Rh2CG529600

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0007613
Physical Location & Seq
Forward (+)
70523736 .. 70526778
3043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG529600.1

Sequence Viewer

Length: 834 bp
ATGGCTATTCATCAAAAGCTTCTCTCAGTTTTTGTCTTGCTTTTTCTGTTGGCTTTCAACTTGAGCGATGCGCAGAACTTGAAAGTTCGGTTCTACCATAAAACATGCCCAAATCTGGAGGCCATTGTTGCAGCGACTACTAATCAGCACATATCTCGGGCACCAACACTTGCTGCTCCTTTGTTGAGGATGCATTTTCATGATTGCTTTGTTAGGGGATGTGATGGCTCTGTGCTAATTAATTCAACAGCAAGCAATCAAGCAGAGAAAGCAAATACCGCCAACCTGAGCTTGAGAGGATTCCATGTCATTGACGCTGTAAAATCTGCAGTAGAAAAGAAGTGTCCCGGCATTGTCTCCTGTGCAGATATCTTGGCGTTGGTAGCACGTGATGCAGTAGCATTTCTTCATCATGGTGCATTTTGGCAAGTTCCAACAGGACGTAGAGATGGGAAAGTGTCCTTAGCCTCAGAGGCCGCAAGAAACTTACCTCCTCCATTTGCCAACATTACTCAGCTAAAAGCAATGTTTAGGGGAAAGGGTTTAAGTGTTAAAGACCTTGCGGTTCTATCAGGAGGGCATACAATTGGAACATCTCACTGTGGACCCGTCACAAATCGATTGTACAACTTCACTGGCCGCGGTGATACAGACCCGAGTTTGGACAAAAATTACATTGCACAGTTGAAGATCAAATGCAAACGAGGAGATATCACTACCACCATTTTGGAGATGGACCCCGGAAGCTTCAAGACGTTTGATGAAGATTACTACACTGTAGTCTCTCAAAGAAGAGGGCTTTTCCAATCTGATCGATGCTGCTCTTCTCGATGA

Protein Analysis

277

Amino Acids

30.29

Weight (kDa)

9.34

Isoelectric Point (pI)

