Rroxscaffold_2G00090120

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0007613
Physical Location & Seq
Reverse (-)
11938336 .. 11939809
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00090120.1

Sequence Viewer

Length: 1041 bp
ATGTCTCATAGCATCATATCTCACTTCTTAATTGTTCGTTACGTCTTTCTAAAGACAATGGTTCATATCCAAAAGCTTGTCTCAGTTTTTTCACTTCAACTCCTGCTTGTTCTGTTTGCCTTGGACTCCACTACCTATGCACTGCAAGTTGGGTTCTACCAGAAAACCTGTCCAAATTTAGAGGCTATTGTCCATGCGACTACTTATAACTACATATCTCGGGCACCAACTCTTGCTGCTCCTTTGTTAAGAATGCATTTCCATGATTGTTTTGTTAGGGGTTGTGATGGTTCTGTGCTATTGAAATCAACAGCAAACAAACAAGCTGAAAAAGATGCAATCCCCAACCTAAGCTTAAGAGGGTTCCAAGTCATAGATGCTGTAAAATCTGCAGTAGAAAAGAAGTGCCCTGGTGTTGTTTCTTGTGCTGATATCTTGGCCCTGGTAGCTCGTGACGCAGTATTAATGCTTCATGGTCCATTTTGGGAAGTTCCTACAGGACGAAGAGATGGAAGAGTGTCAATAGCCTCGGAGGCCTTGACAAACTTACCACCTCCTTTTGCTAACATAGCTCAGCTCAAAGGAATGTTTGCTTCGAAGGGTCTGACTGTTAAAGACCTAGTGGTCCTATCAGGAGGACACACCATTGGGACATCTCATTGCTCATCATTCTCGAATCGTATATACAATTTCACCGGTAAAGGTGACACAGACCCCAAATTGGATCGGAATTACGTAGCTCAGTTGAAGATCAAATGTAAGCCGGGGGATGCCAACACCCTTGTTGAGATGGACCCTGGAAGCTTCAAAACATTCGATGAAGATTACTACACTCTAGTGACCAAAAGAAGAGGACTTTTCCAATCTGATTCAGCTCTTCTTGATGATACGGAGACGAAAGCCTATGTGACAACCCAAGCCATCACTCATGGATCGACCTTTGCAAAAGATTTTGCTGCATCGATGGTGAAAATGGGTAACATTGGAGTCCTCACTGGAAAAAATGGTGAAATAAGGAAGCAATGTGCTTTTATTAATTGA

Protein Analysis

346

Amino Acids

37.9

Weight (kDa)

9.08

Isoelectric Point (pI)

