Rh2AG546200

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0007613
Physical Location & Seq
Forward (+)
77510541 .. 77518813
8273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG546200.1

Sequence Viewer

Length: 768 bp
ATGGCTATTCATCAAAAGCTTCTCTCAGTTTTTGTCTTGCTTTTTCTGCTGGCTTTCAACTTGAGCGATGCGCAGAACTTGAAAGTTCGGTTCTACCATAAAACATGCCCAAATCTGGAGGCCATTGTTGCAGCGACTACTATTCAGTACATATCTCGGGCACCAACACTTGCTGCTCCTTTGTTGAGGATGCATTTTCATGATTGCTTTGTTAGGCCAAACAGATGTGATGGCTCTGTGCTAATTAATTCAACAGCAAGCAATCAAGCAGAGAAAGCAAATACCGCCAACCTGAGCTTGAGAGGGTTCCATGTCATTGACGCTGTAAAATCTGCAGTAGAAAAGAAGTGTCCCGGCATTGTTTCCTGTGCAGATATCTTGGCGTTGGTAGCACGTGATGCAGTAGGATTTCTTCATCATGGTGCATTTTGGCAAGTTCCAACAGGACGTAGAGATGGGAGAGTGTCCTTAGCCTCAGAGGCCGCAAGAAACTTACCTCCTCCATTTGCCAACATTACTCAGCTAAAAGCAATGTTTAGCGGAAAGGGTTTAAGTGTTAAAGACCTTGCGGTTCTATCAGGAGGGCATACAATTGGAACATCTCACTGTGGACCCGTCACAAATCGATTGTACAACTTCACTGGCCGCGGTGATACAGACCTGAGTTTGGACAAAAATTACATTGCACAGTTGAAGATCAAAGGCAAACCAGGAGATATCACTACCACCATATTTGGAGATGGACCCCGGAAGCTTCAAGACGTTTGA

Protein Analysis

255

Amino Acids

27.59

Weight (kDa)

9.58

Isoelectric Point (pI)

