Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007613

Physical Location & Seq

Genomic Coordinates Reverse (-)

11934472 .. 11934997

Gene Structure 526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00090110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGACTATTCATCAAAAGCTTCTCTCAGTTTTTGTCTGGCTTGTTCTGTTGGCTTTCAACTTGAGCGATGCGCAGAACTTGAAAGTTGGGTTCTACCATAAAGCATGCCCAAATCTTGAGGCCATTGTCGCAGCGACTACTTATCAGTACATATCTCGGGCACCAACACTTGCTGCTCCTTTGTTGAGAATGCATTTTCATGATTGCTTTGTTAGGGGATGTGATGGCTCTGTGCTAATTAATTCAACAGCAAGCAATCAAGCAGAGAAAGCAAATTTCGCCAACCTGAGCTTGAGAGGGTTCCATGTCATTGACGCTGTAAAATCTGCAGTAGAAAAGAAGTGTCCCGGCATTGTTTCCTGTGCAGATATCTTGGCGTTGGTAGCACGCGATGCAGTAGGATTTGTAAGACAAATTAGAACTTTTTCATCCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006725 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009698 GO:0009808 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0019748 GO:0030054 GO:0030312 GO:0042221 GO:0044237 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1901360 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

145

Amino Acids

15.84

Weight (kDa)

9.12

Isoelectric Point (pI)