30.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 67 - 306 5.6e-87 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 207
AasI GACNNNNNNGTC 1 cut(s) 623
AccB1I GGYRCC 1 cut(s) 223
AclWI GGATC 2 cut(s) 732, 940
AcsI RAATTY 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 721
AflII CTTAAG 1 cut(s) 355
AgeI ACCGGT 1 cut(s) 695
AgsI TTSAA 4 cut(s) 98, 304, 748, 808
AjnI CCWGG 3 cut(s) 409, 441, 796
AleI CACNNNNGTG 1 cut(s) 836
AluBI AGCT 9 cut(s) 76, 326, 354, 449, 572, 577, 740, 804, 875
AluI AGCT 9 cut(s) 76, 326, 354, 449, 572, 577, 740, 804, 875
Alw26I GTCTC 3 cut(s) 9, 85, 887
AlwI GGATC 2 cut(s) 732, 940
Ama87I CYCGRG 1 cut(s) 219
AoxI GGCC 2 cut(s) 438, 534
ApeKI GCWGC 2 cut(s) 236, 956
ApoI RAATTY 1 cut(s) 175
AseI ATTAAT 2 cut(s) 464, 1035
AsiGI ACCGGT 1 cut(s) 695
AspS9I GGNCC 4 cut(s) 439, 476, 625, 793
AsuC2I CCSGG 1 cut(s) 765
AsuHPI GGTGA 4 cut(s) 685, 716, 979, 1019
AsuII TTCGAA 1 cut(s) 596
AvaI CYCGRG 1 cut(s) 219
AvaII GGWCC 3 cut(s) 476, 625, 793
BaeGI GKGCMC 2 cut(s) 226, 410
BanI GGYRCC 1 cut(s) 223
BarI GAAGNNNNNNTAC 2 cut(s) 453, 485
BauI CACGAG 1 cut(s) 450
BbvI GCAGC 2 cut(s) 223, 943
BccI CCATC 5 cut(s) 281, 503, 784, 929, 958
BciT130I CCWGG 3 cut(s) 411, 443, 798
BcnI CCSGG 1 cut(s) 765
BcoDI GTCTC 3 cut(s) 9, 85, 887
BfaI CTAG 2 cut(s) 620, 836
BfmI CTRYAG 2 cut(s) 390, 495
BfrI CTTAAG 1 cut(s) 355
BglI GCCNNNNNGGC 1 cut(s) 533
BisI GCNGC 2 cut(s) 237, 957
BlpI GCTNAGC 1 cut(s) 573
BlsI GCNGC 2 cut(s) 238, 958
Bme1390I CCNGG 4 cut(s) 411, 443, 765, 798
Bme18I GGWCC 3 cut(s) 476, 625, 793
BmeT110I CYCGRG 1 cut(s) 219
BmgT120I GGNCC 4 cut(s) 439, 476, 625, 793
BmiI GGNNCC 3 cut(s) 225, 365, 795
BmrFI CCNGG 4 cut(s) 411, 443, 765, 798
BmsI GCATC 5 cut(s) 21, 325, 367, 760, 968
Bpu10I CCTNAGC 1 cut(s) 350
Bpu1102I GCTNAGC 1 cut(s) 573
Bpu14I TTCGAA 1 cut(s) 596
BpuMI CCSGG 1 cut(s) 765
Bsa29I ATCGAT 1 cut(s) 962
BsaAI YACGTR 1 cut(s) 736
BsaJI CCNNGG 6 cut(s) 120, 409, 441, 528, 764, 796
BsaWI WCCGGW 1 cut(s) 695
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 721
Bse118I RCCGGY 1 cut(s) 695
Bse1I ACTGG 1 cut(s) 1000
Bse3DI GCAATG 2 cut(s) 658, 1028
BseBI CCWGG 3 cut(s) 411, 443, 798
BseCI ATCGAT 1 cut(s) 962
BseDI CCNNGG 6 cut(s) 120, 409, 441, 528, 764, 796
BseGI GGATG 1 cut(s) 775
BseLI CCNNNNNNNGG 1 cut(s) 721
BseMI GCAATG 2 cut(s) 658, 1028
BseMII CTCAG 3 cut(s) 96, 587, 755
BseNI ACTGG 1 cut(s) 1000
BseSI GKGCMC 2 cut(s) 226, 410
BseXI GCAGC 2 cut(s) 223, 943
BshFI GGCC 2 cut(s) 440, 536
BshNI GGYRCC 1 cut(s) 223
BshTI ACCGGT 1 cut(s) 695
BshVI ATCGAT 1 cut(s) 962
BsiHKCI CYCGRG 1 cut(s) 219
BsiSI CCGG 2 cut(s) 696, 764
BslFI GGGAC 1 cut(s) 664
BslI CCNNNNNNNGG 1 cut(s) 721
BsmAI GTCTC 3 cut(s) 9, 85, 887
BsmBI CGTCTC 1 cut(s) 887
BsmFI GGGAC 1 cut(s) 664
BsmI GAATGC 1 cut(s) 258
BsnI GGCC 2 cut(s) 440, 536
BsoBI CYCGRG 1 cut(s) 219
Bsp119I TTCGAA 1 cut(s) 596
Bsp1286I GDGCHC 2 cut(s) 226, 410
Bsp143I GATC 3 cut(s) 724, 750, 932
Bsp1720I GCTNAGC 1 cut(s) 573
BspANI GGCC 2 cut(s) 440, 536
BspCNI CTCAG 3 cut(s) 95, 586, 754
