI CCSGG 1 cut(s) 504
NdeII GATC 1 cut(s) 489
NlaIII CATG 2 cut(s) 215, 671
NlaIV GGNNCC 2 cut(s) 104, 534
NmuCI GTSAC 3 cut(s) 443, 577, 646
NruI TCGCGA 1 cut(s) 192
OliI CACNNNNGTG 1 cut(s) 575
PceI AGGCCT 1 cut(s) 275
PciSI GCTCTTC 1 cut(s) 621
PfeI GAWTC 1 cut(s) 608
PinAI ACCGGT 1 cut(s) 434
PkrI GCNGC 1 cut(s) 697
PleI GAGTC 1 cut(s) 734
PpsI GAGTC 1 cut(s) 734
Ppu21I YACGTR 1 cut(s) 475
PshBI ATTAAT 2 cut(s) 203, 774
Psp6I CCWGG 2 cut(s) 148, 535
PspGI CCWGG 2 cut(s) 148, 535
PspN4I GGNNCC 2 cut(s) 104, 534
PspPI GGNCC 5 cut(s) 178, 215, 364, 463, 532
PstI CTGCAG 1 cut(s) 133
RruI TCGCGA 1 cut(s) 192
RseI CAYNNNNRTG 1 cut(s) 575
SapI GCTCTTC 1 cut(s) 621
SaqAI TTAA 4 cut(s) 95, 203, 351, 774
SatI GCNGC 1 cut(s) 696
Sau3AI GATC 1 cut(s) 489
Sau96I GGNCC 5 cut(s) 178, 215, 364, 463, 532
SchI GAGTC 1 cut(s) 735
ScrFI CCNGG 3 cut(s) 150, 504, 537
SduI GDGCHC 1 cut(s) 149
SfaNI GCATC 4 cut(s) 64, 106, 499, 707
SfcI CTRYAG 3 cut(s) 129, 234, 261
SinI GGWCC 4 cut(s) 215, 364, 463, 532
SmiMI CAYNNNNRTG 1 cut(s) 575
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
SnaBI TACGTA 1 cut(s) 475
Sse9I AATT 4 cut(s) 427, 458, 469, 775
SseBI AGGCCT 1 cut(s) 275
SspMI CTAG 3 cut(s) 182, 359, 575
StuI AGGCCT 1 cut(s) 275
StyD4I CCNGG 3 cut(s) 148, 502, 535
TaiI ACGT 1 cut(s) 477
TaqI TCGA 1 cut(s) 701
TasI AATT 4 cut(s) 427, 458, 469, 775
TfiI GAWTC 1 cut(s) 608
Tru1I TTAA 4 cut(s) 95, 203, 351, 774
Tru9I TTAA 4 cut(s) 95, 203, 351, 774
TscAI CASTG 2 cut(s) 404, 739
TseFI GTSAC 3 cut(s) 443, 577, 646
TseI GCWGC 1 cut(s) 695
Tsp45I GTSAC 3 cut(s) 443, 577, 646
TspDTI ATGAA 2 cut(s) 200, 573
TspRI CASTG 2 cut(s) 404, 739
Vha464I CTTAAG 1 cut(s) 94
VpaK11BI GGWCC 4 cut(s) 215, 364, 463, 532
VspI ATTAAT 2 cut(s) 203, 774
XspI CTAG 3 cut(s) 182, 359, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.