Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007613

Physical Location & Seq

Genomic Coordinates Reverse (-)

61048788 .. 61050334

Gene Structure 1547 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0479500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAGGTTTCTGCACAACTTGGGTTTCTTCTGTATTCTTTTTCTTGTTTCACCACTTTTCACTTCATCCCATGAACATGTGAAAGGTGTAAGCAATCACAAAGAACACATTCATAAGCACATGAGTCGCAAACTATCATTCGAAATTACGCTTCATGGGTTTCTGCTTTGGGCTTCAATGGGGTTCTTGATGCCGGTAGGACTACTGGCCATTAGAATGTCACACAGAGTGCAATGTAGAAGAAGACTCAGAATTCTGTTCTACGTTCATGCTTTATCTGAGATACTCTCTCTACTTCTTTCAACAGCAGGAGCTGTAATGTCCTTCAGAAACTTCAACAACTCCTTCAACAATAGGCACCAAAGGATTGGGGTTGGCCTCTATGGTCTGATATGGCTGCAAGCTCTAATCGGCATTGTAAGGCCACAAAGGGGGTCCAAAGGAAGAAGCATGTGGTTTTTGGTGCATTGGATGCTTGGAACTGCAATATCTCTGCTTGGGGTACTCAACATATACACAGGTTTAGTAGCCTACCATGAGAAGACATCAAAAGGCATAAAGTTTTGGACCATAGTTTTCACAGCTGAAGTATGTTTCATTACCTTCTTCTACCTGTTCCAAGACAAATGGGTTTATATACAAAAGCAAGGAGTGAGTTTGGGTAATGAATCAAAAGGGGCCACCACAGATCAAGTGCTTTTGCCAAGAGACAAGCAAAAGGAAGTTGCCCTGGCAGAGTCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006725 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009698 GO:0009808 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0019748 GO:0030054 GO:0030312 GO:0042221 GO:0044237 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1901360 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

248

Amino Acids

28.47

Weight (kDa)

10.14

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cytochrom_B561	PF03188	51 - 175	1.1e-08	Eukaryotic cytochrome b561

