Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007613

Physical Location & Seq

Genomic Coordinates Forward (+)

22069866 .. 22072470

Gene Structure 2605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G219600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCTACTCAGAAGCTTATCTCAGTTTTGTTGCTTCAACTCCTGCTTGTTCTGTTGGCCTCAGACTTCAGCAATGGGCAGAAGTTGAAAGTTGGGTTTTACCACAAAACATGCCCAAACTTAGAGGCTATTGTGGCAAAAACTACTCAGCATTACATATCTCGCGCACCAACTCTTGCTGCTCCTTTGTTAAGGCTGCATTTTCATGATTGTTTTGTTAGGGGATGTGATGGTTCTGTGCTGTTGAATTCCACCGCGAGCAATAGCGCTGAGAAAGATGCAATCCCCAACCTAAGCTTAAGAGGGTTCCATGTCATAGATGCTGCGAAATCTGCAGTAGAAAAGAAGTGTCCTGGTGTTGTTTCTTGTGCTGATATCTTGGCATTGGTAGCTCGAGACGCAGTAAGAATGCTTCCTGGATCATTTTGGGAGGTTCCGACAGGACGTAGAGATGGAAGAGTGTCAGTAAACTCAGAGGCCTTAAGAGGGTTACCATCTCCTTTTGCAAACATAACACAGCTCAAAGCAAAATTTGCTTCAAAGGGTCTAAGTGTTAAAGACCTAGTGGTTCTATCAGGAGGACACACCATCGGAACATCTCACTGCGATTCCTTTTCAAGTCGCTTGTACAATTTCACCGGTAAAGGAGACACAGACCCGAAATTGGACAAAAACTACATAGCTCGGCTGAAGAAAAAATGTAAGCCAGGGGACACCAAAACCCTGGTTGAAATGGACCCTGGAAGCTTCAAATCATTTGATGAAGATTACTACACTCTTGTCGCCAAAAGAAGAGGACTTTTCCATTCTGATTCAGCTCTTCTTGATGACCCTGAGACAAGAGCCTATGTGATACAGCAAGCCACCTCTCATGGTGGAGCCACCTTCCTAAAAGACTTTGGTGCCTCAATGGTAAATATGGGAAACATTGGGGTCCTCACAGGCAACTCAGGTGAAATAAGGAAGCAATGTGCTCTTGTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006725 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009698 GO:0009808 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0019748 GO:0030054 GO:0030312 GO:0042221 GO:0044237 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1901360 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

329

Amino Acids

35.46

Weight (kDa)

9.25

Isoelectric Point (pI)