BspDI ATCGAT 1 cut(s) 962
BspLI GGNNCC 3 cut(s) 225, 365, 795
BspMAI CTGCAG 1 cut(s) 394
BspPI GGATC 2 cut(s) 732, 940
BspQI GCTCTTC 1 cut(s) 882
BspT104I TTCGAA 1 cut(s) 596
BspT107I GGYRCC 1 cut(s) 223
BspTI CTTAAG 1 cut(s) 355
BsrDI GCAATG 2 cut(s) 658, 1028
BsrFI RCCGGY 1 cut(s) 695
BsrI ACTGG 1 cut(s) 1000
BssAI RCCGGY 1 cut(s) 695
BssECI CCNNGG 6 cut(s) 120, 409, 441, 528, 764, 796
BssMI GATC 3 cut(s) 724, 750, 932
BssSI CACGAG 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 3 cut(s) 411, 443, 798
Bst4CI ACNGT 1 cut(s) 610
Bst6I CTCTTC 4 cut(s) 499, 508, 844, 882
BstAFI CTTAAG 1 cut(s) 355
BstBAI YACGTR 1 cut(s) 736
BstBI TTCGAA 1 cut(s) 596
BstDEI CTNAG 4 cut(s) 82, 350, 573, 741
BstF5I GGATG 1 cut(s) 775
BstKTI GATC 3 cut(s) 727, 753, 935
BstMAI GTCTC 3 cut(s) 9, 85, 887
BstMBI GATC 3 cut(s) 724, 750, 932
BstMWI GCNNNNNNNGC 4 cut(s) 446, 455, 533, 569
BstNI CCWGG 3 cut(s) 411, 443, 798
BstSCI CCNGG 4 cut(s) 409, 441, 763, 796
BstSFI CTRYAG 2 cut(s) 390, 495
BstSLI GKGCMC 2 cut(s) 226, 410
BstSNI TACGTA 1 cut(s) 736
BstV1I GCAGC 2 cut(s) 223, 943
Bsu15I ATCGAT 1 cut(s) 962
BsuRI GGCC 2 cut(s) 440, 536
BsuTUI ATCGAT 1 cut(s) 962
BtsCI GGATG 1 cut(s) 775
BtsI GCAGTG 1 cut(s) 140
BtsIMutI CAGTG 2 cut(s) 140, 993
Cfr10I RCCGGY 1 cut(s) 695
Cfr13I GGNCC 4 cut(s) 439, 476, 625, 793
ClaI ATCGAT 1 cut(s) 962
CseI GACGC 1 cut(s) 464
CspAI ACCGGT 1 cut(s) 695
CviAII CATG 4 cut(s) 194, 263, 473, 929
DdeI CTNAG 4 cut(s) 82, 350, 573, 741
DpnI GATC 3 cut(s) 726, 752, 934
DpnII GATC 3 cut(s) 724, 750, 932
DrdI GACNNNNNNGTC 1 cut(s) 623
DseDI GACNNNNNNGTC 1 cut(s) 623
Eam1104I CTCTTC 4 cut(s) 499, 508, 844, 882
EarI CTCTTC 4 cut(s) 499, 508, 844, 882
Eco105I TACGTA 1 cut(s) 736
Eco130I CCWWGG 1 cut(s) 120
Eco147I AGGCCT 1 cut(s) 536
Eco32I GATATC 1 cut(s) 433
Eco47I GGWCC 3 cut(s) 476, 625, 793
Eco88I CYCGRG 1 cut(s) 219
EcoRII CCWGG 3 cut(s) 409, 441, 796
EcoRV GATATC 1 cut(s) 433
EcoT14I CCWWGG 1 cut(s) 120
EcoT22I ATGCAT 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 887
FaeI CATG 4 cut(s) 197, 266, 476, 932
FaqI GGGAC 1 cut(s) 664
FatI CATG 4 cut(s) 193, 262, 472, 928
Fnu4HI GCNGC 2 cut(s) 237, 957
FokI GGATG 1 cut(s) 782
Fsp4HI GCNGC 2 cut(s) 237, 957
FspBI CTAG 2 cut(s) 620, 836
GluI GCNGC 2 cut(s) 237, 957
HaeIII GGCC 2 cut(s) 440, 536
HapII CCGG 2 cut(s) 696, 764
HgaI GACGC 1 cut(s) 464
Hin1II CATG 4 cut(s) 197, 266, 476, 932
HindIII AAGCTT 3 cut(s) 74, 352, 802
HinfI GANTC 4 cut(s) 125, 676, 869, 987
HpaII CCGG 2 cut(s) 696, 764
HphI GGTGA 4 cut(s) 685, 716, 979, 1019
Hpy188I TCNGA 4 cut(s) 532, 606, 729, 868
Hpy188III TCNNGA 4 cut(s) 452, 633, 673, 881
HpyAV CCTTC 1 cut(s) 592
HpyCH4III ACNGT 1 cut(s) 610
HpyCH4IV ACGT 2 cut(s) 42, 735
HpyCH4V TGCA 7 cut(s) 140, 145, 256, 338, 392, 944, 959
HpyF10VI GCNNNNNNNGC 4 cut(s) 446, 455, 533, 569
HpyF3I CTNAG 4 cut(s) 82, 350, 573, 741
HpySE526I ACGT 2 cut(s) 42, 735
Hsp92II CATG 4 cut(s) 197, 266, 476, 932
Kzo9I GATC 3 cut(s) 724, 750, 932
LguI GCTCTTC 1 cut(s) 882
LmnI GCTCC 1 cut(s) 244