29.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 44 - 273 1.9e-75 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 72
AccB1I GGYRCC 1 cut(s) 160
AccII CGCG 1 cut(s) 642
AciI CCGC 5 cut(s) 279, 477, 563, 640, 642
AcoI YGGCCR 1 cut(s) 637
AcvI CACGTG 1 cut(s) 389
AfaI GTAC 1 cut(s) 626
AfiI CCNNNNNNNGG 2 cut(s) 115, 661
AgsI TTSAA 5 cut(s) 58, 82, 246, 688, 751
AluBI AGCT 4 cut(s) 19, 291, 517, 747
AluI AGCT 4 cut(s) 19, 291, 517, 747
Alw26I GTCTC 2 cut(s) 361, 787
Ama87I CYCGRG 2 cut(s) 156, 655
AoxI GGCC 3 cut(s) 120, 474, 637
ApeKI GCWGC 3 cut(s) 131, 173, 819
AseI ATTAAT 1 cut(s) 240
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 2 cut(s) 605, 736
AsuC2I CCSGG 2 cut(s) 348, 741
AsuHPI GGTGA 1 cut(s) 656
AvaI CYCGRG 2 cut(s) 156, 655
AvaII GGWCC 2 cut(s) 605, 736
BaeGI GKGCMC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 160
BarI GAAGNNNNNNTAC 2 cut(s) 390, 422
BbrPI CACGTG 1 cut(s) 389
BbvI GCAGC 3 cut(s) 143, 160, 806
BccI CCATC 3 cut(s) 218, 443, 727
BcgI CGANNNNNNTGC 2 cut(s) 137, 171
BcnI CCSGG 2 cut(s) 348, 741
BcoDI GTCTC 2 cut(s) 361, 787
BfmI CTRYAG 2 cut(s) 327, 777
BglI GCCNNNNNGGC 1 cut(s) 473
BisI GCNGC 5 cut(s) 132, 174, 477, 640, 820
BlsI GCNGC 5 cut(s) 133, 175, 478, 641, 821
Bme1390I CCNGG 2 cut(s) 348, 741
Bme18I GGWCC 2 cut(s) 605, 736
BmeT110I CYCGRG 2 cut(s) 156, 655
BmgT120I GGNCC 2 cut(s) 605, 736
BmiI GGNNCC 3 cut(s) 162, 607, 738
BmrFI CCNGG 2 cut(s) 348, 741
BmsI GCATC 4 cut(s) 58, 180, 382, 806
BpmI CTGGAG 1 cut(s) 137
Bpu10I CCTNAGC 2 cut(s) 287, 463
BpuEI CTTGAG 2 cut(s) 82, 313
BpuMI CCSGG 2 cut(s) 348, 741
Bsa29I ATCGAT 2 cut(s) 619, 814
BsaAI YACGTR 1 cut(s) 389
BsaJI CCNNGG 2 cut(s) 640, 739
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 661
Bse1I ACTGG 1 cut(s) 640
Bse3DI GCAATG 2 cut(s) 531, 675
BseCI ATCGAT 2 cut(s) 619, 814
BseDI CCNNGG 2 cut(s) 640, 739
BseGI GGATG 2 cut(s) 195, 224
BseLI CCNNNNNNNGG 2 cut(s) 115, 661
BseMI GCAATG 2 cut(s) 531, 675
BseMII CTCAG 4 cut(s) 39, 278, 483, 527
BseNI ACTGG 1 cut(s) 640
BseRI GAGGAG 2 cut(s) 483, 720
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 3 cut(s) 143, 160, 806
BsgI GTGCAG 1 cut(s) 384
Bsh1236I CGCG 1 cut(s) 642
BshFI GGCC 3 cut(s) 122, 476, 639
BshNI GGYRCC 1 cut(s) 160
BshVI ATCGAT 2 cut(s) 619, 814
BsiHKCI CYCGRG 2 cut(s) 156, 655
BsiSI CCGG 2 cut(s) 348, 741
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 2 cut(s) 115, 661
BsmAI GTCTC 2 cut(s) 361, 787
BsmFI GGGAC 1 cut(s) 330
BsnI GGCC 3 cut(s) 122, 476, 639
BsoBI CYCGRG 2 cut(s) 156, 655
Bsp1286I GDGCHC 1 cut(s) 163
Bsp1407I TGTACA 1 cut(s) 624
Bsp143I GATC 2 cut(s) 690, 811
BspACI CCGC 5 cut(s) 279, 477, 563, 640, 642
BspANI GGCC 3 cut(s) 122, 476, 639
BspCNI CTCAG 4 cut(s) 38, 279, 482, 526
BspDI ATCGAT 2 cut(s) 619, 814
BspFNI CGCG 1 cut(s) 642
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 3 cut(s) 162, 607, 738