23.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 47 - 240 1.2e-60 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 72
AccB1I GGYRCC 1 cut(s) 160
AccII CGCG 1 cut(s) 648
AciI CCGC 6 cut(s) 285, 483, 540, 569, 646, 648
AcoI YGGCCR 1 cut(s) 643
AcvI CACGTG 1 cut(s) 395
AfaI GTAC 2 cut(s) 149, 632
AfiI CCNNNNNNNGG 2 cut(s) 115, 667
AgsI TTSAA 5 cut(s) 58, 82, 252, 694, 758
AjnI CCWGG 1 cut(s) 709
AluBI AGCT 4 cut(s) 19, 297, 523, 754
AluI AGCT 4 cut(s) 19, 297, 523, 754
Ama87I CYCGRG 1 cut(s) 156
AoxI GGCC 4 cut(s) 120, 215, 480, 643
ApeKI GCWGC 2 cut(s) 131, 173
AseI ATTAAT 1 cut(s) 246
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 2 cut(s) 611, 743
AsuC2I CCSGG 2 cut(s) 354, 748
AsuHPI GGTGA 1 cut(s) 662
AvaI CYCGRG 1 cut(s) 156
AvaII GGWCC 2 cut(s) 611, 743
BaeGI GKGCMC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 160
BarI GAAGNNNNNNTAC 2 cut(s) 396, 428
BbrPI CACGTG 1 cut(s) 395
BbvI GCAGC 2 cut(s) 143, 160
BccI CCATC 3 cut(s) 224, 449, 734
BciT130I CCWGG 1 cut(s) 711
BcnI CCSGG 2 cut(s) 354, 748
BfmI CTRYAG 1 cut(s) 333
BglI GCCNNNNNGGC 1 cut(s) 479
BisI GCNGC 4 cut(s) 132, 174, 483, 646
BlsI GCNGC 4 cut(s) 133, 175, 484, 647
Bme1390I CCNGG 3 cut(s) 354, 711, 748
Bme18I GGWCC 2 cut(s) 611, 743
BmeT110I CYCGRG 1 cut(s) 156
BmgT120I GGNCC 2 cut(s) 611, 743
BmiI GGNNCC 4 cut(s) 162, 308, 613, 745
BmrFI CCNGG 3 cut(s) 354, 711, 748
BmsI GCATC 3 cut(s) 58, 180, 388
BpmI CTGGAG 1 cut(s) 137
Bpu10I CCTNAGC 2 cut(s) 293, 469
BpuEI CTTGAG 2 cut(s) 82, 319
BpuMI CCSGG 2 cut(s) 354, 748
Bsa29I ATCGAT 1 cut(s) 625
BsaAI YACGTR 1 cut(s) 395
BsaJI CCNNGG 2 cut(s) 646, 746
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 667
Bse1I ACTGG 1 cut(s) 646
Bse3DI GCAATG 2 cut(s) 537, 681
BseBI CCWGG 1 cut(s) 711
BseCI ATCGAT 1 cut(s) 625
BseDI CCNNGG 2 cut(s) 646, 746
BseGI GGATG 1 cut(s) 195
BseLI CCNNNNNNNGG 2 cut(s) 115, 667
BseMI GCAATG 2 cut(s) 537, 681
BseMII CTCAG 5 cut(s) 39, 284, 489, 533, 653
BseNI ACTGG 1 cut(s) 646
BseRI GAGGAG 1 cut(s) 489
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 2 cut(s) 143, 160
BsgI GTGCAG 1 cut(s) 390
Bsh1236I CGCG 1 cut(s) 648
BshFI GGCC 4 cut(s) 122, 217, 482, 645
BshNI GGYRCC 1 cut(s) 160
BshVI ATCGAT 1 cut(s) 625
BsiHKCI CYCGRG 1 cut(s) 156
BsiSI CCGG 2 cut(s) 354, 748
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 2 cut(s) 115, 667
BsmFI GGGAC 1 cut(s) 336
BsnI GGCC 4 cut(s) 122, 217, 482, 645
BsoBI CYCGRG 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 163
Bsp1407I TGTACA 1 cut(s) 630
Bsp143I GATC 1 cut(s) 696
BspACI CCGC 6 cut(s) 285, 483, 540, 569, 646, 648
BspANI GGCC 4 cut(s) 122, 217, 482, 645
BspCNI CTCAG 5 cut(s) 38, 285, 488, 532, 654
BspDI ATCGAT 1 cut(s) 625
BspFNI CGCG 1 cut(s) 648
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 4 cut(s) 162, 308, 613, 745