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05240 AT1G05250
fragaria_vesca	FvH4_6g43490
malus_domestica	MD09G1106000.v1.1 MD17G1093700.v1.1
prunus_persica	Prupe.3G219600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0159961 RchiOBHm_Chr2g0159971
rosa_laevigata	RLG00000021188 RLG00000021190
rosa_multiflora	Rmu_sc0006940.1_g000002
rosa_roxburghii	Rroxscaffold_2G00090110 Rroxscaffold_2G00090120
rosa_rugosa	Rorug02G0479500 Rorug02G0479600
rosa_samantha	Rh2AG546100 Rh2AG546200 Rh2BG559400 Rh2BG559500 Rh2CG529500 Rh2CG529600 Rh2DG568100 Rh2DG568200
rosa_wichuraiana	Rw2G045170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	357
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	252
AcuI	CTGAAG	2 cut(s)	310, 606
AdeI	CACNNNGTG	1 cut(s)	229
AfaI	GTAC	1 cut(s)	504
AfiI	CCNNNNNNNGG	1 cut(s)	431
AflIII	ACRYGT	1 cut(s)	76
AgsI	TTSAA	4 cut(s)	177, 303, 337, 349
AjnI	CCWGG	1 cut(s)	729
AluBI	AGCT	3 cut(s)	314, 404, 584
AluI	AGCT	3 cut(s)	314, 404, 584
Alw26I	GTCTC	1 cut(s)	702
AlwNI	CAGNNNCTG	1 cut(s)	314
AoxI	GGCC	4 cut(s)	207, 376, 422, 678
ApeKI	GCWGC	1 cut(s)	397
ApoI	RAATTY	1 cut(s)	252
Asp700I	GAANNNNTTC	1 cut(s)	108
AspS9I	GGNCC	3 cut(s)	435, 567, 678
AsuHPI	GGTGA	1 cut(s)	42
AsuII	TTCGAA	1 cut(s)	141
AvaII	GGWCC	2 cut(s)	435, 567
BalI	TGGCCA	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	357
BbsI	GAAGAC	2 cut(s)	250, 548
BbvI	GCAGC	1 cut(s)	384
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciT130I	CCWGG	1 cut(s)	731
BcoDI	GTCTC	1 cut(s)	702
BisI	GCNGC	1 cut(s)	398
BlsI	GCNGC	1 cut(s)	399
Bme1390I	CCNGG	1 cut(s)	731
Bme18I	GGWCC	2 cut(s)	435, 567
BmgT120I	GGNCC	3 cut(s)	435, 567, 678
BmiI	GGNNCC	3 cut(s)	359, 436, 679
BmrFI	CCNGG	1 cut(s)	731
BmsI	GCATC	2 cut(s)	180, 462
BpiI	GAAGAC	2 cut(s)	250, 548
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
Bpu14I	TTCGAA	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	729
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	731
BseDI	CCNNGG	1 cut(s)	729
BseGI	GGATG	2 cut(s)	65, 477
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMI	GCAATG	1 cut(s)	239
BseMII	CTCAG	2 cut(s)	262, 270
BseNI	ACTGG	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	384
BshFI	GGCC	4 cut(s)	209, 378, 424, 680
BshNI	GGYRCC	1 cut(s)	357
BsiSI	CCGG	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmAI	GTCTC	1 cut(s)	702
BsnI	GGCC	4 cut(s)	209, 378, 424, 680
Bsp119I	TTCGAA	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	688
BspANI	GGCC	4 cut(s)	209, 378, 424, 680
BspCNI	CTCAG	2 cut(s)	261, 271
BspLI	GGNNCC	3 cut(s)	359, 436, 679
BspT104I	TTCGAA	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	210
BssAI	RCCGGY	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	729
BssMI	GATC	1 cut(s)	688
Bst2UI	CCWGG	1 cut(s)	731
BstAPI	GCANNNNNTGC	1 cut(s)	472
BstBI	TTCGAA	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	2 cut(s)	248, 279
BstF5I	GGATG	2 cut(s)	65, 477
BstKTI	GATC	1 cut(s)	691
BstMAI	GTCTC	1 cut(s)	702
BstMBI	GATC	1 cut(s)	688
BstMWI	GCNNNNNNNGC	1 cut(s)	472
BstNI	CCWGG	1 cut(s)	731
BstNSI	RCATGY	2 cut(s)	80, 454
BstSCI	CCNGG	1 cut(s)	729
BstV1I	GCAGC	1 cut(s)	384
BstV2I	GAAGAC	2 cut(s)	250, 548
BstXI	CCANNNNNNTGG	1 cut(s)	368
BsuRI	GGCC	4 cut(s)	209, 378, 424, 680
BtsCI	GGATG	2 cut(s)	65, 477
Cac8I	GCNNGC	1 cut(s)	402
CaiI	CAGNNNCTG	1 cut(s)	314
Cfr10I	RCCGGY	1 cut(s)	193
Cfr13I	GGNCC	3 cut(s)	435, 567, 678
Csp6I	GTAC	1 cut(s)	503