BspMAI CTGCAG 1 cut(s) 331
BspQI GCTCTTC 1 cut(s) 829
BspT107I GGYRCC 1 cut(s) 160
BsrDI GCAATG 2 cut(s) 531, 675
BsrGI TGTACA 1 cut(s) 624
BsrI ACTGG 1 cut(s) 640
BssECI CCNNGG 2 cut(s) 640, 739
BssMI GATC 2 cut(s) 690, 811
Bst4CI ACNGT 3 cut(s) 602, 684, 778
Bst6I CTCTTC 2 cut(s) 787, 829
BstAPI GCANNNNNTGC 1 cut(s) 392
BstAUI TGTACA 1 cut(s) 624
BstBAI YACGTR 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 5 cut(s) 25, 287, 463, 469, 513
BstDSI CCRYGG 1 cut(s) 640
BstF5I GGATG 2 cut(s) 195, 224
BstFNI CGCG 1 cut(s) 642
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 2 cut(s) 693, 814
BstMAI GTCTC 2 cut(s) 361, 787
BstMBI GATC 2 cut(s) 690, 811
BstMWI GCNNNNNNNGC 6 cut(s) 128, 269, 278, 383, 392, 473
BstNSI RCATGY 1 cut(s) 108
BstSCI CCNGG 2 cut(s) 346, 739
BstSFI CTRYAG 2 cut(s) 327, 777
BstSLI GKGCMC 1 cut(s) 163
BstUI CGCG 1 cut(s) 642
BstV1I GCAGC 3 cut(s) 143, 160, 806
BstXI CCANNNNNNTGG 1 cut(s) 727
Bsu15I ATCGAT 2 cut(s) 619, 814
BsuRI GGCC 3 cut(s) 122, 476, 639
BsuTUI ATCGAT 2 cut(s) 619, 814
BtgI CCRYGG 1 cut(s) 640
BtgZI GCGATG 1 cut(s) 81
BtsCI GGATG 2 cut(s) 195, 224
BtsIMutI CAGTG 3 cut(s) 598, 633, 774
Cac8I GCNNGC 1 cut(s) 253
CciI TCATGA 1 cut(s) 199
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 605, 736
Cfr42I CCGCGG 1 cut(s) 643
ClaI ATCGAT 2 cut(s) 619, 814
CseI GACGC 1 cut(s) 323
Csp6I GTAC 1 cut(s) 625
CviAII CATG 4 cut(s) 105, 200, 305, 413
CviQI GTAC 1 cut(s) 625
DdeI CTNAG 5 cut(s) 25, 287, 463, 469, 513
DpnI GATC 2 cut(s) 692, 813
DpnII GATC 2 cut(s) 690, 811
EaeI YGGCCR 1 cut(s) 637
Eam1104I CTCTTC 2 cut(s) 787, 829
EarI CTCTTC 2 cut(s) 787, 829
Eco32I GATATC 2 cut(s) 370, 712
Eco47I GGWCC 2 cut(s) 605, 736
Eco72I CACGTG 1 cut(s) 389
Eco88I CYCGRG 2 cut(s) 156, 655
EcoRV GATATC 2 cut(s) 370, 712
EcoT22I ATGCAT 1 cut(s) 195
FaeI CATG 4 cut(s) 108, 203, 308, 416
FaiI YATR 7 cut(s) 99, 106, 152, 201, 306, 414, 582
FaqI GGGAC 1 cut(s) 330
FatI CATG 4 cut(s) 104, 199, 304, 412
Fnu4HI GCNGC 5 cut(s) 132, 174, 477, 640, 820
FokI GGATG 2 cut(s) 202, 231
Fsp4HI GCNGC 5 cut(s) 132, 174, 477, 640, 820
FspI TGCGCA 1 cut(s) 72
GlaI GCGC 1 cut(s) 72
GluI GCNGC 5 cut(s) 132, 174, 477, 640, 820
GsuI CTGGAG 1 cut(s) 137
HaeIII GGCC 3 cut(s) 122, 476, 639
HapII CCGG 2 cut(s) 348, 741
HgaI GACGC 1 cut(s) 323
HhaI GCGC 1 cut(s) 73
Hin1II CATG 4 cut(s) 108, 203, 308, 416
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HindIII AAGCTT 2 cut(s) 17, 745
HinfI GANTC 1 cut(s) 300
HpaII CCGG 2 cut(s) 348, 741
HphI GGTGA 1 cut(s) 656
Hpy166II GTNNAC 1 cut(s) 605
Hpy188I TCNGA 2 cut(s) 472, 811
Hpy188III TCNNGA 5 cut(s) 116, 200, 573, 751, 828
Hpy8I GTNNAC 1 cut(s) 605
HpyCH4III ACNGT 3 cut(s) 602, 684, 778
HpyCH4IV ACGT 3 cut(s) 388, 442, 755
HpyCH4V TGCA 8 cut(s) 131, 193, 329, 365, 395, 419, 680, 699
HpyF10VI GCNNNNNNNGC 6 cut(s) 128, 269, 278, 383, 392, 473
HpyF3I CTNAG 5 cut(s) 25, 287, 463, 469, 513