Lsp1109I GCAGC 2 cut(s) 223, 943
LweI GCATC 5 cut(s) 21, 325, 367, 760, 968
MaeI CTAG 2 cut(s) 620, 836
MaeII ACGT 2 cut(s) 42, 735
MaeIII GTNAC 6 cut(s) 38, 452, 704, 838, 907, 977
MalI GATC 3 cut(s) 726, 752, 934
MboI GATC 3 cut(s) 724, 750, 932
MboII GAAGA 6 cut(s) 516, 525, 760, 833, 861, 869
MhlI GDGCHC 2 cut(s) 226, 410
MluCI AATT 6 cut(s) 30, 175, 688, 719, 730, 1036
MlyI GAGTC 2 cut(s) 119, 996
MnlI CCTC 8 cut(s) 175, 353, 526, 538, 564, 629, 845, 1001
Mph1103I ATGCAT 1 cut(s) 258
MseI TTAA 6 cut(s) 29, 248, 356, 464, 612, 1035
MslI CAYNNNNRTG 2 cut(s) 261, 836
MspCI CTTAAG 1 cut(s) 355
MspI CCGG 2 cut(s) 696, 764
MspR9I CCNGG 4 cut(s) 411, 443, 765, 798
Mva1269I GAATGC 1 cut(s) 258
MvaI CCWGG 3 cut(s) 411, 443, 798
MwoI GCNNNNNNNGC 4 cut(s) 446, 455, 533, 569
NciI CCSGG 1 cut(s) 765
NdeII GATC 3 cut(s) 724, 750, 932
NlaIII CATG 4 cut(s) 197, 266, 476, 932
NlaIV GGNNCC 3 cut(s) 225, 365, 795
NmuCI GTSAC 4 cut(s) 452, 704, 838, 907
NsiI ATGCAT 1 cut(s) 258
NspV TTCGAA 1 cut(s) 596
OliI CACNNNNGTG 1 cut(s) 836
PceI AGGCCT 1 cut(s) 536
PciSI GCTCTTC 1 cut(s) 882
PctI GAATGC 1 cut(s) 258
PfeI GAWTC 2 cut(s) 676, 869
PinAI ACCGGT 1 cut(s) 695
PkrI GCNGC 2 cut(s) 238, 958
PleI GAGTC 2 cut(s) 119, 995
PpsI GAGTC 2 cut(s) 119, 995
Ppu21I YACGTR 1 cut(s) 736
PshBI ATTAAT 2 cut(s) 464, 1035
PsiI TTATAA 1 cut(s) 207
Psp6I CCWGG 3 cut(s) 409, 441, 796
PspGI CCWGG 3 cut(s) 409, 441, 796
PspN4I GGNNCC 3 cut(s) 225, 365, 795
PspPI GGNCC 4 cut(s) 439, 476, 625, 793
PstI CTGCAG 1 cut(s) 394
RseI CAYNNNNRTG 2 cut(s) 261, 836
SapI GCTCTTC 1 cut(s) 882
SaqAI TTAA 6 cut(s) 29, 248, 356, 464, 612, 1035
SatI GCNGC 2 cut(s) 237, 957
Sau3AI GATC 3 cut(s) 724, 750, 932
Sau96I GGNCC 4 cut(s) 439, 476, 625, 793
SchI GAGTC 2 cut(s) 119, 996
ScrFI CCNGG 4 cut(s) 411, 443, 765, 798
SduI GDGCHC 2 cut(s) 226, 410
SfaNI GCATC 5 cut(s) 21, 325, 367, 760, 968
SfcI CTRYAG 2 cut(s) 390, 495
SfuI TTCGAA 1 cut(s) 596
SinI GGWCC 3 cut(s) 476, 625, 793
SmiMI CAYNNNNRTG 2 cut(s) 261, 836
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
SnaBI TACGTA 1 cut(s) 736
Sse9I AATT 6 cut(s) 30, 175, 688, 719, 730, 1036
SseBI AGGCCT 1 cut(s) 536
SspMI CTAG 2 cut(s) 620, 836
StuI AGGCCT 1 cut(s) 536
StyD4I CCNGG 4 cut(s) 409, 441, 763, 796
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 1 cut(s) 610
TaiI ACGT 2 cut(s) 45, 738
TaqI TCGA 5 cut(s) 596, 674, 816, 935, 962
TasI AATT 6 cut(s) 30, 175, 688, 719, 730, 1036
TfiI GAWTC 2 cut(s) 676, 869
Tru1I TTAA 6 cut(s) 29, 248, 356, 464, 612, 1035
Tru9I TTAA 6 cut(s) 29, 248, 356, 464, 612, 1035
TscAI CASTG 2 cut(s) 147, 1000
TseFI GTSAC 4 cut(s) 452, 704, 838, 907
TseI GCWGC 2 cut(s) 236, 956
Tsp45I GTSAC 4 cut(s) 452, 704, 838, 907
TspDTI ATGAA 3 cut(s) 53, 461, 834
TspGWI ACGGA 1 cut(s) 905
TspRI CASTG 2 cut(s) 147, 1000
Vha464I CTTAAG 1 cut(s) 355
VpaK11BI GGWCC 3 cut(s) 476, 625, 793
VspI ATTAAT 2 cut(s) 464, 1035
XapI RAATTY 1 cut(s) 175
XspI CTAG 2 cut(s) 620, 836
Zsp2I ATGCAT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.