29.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05240 AT1G05250
fragaria_vesca	FvH4_6g43490
malus_domestica	MD09G1106000.v1.1 MD17G1093700.v1.1
prunus_persica	Prupe.3G219600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0159961 RchiOBHm_Chr2g0159971
rosa_laevigata	RLG00000021188 RLG00000021190
rosa_multiflora	Rmu_sc0006940.1_g000002
rosa_roxburghii	Rroxscaffold_2G00090110 Rroxscaffold_2G00090120
rosa_rugosa	Rorug02G0479500 Rorug02G0479600
rosa_samantha	Rh2AG546100 Rh2AG546200 Rh2BG559400 Rh2BG559500 Rh2CG529500 Rh2CG529600 Rh2DG568100 Rh2DG568200
rosa_wichuraiana	Rw2G045170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	902
AccII	CGCG	2 cut(s)	165, 257
AciI	CCGC	1 cut(s)	255
AclWI	GGATC	1 cut(s)	427
AcsI	RAATTY	2 cut(s)	247, 530
AcuI	CTGAAG	2 cut(s)	52, 710
AfaI	GTAC	1 cut(s)	629
AfeI	AGCGCT	1 cut(s)	268
AfiI	CCNNNNNNNGG	2 cut(s)	486, 664
AflII	CTTAAG	2 cut(s)	298, 481
AgeI	ACCGGT	1 cut(s)	638
AgsI	TTSAA	7 cut(s)	38, 88, 247, 540, 618, 731, 751
AjnI	CCWGG	5 cut(s)	352, 415, 706, 723, 739
AluBI	AGCT	7 cut(s)	16, 297, 392, 520, 683, 747, 818
AluI	AGCT	7 cut(s)	16, 297, 392, 520, 683, 747, 818
Alw21I	GWGCWC	1 cut(s)	976
Alw26I	GTCTC	3 cut(s)	390, 642, 830
AlwI	GGATC	1 cut(s)	427
Ama87I	CYCGRG	1 cut(s)	393
Aor51HI	AGCGCT	1 cut(s)	268
AoxI	GGCC	2 cut(s)	57, 477
ApeKI	GCWGC	3 cut(s)	179, 196, 323
ApoI	RAATTY	2 cut(s)	247, 530
AsiGI	ACCGGT	1 cut(s)	638
AspLEI	GCGC	2 cut(s)	167, 269
AspS9I	GGNCC	2 cut(s)	736, 934
AsuHPI	GGTGA	2 cut(s)	628, 965
AvaI	CYCGRG	1 cut(s)	393
AvaII	GGWCC	2 cut(s)	736, 934
BanI	GGYRCC	1 cut(s)	902
BarI	GAAGNNNNNNTAC	2 cut(s)	396, 428
Bbv12I	GWGCWC	1 cut(s)	976
BbvI	GCAGC	3 cut(s)	166, 183, 310
BccI	CCATC	4 cut(s)	224, 446, 502, 596
BciT130I	CCWGG	5 cut(s)	354, 417, 708, 725, 741
BcoDI	GTCTC	3 cut(s)	390, 642, 830
BfaI	CTAG	1 cut(s)	563
BfmI	CTRYAG	1 cut(s)	333
BfoI	RGCGCY	1 cut(s)	270
BfrI	CTTAAG	2 cut(s)	298, 481
BisI	GCNGC	3 cut(s)	180, 197, 324
BlsI	GCNGC	3 cut(s)	181, 198, 325
Bme1390I	CCNGG	5 cut(s)	354, 417, 708, 725, 741
Bme18I	GGWCC	2 cut(s)	736, 934
BmeT110I	CYCGRG	1 cut(s)	393
BmgT120I	GGNCC	2 cut(s)	736, 934
BmiI	GGNNCC	6 cut(s)	308, 435, 738, 880, 904, 935
BmrFI	CCNGG	5 cut(s)	354, 417, 708, 725, 741
BmsI	GCATC	2 cut(s)	268, 310
Bpu10I	CCTNAGC	1 cut(s)	293
BsaJI	CCNNGG	3 cut(s)	707, 723, 739
BsaWI	WCCGGW	1 cut(s)	638
Bsc4I	CCNNNNNNNGG	2 cut(s)	486, 664
Bse118I	RCCGGY	1 cut(s)	638
Bse3DI	GCAATG	2 cut(s)	79, 974
BseBI	CCWGG	5 cut(s)	354, 417, 708, 725, 741
BseDI	CCNNGG	3 cut(s)	707, 723, 739
BseGI	GGATG	1 cut(s)	230
BseLI	CCNNNNNNNGG	2 cut(s)	486, 664
BseMI	GCAATG	2 cut(s)	79, 974
BseMII	CTCAG	8 cut(s)	23, 36, 75, 161, 261, 486, 825, 963
BseXI	GCAGC	3 cut(s)	166, 183, 310
Bsh1236I	CGCG	2 cut(s)	165, 257
BshFI	GGCC	2 cut(s)	59, 479
BshNI	GGYRCC	1 cut(s)	902
BshTI	ACCGGT	1 cut(s)	638
BsiHKAI	GWGCWC	1 cut(s)	976
BsiHKCI	CYCGRG	1 cut(s)	393
BsiSI	CCGG	1 cut(s)	639
BslFI	GGGAC	1 cut(s)	725
BslI	CCNNNNNNNGG	2 cut(s)	486, 664
BsmAI	GTCTC	3 cut(s)	390, 642, 830
BsmBI	CGTCTC	1 cut(s)	390
BsmFI	GGGAC	1 cut(s)	725
BsmI	GAATGC	1 cut(s)	414
BsnI	GGCC	2 cut(s)	59, 479
BsoBI	CYCGRG	1 cut(s)	393
Bsp1286I	GDGCHC	1 cut(s)	976