BspMAI CTGCAG 1 cut(s) 337
BspT107I GGYRCC 1 cut(s) 160
BsrDI GCAATG 2 cut(s) 537, 681
BsrGI TGTACA 1 cut(s) 630
BsrI ACTGG 1 cut(s) 646
BssECI CCNNGG 2 cut(s) 646, 746
BssMI GATC 1 cut(s) 696
Bst2UI CCWGG 1 cut(s) 711
Bst4CI ACNGT 2 cut(s) 608, 690
BstAPI GCANNNNNTGC 1 cut(s) 398
BstAUI TGTACA 1 cut(s) 630
BstBAI YACGTR 1 cut(s) 395
BstC8I GCNNGC 2 cut(s) 51, 259
BstDEI CTNAG 6 cut(s) 25, 293, 469, 475, 519, 662
BstDSI CCRYGG 1 cut(s) 646
BstF5I GGATG 1 cut(s) 195
BstFNI CGCG 1 cut(s) 648
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 1 cut(s) 699
BstMBI GATC 1 cut(s) 696
BstMWI GCNNNNNNNGC 7 cut(s) 46, 128, 275, 284, 389, 398, 479
BstNI CCWGG 1 cut(s) 711
BstNSI RCATGY 1 cut(s) 108
BstSCI CCNGG 3 cut(s) 352, 709, 746
BstSFI CTRYAG 1 cut(s) 333
BstSLI GKGCMC 1 cut(s) 163
BstUI CGCG 1 cut(s) 648
BstV1I GCAGC 2 cut(s) 143, 160
Bsu15I ATCGAT 1 cut(s) 625
BsuRI GGCC 4 cut(s) 122, 217, 482, 645
BsuTUI ATCGAT 1 cut(s) 625
BtgI CCRYGG 1 cut(s) 646
BtgZI GCGATG 1 cut(s) 81
BtsCI GGATG 1 cut(s) 195
BtsIMutI CAGTG 2 cut(s) 604, 639
Cac8I GCNNGC 2 cut(s) 51, 259
CciI TCATGA 1 cut(s) 199
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 611, 743
Cfr42I CCGCGG 1 cut(s) 649
ClaI ATCGAT 1 cut(s) 625
CseI GACGC 1 cut(s) 329
Csp6I GTAC 2 cut(s) 148, 631
CspCI CAANNNNNGTGG 2 cut(s) 715, 750
CviAII CATG 4 cut(s) 105, 200, 311, 419
CviQI GTAC 2 cut(s) 148, 631
DdeI CTNAG 6 cut(s) 25, 293, 469, 475, 519, 662
DpnI GATC 1 cut(s) 698
DpnII GATC 1 cut(s) 696
EaeI YGGCCR 1 cut(s) 643
Eco32I GATATC 2 cut(s) 376, 718
Eco47I GGWCC 2 cut(s) 611, 743
Eco72I CACGTG 1 cut(s) 395
Eco88I CYCGRG 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 709
EcoRV GATATC 2 cut(s) 376, 718
EcoT22I ATGCAT 1 cut(s) 195
FaeI CATG 4 cut(s) 108, 203, 314, 422
FaiI YATR 8 cut(s) 99, 106, 152, 201, 312, 420, 588, 731
FaqI GGGAC 1 cut(s) 336
FatI CATG 4 cut(s) 104, 199, 310, 418
Fnu4HI GCNGC 4 cut(s) 132, 174, 483, 646
FokI GGATG 1 cut(s) 202
Fsp4HI GCNGC 4 cut(s) 132, 174, 483, 646
FspI TGCGCA 1 cut(s) 72
GlaI GCGC 1 cut(s) 72
GluI GCNGC 4 cut(s) 132, 174, 483, 646
GsuI CTGGAG 1 cut(s) 137
HaeIII GGCC 4 cut(s) 122, 217, 482, 645
HapII CCGG 2 cut(s) 354, 748
HgaI GACGC 1 cut(s) 329
HhaI GCGC 1 cut(s) 73
Hin1II CATG 4 cut(s) 108, 203, 314, 422
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HindIII AAGCTT 2 cut(s) 17, 752
HpaII CCGG 2 cut(s) 354, 748
HphI GGTGA 1 cut(s) 662
Hpy166II GTNNAC 1 cut(s) 611
Hpy188I TCNGA 1 cut(s) 478
Hpy188III TCNNGA 4 cut(s) 116, 200, 579, 758
Hpy8I GTNNAC 1 cut(s) 611
HpyCH4III ACNGT 2 cut(s) 608, 690
HpyCH4IV ACGT 3 cut(s) 394, 448, 762
HpyCH4V TGCA 7 cut(s) 131, 193, 335, 371, 401, 425, 686
HpyF10VI GCNNNNNNNGC 7 cut(s) 46, 128, 275, 284, 389, 398, 479
HpyF3I CTNAG 6 cut(s) 25, 293, 469, 475, 519, 662