31.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	46 - 135	6.2e-32	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05240 AT1G05250
fragaria_vesca	FvH4_6g43490
malus_domestica	MD09G1106000.v1.1 MD17G1093700.v1.1
prunus_persica	Prupe.3G219600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0159961 RchiOBHm_Chr2g0159971
rosa_laevigata	RLG00000021188 RLG00000021190
rosa_multiflora	Rmu_sc0006940.1_g000002
rosa_roxburghii	Rroxscaffold_2G00090110 Rroxscaffold_2G00090120
rosa_rugosa	Rorug02G0479500 Rorug02G0479600
rosa_samantha	Rh2AG546100 Rh2AG546200 Rh2BG559400 Rh2BG559500 Rh2CG529500 Rh2CG529600 Rh2DG568100 Rh2DG568200
rosa_wichuraiana	Rw2G045170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	72
AccB1I	GGYRCC	1 cut(s)	160
AccII	CGCG	1 cut(s)	390
AcsI	RAATTY	1 cut(s)	274
AfaI	GTAC	1 cut(s)	149
AgsI	TTSAA	3 cut(s)	58, 82, 246
AluBI	AGCT	2 cut(s)	19, 291
AluI	AGCT	2 cut(s)	19, 291
Ama87I	CYCGRG	1 cut(s)	156
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	2 cut(s)	131, 173
ApoI	RAATTY	1 cut(s)	274
AseI	ATTAAT	1 cut(s)	240
Asp700I	GAANNNNTTC	1 cut(s)	424
AspLEI	GCGC	1 cut(s)	73
AsuC2I	CCSGG	1 cut(s)	348
AvaI	CYCGRG	1 cut(s)	156
BaeGI	GKGCMC	1 cut(s)	163
BanI	GGYRCC	1 cut(s)	160
BbvI	GCAGC	2 cut(s)	143, 160
BccI	CCATC	1 cut(s)	218
BcnI	CCSGG	1 cut(s)	348
BfmI	CTRYAG	1 cut(s)	327
BisI	GCNGC	2 cut(s)	132, 174
BlsI	GCNGC	2 cut(s)	133, 175
Bme1390I	CCNGG	1 cut(s)	348
BmeT110I	CYCGRG	1 cut(s)	156
BmiI	GGNNCC	2 cut(s)	162, 302
BmrFI	CCNGG	1 cut(s)	348
BmsI	GCATC	2 cut(s)	58, 382
Bpu10I	CCTNAGC	1 cut(s)	287
BpuEI	CTTGAG	3 cut(s)	82, 137, 313
BpuMI	CCSGG	1 cut(s)	348
BseGI	GGATG	2 cut(s)	224, 428
BseMII	CTCAG	2 cut(s)	39, 278
BseSI	GKGCMC	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	143, 160
BsgI	GTGCAG	1 cut(s)	384
Bsh1236I	CGCG	1 cut(s)	390
BshFI	GGCC	1 cut(s)	122
BshNI	GGYRCC	1 cut(s)	160
BsiHKCI	CYCGRG	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	348
BslFI	GGGAC	1 cut(s)	330
BsmFI	GGGAC	1 cut(s)	330
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	122
BsoBI	CYCGRG	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	163
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	2 cut(s)	38, 279
BspFNI	CGCG	1 cut(s)	390
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	162, 302
BspMAI	CTGCAG	1 cut(s)	331
BspT107I	GGYRCC	1 cut(s)	160
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstC8I	GCNNGC	3 cut(s)	106, 253, 388
BstDEI	CTNAG	2 cut(s)	25, 287
BstF5I	GGATG	2 cut(s)	224, 428
BstFNI	CGCG	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 269, 278, 383, 392
BstNSI	RCATGY	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	346
BstSFI	CTRYAG	1 cut(s)	327
BstSLI	GKGCMC	1 cut(s)	163
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	2 cut(s)	143, 160
BsuRI	GGCC	1 cut(s)	122
BtgZI	GCGATG	2 cut(s)	81, 405
BtsCI	GGATG	2 cut(s)	224, 428
Cac8I	GCNNGC	3 cut(s)	106, 253, 388
CciI	TCATGA	1 cut(s)	199
CfoI	GCGC	1 cut(s)	73
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	3 cut(s)	105, 200, 305
CviJI	RGCY	6 cut(s)	19, 40, 53, 122, 228, 291
CviKI_1	RGCY	6 cut(s)	19, 40, 53, 122, 228, 291
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	25, 287
Eco32I	GATATC	1 cut(s)	370
Eco88I	CYCGRG	1 cut(s)	156
EcoRV	GATATC	1 cut(s)	370
EcoT22I	ATGCAT	1 cut(s)	195
FaeI	CATG	3 cut(s)	108, 203, 308
FaiI	YATR	6 cut(s)	99, 106, 152, 201, 306, 436
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	3 cut(s)	104, 199, 304
Fnu4HI	GCNGC	2 cut(s)	132, 174
FokI	GGATG	2 cut(s)	231, 415
Fsp4HI	GCNGC	2 cut(s)	132, 174
FspI	TGCGCA	1 cut(s)	72
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	2 cut(s)	132, 174
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	1 cut(s)	348
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	3 cut(s)	108, 203, 308
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HindIII	AAGCTT	1 cut(s)	17
HpaII	CCGG	1 cut(s)	348
Hpy188III	TCNNGA	2 cut(s)	116, 200
HpyCH4V	TGCA	4 cut(s)	193, 329, 365, 395
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 269, 278, 383, 392
HpyF3I	CTNAG	2 cut(s)	25, 287
Hsp92II	CATG	3 cut(s)	108, 203, 308
HspAI	GCGC	1 cut(s)	71
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	4 cut(s)	22, 299, 361, 373
Lsp1109I	GCAGC	2 cut(s)	143, 160
LweI	GCATC	2 cut(s)	58, 382
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	4 cut(s)	237, 241, 274, 414
MnlI	CCTC	2 cut(s)	112, 290
Mph1103I	ATGCAT	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	424
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	198
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	1 cut(s)	348
Mva1269I	GAATGC	1 cut(s)	195
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	5 cut(s)	128, 269, 278, 383, 392
NciI	CCSGG	1 cut(s)	348
NlaIII	CATG	3 cut(s)	108, 203, 308
NlaIV	GGNNCC	2 cut(s)	162, 302
NsbI	TGCGCA	1 cut(s)	72
NsiI	ATGCAT	1 cut(s)	195
NspI	RCATGY	1 cut(s)	108
PaeI	GCATGC	1 cut(s)	108
PagI	TCATGA	1 cut(s)	199
PctI	GAATGC	1 cut(s)	195
PdmI	GAANNNNTTC	1 cut(s)	424
PkrI	GCNGC	2 cut(s)	133, 175
PshBI	ATTAAT	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	162, 302
PstI	CTGCAG	1 cut(s)	331
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	2 cut(s)	132, 174
ScrFI	CCNGG	1 cut(s)	348
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	3 cut(s)	21, 288, 293
SfaNI	GCATC	2 cut(s)	58, 382
SfcI	CTRYAG	1 cut(s)	327
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	3 cut(s)	61, 116, 292
SmoI	CTYRAG	3 cut(s)	61, 116, 292
SphI	GCATGC	1 cut(s)	108
Sse9I	AATT	4 cut(s)	237, 241, 274, 414
StyD4I	CCNGG	1 cut(s)	346
TasI	AATT	4 cut(s)	237, 241, 274, 414
TatI	WGTACW	1 cut(s)	147
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseI	GCWGC	2 cut(s)	131, 173
TspDTI	ATGAA	2 cut(s)	188, 417
VspI	ATTAAT	1 cut(s)	240
XapI	RAATTY	1 cut(s)	274
XceI	RCATGY	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	424
Zsp2I	ATGCAT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.