Bsp1407I	TGTACA	1 cut(s)	627
Bsp143I	GATC	1 cut(s)	419
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	2 cut(s)	59, 479
BspCNI	CTCAG	8 cut(s)	22, 35, 74, 160, 262, 485, 826, 962
BspFNI	CGCG	2 cut(s)	165, 257
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	6 cut(s)	308, 435, 738, 880, 904, 935
BspMAI	CTGCAG	1 cut(s)	337
BspPI	GGATC	1 cut(s)	427
BspQI	GCTCTTC	1 cut(s)	825
BspT107I	GGYRCC	1 cut(s)	902
BspTI	CTTAAG	2 cut(s)	298, 481
BsrDI	GCAATG	2 cut(s)	79, 974
BsrFI	RCCGGY	1 cut(s)	638
BsrGI	TGTACA	1 cut(s)	627
BssAI	RCCGGY	1 cut(s)	638
BssECI	CCNNGG	3 cut(s)	707, 723, 739
BssMI	GATC	1 cut(s)	419
Bst2UI	CCWGG	5 cut(s)	354, 417, 708, 725, 741
Bst6I	CTCTTC	3 cut(s)	451, 787, 825
BstAFI	CTTAAG	2 cut(s)	298, 481
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstAUI	TGTACA	1 cut(s)	627
BstC8I	GCNNGC	2 cut(s)	259, 861
BstEII	GGTNACC	1 cut(s)	489
BstF5I	GGATG	1 cut(s)	230
BstFNI	CGCG	2 cut(s)	165, 257
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	2 cut(s)	167, 269
BstKTI	GATC	1 cut(s)	422
BstMAI	GTCTC	3 cut(s)	390, 642, 830
BstMBI	GATC	1 cut(s)	419
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 332, 389, 398, 533
BstNI	CCWGG	5 cut(s)	354, 417, 708, 725, 741
BstNSI	RCATGY	1 cut(s)	114
BstPI	GGTNACC	1 cut(s)	489
BstSCI	CCNGG	5 cut(s)	352, 415, 706, 723, 739
BstSFI	CTRYAG	1 cut(s)	333
BstUI	CGCG	2 cut(s)	165, 257
BstV1I	GCAGC	3 cut(s)	166, 183, 310
BstXI	CCANNNNNNTGG	1 cut(s)	724
BsuRI	GGCC	2 cut(s)	59, 479
BtsCI	GGATG	1 cut(s)	230
BtsI	GCAGTG	1 cut(s)	601
BtsIMutI	CAGTG	1 cut(s)	601
Cac8I	GCNNGC	2 cut(s)	259, 861
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	2 cut(s)	167, 269
Cfr10I	RCCGGY	1 cut(s)	638
Cfr13I	GGNCC	2 cut(s)	736, 934
CseI	GACGC	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	628
CspAI	ACCGGT	1 cut(s)	638
CviAII	CATG	4 cut(s)	111, 206, 311, 872
CviQI	GTAC	1 cut(s)	628
DpnI	GATC	1 cut(s)	421
DpnII	GATC	1 cut(s)	419
Eam1104I	CTCTTC	3 cut(s)	451, 787, 825
EarI	CTCTTC	3 cut(s)	451, 787, 825
Eco147I	AGGCCT	1 cut(s)	479
Eco32I	GATATC	1 cut(s)	376
Eco47I	GGWCC	2 cut(s)	736, 934
Eco47III	AGCGCT	1 cut(s)	268
Eco57I	CTGAAG	2 cut(s)	52, 710
Eco88I	CYCGRG	1 cut(s)	393
Eco91I	GGTNACC	1 cut(s)	489
EcoO109I	RGGNCCY	1 cut(s)	934
EcoO65I	GGTNACC	1 cut(s)	489
EcoRI	GAATTC	1 cut(s)	247
EcoRII	CCWGG	5 cut(s)	352, 415, 706, 723, 739
EcoRV	GATATC	1 cut(s)	376
Esp3I	CGTCTC	1 cut(s)	390
FaeI	CATG	4 cut(s)	114, 209, 314, 875
FaqI	GGGAC	1 cut(s)	725
FatI	CATG	4 cut(s)	110, 205, 310, 871
Fnu4HI	GCNGC	3 cut(s)	180, 197, 324
FokI	GGATG	1 cut(s)	237
Fsp4HI	GCNGC	3 cut(s)	180, 197, 324
FspBI	CTAG	1 cut(s)	563
GlaI	GCGC	2 cut(s)	166, 268
GluI	GCNGC	3 cut(s)	180, 197, 324
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	59, 479
HapII	CCGG	1 cut(s)	639
HgaI	GACGC	1 cut(s)	407
HhaI	GCGC	2 cut(s)	167, 269
Hin1II	CATG	4 cut(s)	114, 209, 314, 875
Hin6I	GCGC	2 cut(s)	165, 267
HinP1I	GCGC	2 cut(s)	165, 267
HindIII	AAGCTT	3 cut(s)	14, 295, 745
HinfI	GANTC	2 cut(s)	608, 812
HpaII	CCGG	1 cut(s)	639
HphI	GGTGA	2 cut(s)	628, 965
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188I	TCNGA	6 cut(s)	12, 64, 438, 475, 593, 811