HpySE526I ACGT 3 cut(s) 394, 448, 762
Hsp92II CATG 4 cut(s) 108, 203, 314, 422
HspAI GCGC 1 cut(s) 71
KspI CCGCGG 1 cut(s) 649
Kzo9I GATC 1 cut(s) 696
LmnI GCTCC 1 cut(s) 181
Lsp1109I GCAGC 2 cut(s) 143, 160
LweI GCATC 3 cut(s) 58, 180, 388
MaeII ACGT 3 cut(s) 394, 448, 762
MaeIII GTNAC 1 cut(s) 616
MalI GATC 1 cut(s) 698
MboI GATC 1 cut(s) 696
MboII GAAGA 2 cut(s) 404, 706
MfeI CAATTG 1 cut(s) 591
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 4 cut(s) 243, 247, 591, 676
MmeI TCCRAC 1 cut(s) 464
MnlI CCTC 8 cut(s) 112, 180, 296, 472, 484, 507, 510, 575
Mph1103I ATGCAT 1 cut(s) 195
MseI TTAA 3 cut(s) 246, 551, 558
MslI CAYNNNNRTG 2 cut(s) 198, 420
MspA1I CMGCKG 1 cut(s) 648
MspI CCGG 2 cut(s) 354, 748
MspR9I CCNGG 3 cut(s) 354, 711, 748
MunI CAATTG 1 cut(s) 591
MvaI CCWGG 1 cut(s) 711
MvnI CGCG 1 cut(s) 648
MwoI GCNNNNNNNGC 7 cut(s) 46, 128, 275, 284, 389, 398, 479
NciI CCSGG 2 cut(s) 354, 748
NdeII GATC 1 cut(s) 696
NlaIII CATG 4 cut(s) 108, 203, 314, 422
NlaIV GGNNCC 4 cut(s) 162, 308, 613, 745
NmuCI GTSAC 1 cut(s) 616
NsbI TGCGCA 1 cut(s) 72
NsiI ATGCAT 1 cut(s) 195
NspI RCATGY 1 cut(s) 108
PagI TCATGA 1 cut(s) 199
PkrI GCNGC 4 cut(s) 133, 175, 484, 647
PmaCI CACGTG 1 cut(s) 395
PmlI CACGTG 1 cut(s) 395
Ppu21I YACGTR 1 cut(s) 395
PshBI ATTAAT 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 709
PspCI CACGTG 1 cut(s) 395
PspGI CCWGG 1 cut(s) 709
PspN4I GGNNCC 4 cut(s) 162, 308, 613, 745
PspPI GGNCC 2 cut(s) 611, 743
PstI CTGCAG 1 cut(s) 337
RsaI GTAC 2 cut(s) 149, 632
RsaNI GTAC 2 cut(s) 148, 631
RseI CAYNNNNRTG 2 cut(s) 198, 420
SacII CCGCGG 1 cut(s) 649
SaqAI TTAA 3 cut(s) 246, 551, 558
SatI GCNGC 4 cut(s) 132, 174, 483, 646
Sau3AI GATC 1 cut(s) 696
Sau96I GGNCC 2 cut(s) 611, 743
ScrFI CCNGG 3 cut(s) 354, 711, 748
SduI GDGCHC 1 cut(s) 163
SfaNI GCATC 3 cut(s) 58, 180, 388
SfcI CTRYAG 1 cut(s) 333
Sfr303I CCGCGG 1 cut(s) 649
SgrBI CCGCGG 1 cut(s) 649
SinI GGWCC 2 cut(s) 611, 743
SmiMI CAYNNNNRTG 2 cut(s) 198, 420
SmlI CTYRAG 2 cut(s) 61, 298
SmoI CTYRAG 2 cut(s) 61, 298
Sse9I AATT 4 cut(s) 243, 247, 591, 676
SsiI CCGC 6 cut(s) 285, 483, 540, 569, 646, 648
StyD4I CCNGG 3 cut(s) 352, 709, 746
TaaI ACNGT 2 cut(s) 608, 690
TaiI ACGT 3 cut(s) 397, 451, 765
TaqI TCGA 1 cut(s) 625
TasI AATT 4 cut(s) 243, 247, 591, 676
TatI WGTACW 2 cut(s) 147, 630
TauI GCSGC 2 cut(s) 485, 648
Tru1I TTAA 3 cut(s) 246, 551, 558
Tru9I TTAA 3 cut(s) 246, 551, 558
TscAI CASTG 2 cut(s) 611, 646
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 2 cut(s) 131, 173
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 2 cut(s) 188, 404
TspRI CASTG 2 cut(s) 611, 646
VpaK11BI GGWCC 2 cut(s) 611, 743
VspI ATTAAT 1 cut(s) 246
XceI RCATGY 1 cut(s) 108
Zsp2I ATGCAT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.