HpySE526I ACGT 3 cut(s) 388, 442, 755
Hsp92II CATG 4 cut(s) 108, 203, 308, 416
HspAI GCGC 1 cut(s) 71
KspI CCGCGG 1 cut(s) 643
Kzo9I GATC 2 cut(s) 690, 811
LguI GCTCTTC 1 cut(s) 829
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 8 cut(s) 101, 299, 361, 373, 423, 558, 621, 754
Lsp1109I GCAGC 3 cut(s) 143, 160, 806
LweI GCATC 4 cut(s) 58, 180, 382, 806
MaeII ACGT 3 cut(s) 388, 442, 755
MaeIII GTNAC 1 cut(s) 610
MalI GATC 2 cut(s) 692, 813
MboI GATC 2 cut(s) 690, 811
MboII GAAGA 5 cut(s) 398, 700, 776, 804, 816
MfeI CAATTG 1 cut(s) 585
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 4 cut(s) 237, 241, 585, 670
MmeI TCCRAC 1 cut(s) 458
Mph1103I ATGCAT 1 cut(s) 195
MseI TTAA 3 cut(s) 240, 545, 552
MslI CAYNNNNRTG 2 cut(s) 198, 414
MspA1I CMGCKG 1 cut(s) 642
MspI CCGG 2 cut(s) 348, 741
MspR9I CCNGG 2 cut(s) 348, 741
MunI CAATTG 1 cut(s) 585
MvnI CGCG 1 cut(s) 642
MwoI GCNNNNNNNGC 6 cut(s) 128, 269, 278, 383, 392, 473
NciI CCSGG 2 cut(s) 348, 741
NdeII GATC 2 cut(s) 690, 811
NlaIII CATG 4 cut(s) 108, 203, 308, 416
NlaIV GGNNCC 3 cut(s) 162, 607, 738
NmuCI GTSAC 1 cut(s) 610
NsbI TGCGCA 1 cut(s) 72
NsiI ATGCAT 1 cut(s) 195
NspI RCATGY 1 cut(s) 108
PagI TCATGA 1 cut(s) 199
PciSI GCTCTTC 1 cut(s) 829
PfeI GAWTC 1 cut(s) 300
PkrI GCNGC 5 cut(s) 133, 175, 478, 641, 821
PmaCI CACGTG 1 cut(s) 389
PmlI CACGTG 1 cut(s) 389
Ppu21I YACGTR 1 cut(s) 389
PshBI ATTAAT 1 cut(s) 240
PspCI CACGTG 1 cut(s) 389
PspN4I GGNNCC 3 cut(s) 162, 607, 738
PspPI GGNCC 2 cut(s) 605, 736
PstI CTGCAG 1 cut(s) 331
RsaI GTAC 1 cut(s) 626
RsaNI GTAC 1 cut(s) 625
RseI CAYNNNNRTG 2 cut(s) 198, 414
SacII CCGCGG 1 cut(s) 643
SapI GCTCTTC 1 cut(s) 829
SaqAI TTAA 3 cut(s) 240, 545, 552
SatI GCNGC 5 cut(s) 132, 174, 477, 640, 820
Sau3AI GATC 2 cut(s) 690, 811
Sau96I GGNCC 2 cut(s) 605, 736
ScrFI CCNGG 2 cut(s) 348, 741
SduI GDGCHC 1 cut(s) 163
SfaNI GCATC 4 cut(s) 58, 180, 382, 806
SfcI CTRYAG 2 cut(s) 327, 777
Sfr303I CCGCGG 1 cut(s) 643
SgrBI CCGCGG 1 cut(s) 643
SinI GGWCC 2 cut(s) 605, 736
SmiMI CAYNNNNRTG 2 cut(s) 198, 414
SmlI CTYRAG 2 cut(s) 61, 292
SmoI CTYRAG 2 cut(s) 61, 292
Sse9I AATT 4 cut(s) 237, 241, 585, 670
SsiI CCGC 5 cut(s) 279, 477, 563, 640, 642
StyD4I CCNGG 2 cut(s) 346, 739
TaaI ACNGT 3 cut(s) 602, 684, 778
TaiI ACGT 3 cut(s) 391, 445, 758
TaqI TCGA 3 cut(s) 619, 814, 829
TasI AATT 4 cut(s) 237, 241, 585, 670
TatI WGTACW 1 cut(s) 624
TauI GCSGC 2 cut(s) 479, 642
TfiI GAWTC 1 cut(s) 300
Tru1I TTAA 3 cut(s) 240, 545, 552
Tru9I TTAA 3 cut(s) 240, 545, 552
TscAI CASTG 3 cut(s) 605, 640, 781
TseFI GTSAC 1 cut(s) 610
TseI GCWGC 3 cut(s) 131, 173, 819
Tsp45I GTSAC 1 cut(s) 610
TspDTI ATGAA 3 cut(s) 188, 398, 777
TspRI CASTG 3 cut(s) 605, 640, 781
VpaK11BI GGWCC 2 cut(s) 605, 736
VspI ATTAAT 1 cut(s) 240
XceI RCATGY 1 cut(s) 108
XcmI CCANNNNNNNNNTGG 1 cut(s) 730
Zsp2I ATGCAT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.