Hpy188III	TCNNGA	4 cut(s)	206, 395, 576, 824
Hpy8I	GTNNAC	1 cut(s)	469
HpyAV	CCTTC	1 cut(s)	895
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	4 cut(s)	199, 281, 335, 506
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 332, 389, 398, 533
HpySE526I	ACGT	1 cut(s)	445
Hsp92II	CATG	4 cut(s)	114, 209, 314, 875
HspAI	GCGC	2 cut(s)	165, 267
Kzo9I	GATC	1 cut(s)	419
LguI	GCTCTTC	1 cut(s)	825
LmnI	GCTCC	2 cut(s)	187, 878
Lsp1109I	GCAGC	3 cut(s)	166, 183, 310
LweI	GCATC	2 cut(s)	268, 310
MaeI	CTAG	1 cut(s)	563
MaeII	ACGT	1 cut(s)	445
MaeIII	GTNAC	1 cut(s)	489
MalI	GATC	1 cut(s)	421
MboI	GATC	1 cut(s)	419
MboII	GAAGA	5 cut(s)	468, 703, 776, 804, 812
MhlI	GDGCHC	1 cut(s)	976
MluCI	AATT	5 cut(s)	247, 530, 631, 662, 982
MmeI	TCCRAC	1 cut(s)	461
MseI	TTAA	5 cut(s)	191, 299, 482, 555, 981
MslI	CAYNNNNRTG	1 cut(s)	204
MspCI	CTTAAG	2 cut(s)	298, 481
MspI	CCGG	1 cut(s)	639
MspR9I	CCNGG	5 cut(s)	354, 417, 708, 725, 741
Mva1269I	GAATGC	1 cut(s)	414
MvaI	CCWGG	5 cut(s)	354, 417, 708, 725, 741
MvnI	CGCG	2 cut(s)	165, 257
MwoI	GCNNNNNNNGC	5 cut(s)	134, 332, 389, 398, 533
NdeII	GATC	1 cut(s)	419
NlaIII	CATG	4 cut(s)	114, 209, 314, 875
NlaIV	GGNNCC	6 cut(s)	308, 435, 738, 880, 904, 935
NmeAIII	GCCGAG	1 cut(s)	664
NspI	RCATGY	1 cut(s)	114
PaeR7I	CTCGAG	1 cut(s)	393
PagI	TCATGA	1 cut(s)	205
PceI	AGGCCT	1 cut(s)	479
PciSI	GCTCTTC	1 cut(s)	825
PctI	GAATGC	1 cut(s)	414
PfeI	GAWTC	2 cut(s)	608, 812
PfoI	TCCNGGA	1 cut(s)	415
PinAI	ACCGGT	1 cut(s)	638
PkrI	GCNGC	3 cut(s)	181, 198, 325
PpuMI	RGGWCCY	1 cut(s)	934
Psp5II	RGGWCCY	1 cut(s)	934
Psp6I	CCWGG	5 cut(s)	352, 415, 706, 723, 739
PspEI	GGTNACC	1 cut(s)	489
PspGI	CCWGG	5 cut(s)	352, 415, 706, 723, 739
PspN4I	GGNNCC	6 cut(s)	308, 435, 738, 880, 904, 935
PspPI	GGNCC	2 cut(s)	736, 934
PspPPI	RGGWCCY	1 cut(s)	934
PstI	CTGCAG	1 cut(s)	337
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
RseI	CAYNNNNRTG	1 cut(s)	204
SapI	GCTCTTC	1 cut(s)	825
SaqAI	TTAA	5 cut(s)	191, 299, 482, 555, 981
SatI	GCNGC	3 cut(s)	180, 197, 324
Sau3AI	GATC	1 cut(s)	419
Sau96I	GGNCC	2 cut(s)	736, 934
ScrFI	CCNGG	5 cut(s)	354, 417, 708, 725, 741
SduI	GDGCHC	1 cut(s)	976
SfaNI	GCATC	2 cut(s)	268, 310
SfcI	CTRYAG	1 cut(s)	333
Sfr274I	CTCGAG	1 cut(s)	393
SinI	GGWCC	2 cut(s)	736, 934
SlaI	CTCGAG	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	3 cut(s)	298, 393, 481
SmoI	CTYRAG	3 cut(s)	298, 393, 481
Sse9I	AATT	5 cut(s)	247, 530, 631, 662, 982
SseBI	AGGCCT	1 cut(s)	479
SsiI	CCGC	1 cut(s)	255
SspMI	CTAG	1 cut(s)	563
StuI	AGGCCT	1 cut(s)	479
StyD4I	CCNGG	5 cut(s)	352, 415, 706, 723, 739
TaiI	ACGT	1 cut(s)	448
TaqI	TCGA	1 cut(s)	394
TasI	AATT	5 cut(s)	247, 530, 631, 662, 982
TatI	WGTACW	1 cut(s)	627
TfiI	GAWTC	2 cut(s)	608, 812
Tru1I	TTAA	5 cut(s)	191, 299, 482, 555, 981
Tru9I	TTAA	5 cut(s)	191, 299, 482, 555, 981
TscAI	CASTG	1 cut(s)	608
TseI	GCWGC	3 cut(s)	179, 196, 323
TspDTI	ATGAA	2 cut(s)	194, 777
TspRI	CASTG	1 cut(s)	608
Vha464I	CTTAAG	2 cut(s)	298, 481
VpaK11BI	GGWCC	2 cut(s)	736, 934
XapI	RAATTY	2 cut(s)	247, 530
XceI	RCATGY	1 cut(s)	114
XhoI	CTCGAG	1 cut(s)	393
XspI	CTAG	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.