CviAII	CATG	7 cut(s)	71, 77, 121, 155, 269, 451, 536
CviQI	GTAC	1 cut(s)	503
DdeI	CTNAG	2 cut(s)	248, 279
DpnI	GATC	1 cut(s)	690
DpnII	GATC	1 cut(s)	688
DraIII	CACNNNGTG	1 cut(s)	229
EaeI	YGGCCR	1 cut(s)	207
Eco47I	GGWCC	2 cut(s)	435, 567
Eco57I	CTGAAG	2 cut(s)	310, 606
EcoRI	GAATTC	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	729
FaeI	CATG	7 cut(s)	74, 80, 124, 158, 272, 454, 539
FatI	CATG	7 cut(s)	70, 76, 120, 154, 268, 450, 535
Fnu4HI	GCNGC	1 cut(s)	398
FokI	GGATG	2 cut(s)	52, 484
Fsp4HI	GCNGC	1 cut(s)	398
GluI	GCNGC	1 cut(s)	398
HaeIII	GGCC	4 cut(s)	209, 378, 424, 680
HapII	CCGG	1 cut(s)	194
Hin1II	CATG	7 cut(s)	74, 80, 124, 158, 272, 454, 539
HinfI	GANTC	4 cut(s)	124, 246, 668, 737
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	1 cut(s)	42
Hpy188I	TCNGA	4 cut(s)	251, 280, 329, 390
Hpy188III	TCNNGA	1 cut(s)	187
HpyAV	CCTTC	3 cut(s)	334, 355, 613
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	5 cut(s)	13, 232, 400, 466, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	472
HpyF3I	CTNAG	2 cut(s)	248, 279
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	7 cut(s)	74, 80, 124, 158, 272, 454, 539
Kzo9I	GATC	1 cut(s)	688
LmnI	GCTCC	1 cut(s)	311
LpnPI	CCDG	7 cut(s)	191, 207, 294, 504, 626, 716, 743
Lsp1109I	GCAGC	1 cut(s)	384
LweI	GCATC	2 cut(s)	180, 462
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	1 cut(s)	690
MboI	GATC	1 cut(s)	688
MboII	GAAGA	6 cut(s)	19, 252, 255, 456, 553, 598
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	2 cut(s)	144, 252
MluNI	TGGCCA	1 cut(s)	209
MlyI	GAGTC	3 cut(s)	133, 240, 746
MnlI	CCTC	1 cut(s)	389
Mox20I	TGGCCA	1 cut(s)	209
MroXI	GAANNNNTTC	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	1 cut(s)	745
MslI	CAYNNNNRTG	2 cut(s)	75, 215
Msp20I	TGGCCA	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	731
MvaI	CCWGG	1 cut(s)	731
MwoI	GCNNNNNNNGC	1 cut(s)	472
NdeII	GATC	1 cut(s)	688
NlaIII	CATG	7 cut(s)	74, 80, 124, 158, 272, 454, 539
NlaIV	GGNNCC	3 cut(s)	359, 436, 679
NmuCI	GTSAC	1 cut(s)	219
NspI	RCATGY	2 cut(s)	80, 454
NspV	TTCGAA	1 cut(s)	141
PciI	ACATGT	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	668
PkrI	GCNGC	1 cut(s)	399
PleI	GAGTC	3 cut(s)	132, 240, 745
PpsI	GAGTC	3 cut(s)	132, 240, 745
PscI	ACATGT	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	729
PspGI	CCWGG	1 cut(s)	729
PspN4I	GGNNCC	3 cut(s)	359, 436, 679
PspPI	GGNCC	3 cut(s)	435, 567, 678
PstNI	CAGNNNCTG	1 cut(s)	314
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	1 cut(s)	504
RsaNI	GTAC	1 cut(s)	503
RseI	CAYNNNNRTG	2 cut(s)	75, 215
SaqAI	TTAA	1 cut(s)	745
SatI	GCNGC	1 cut(s)	398
Sau3AI	GATC	1 cut(s)	688
Sau96I	GGNCC	3 cut(s)	435, 567, 678
SchI	GAGTC	3 cut(s)	133, 240, 746
ScrFI	CCNGG	1 cut(s)	731
SetI	ASST	9 cut(s)	8, 88, 267, 316, 406, 523, 586, 605, 615
SfaNI	GCATC	2 cut(s)	180, 462
SfuI	TTCGAA	1 cut(s)	141
SinI	GGWCC	2 cut(s)	435, 567
SmiMI	CAYNNNNRTG	2 cut(s)	75, 215
Sse9I	AATT	2 cut(s)	144, 252
StyD4I	CCNGG	1 cut(s)	729
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	141
TasI	AATT	2 cut(s)	144, 252
TfiI	GAWTC	1 cut(s)	668
Tru1I	TTAA	1 cut(s)	745
Tru9I	TTAA	1 cut(s)	745
TseFI	GTSAC	1 cut(s)	219
TseI	GCWGC	1 cut(s)	397
Tsp45I	GTSAC	1 cut(s)	219
TspDTI	ATGAA	7 cut(s)	54, 87, 101, 143, 257, 586, 681
VpaK11BI	GGWCC	2 cut(s)	435, 567
XapI	RAATTY	1 cut(s)	252
XceI	RCATGY	2 cut(s)	80, 454
XmnI	GAANNNNTTC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.