Rh2DG568200

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0007613
Physical Location & Seq
Forward (+)
79794479 .. 79796013
1535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG568200.1

Sequence Viewer

Length: 984 bp
ATGGCTATTCATCAAAAGCTTCTCTCAGTTTTTGTCTTGCTTTTTCTGTTGACTTTTAACTTGAGCGATGCGCAGAACTTGAAAGTTCGGTTCTACCATAAAACATGCCCAAATCTGGAGGCCATTGTTGCAGCGACTACTAATCAGTACATATCTCGGGCACCAACACTTGCTGCTCCTTTGTTGAGGATGCATTTTCATGATTGCTTTGTTAGGGGATGTGATGGCTCTGTGCTAATTAATTCAACAGCAAGCAATCAAGCAGAGAAAGCAAATACCGCCAACCTGAGCTTGAGAGGGTTCCATGTCATTGACGCTGTAAAGTCTGCAGTAGAAAAGAAGTGTCCCGGCATTGTTTCCTGTGCAGATATCTTGGCGTTGGTAGCACGTGATGCAGTAGGATTTCTTCATCATGGTGCATTTTGGCAAGTTCCAACAGGACGTAGAGATGGGAGAGTGTCCTTAGCCTCAGAGGCCGCAAGAAACTTACCTCCTCCATTTGCCAACATTACTCAGCTAAAAGCAATGTTTAGCGGAAAGGGTTTAAGTGTTAAAGACCTTGCGGTTCTATCAGGAGGGCATACAATTGGAACATCTCACTGTGGACCCGTCACAAATCGATTGTACAACTTCACTGGCCGCGGTGATACAGACCCGAGTTTGGACAAAAATTACATTGCACAGTTGAAGATCAAATGCAAACCAGGAGATATCACTACCACCATTTTGGAGATGGACCCCGGAAGCTTCAAGACGTTTGATGAAGATTACTACACTCAAGTCTCTAAAAGAAGAGGGCTTTTCCAATCTGATGCTGCTCTTCTCGATGACACTGAGACGAAAGCGTACGTGTTACGTCAAGCCACCACTCATGGATCTACATTTCTAAAAGACTTTGCTGCCTCAATGGTGAAGATGGGTAAAATTGGAGTCCTCACTGGCTCAGCTGGTGAAATTAGGAAGCAATGTGCTTTTATTAATTGA

Protein Analysis

327

Amino Acids

35.53

Weight (kDa)

9.22

Isoelectric Point (pI)

26.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 45 - 288 2.4e-80 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 72
AccB1I GGYRCC 1 cut(s) 160
AccII CGCG 1 cut(s) 642
AciI CCGC 6 cut(s) 279, 477, 534, 563, 640, 642
AclWI GGATC 1 cut(s) 883
AcoI YGGCCR 1 cut(s) 637
AcvI CACGTG 1 cut(s) 389
AfaI GTAC 3 cut(s) 149, 626, 848
AfiI CCNNNNNNNGG 2 cut(s) 115, 661
AflIII ACRYGT 1 cut(s) 849
AgsI TTSAA 4 cut(s) 82, 246, 688, 751
AjnI CCWGG 1 cut(s) 703
AluBI AGCT 5 cut(s) 19, 291, 517, 747, 947
AluI AGCT 5 cut(s) 19, 291, 517, 747, 947
Alw26I GTCTC 2 cut(s) 787, 830
AlwI GGATC 1 cut(s) 883
Ama87I CYCGRG 2 cut(s) 156, 655
AoxI GGCC 3 cut(s) 120, 474, 637
ApeKI GCWGC 4 cut(s) 131, 173, 815, 899
AseI ATTAAT 2 cut(s) 240, 978
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 2 cut(s) 605, 736
AsuC2I CCSGG 2 cut(s) 348, 741
AsuHPI GGTGA 3 cut(s) 656, 922, 962
AvaI CYCGRG 2 cut(s) 156, 655
AvaII GGWCC 2 cut(s) 605, 736
BaeGI GKGCMC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 160
BarI GAAGNNNNNNTAC 2 cut(s) 390, 422
BbrPI CACGTG 1 cut(s) 389
BbvI GCAGC 4 cut(s) 143, 160, 802, 886
BccI CCATC 4 cut(s) 218, 443, 727, 910
BciT130I CCWGG 1 cut(s) 705
BcnI CCSGG 2 cut(s) 348, 741
BcoDI GTCTC 2 cut(s) 787, 830
BfmI CTRYAG 1 cut(s) 327
BglI GCCNNNNNGGC 1 cut(s) 473
BisI GCNGC 6 cut(s) 132, 174, 477, 640, 816, 900
BlpI GCTNAGC 1 cut(s) 943
BlsI GCNGC 6 cut(s) 133, 175, 478, 641, 817, 901
Bme1390I CCNGG 3 cut(s) 348, 705, 741
Bme18I GGWCC 2 cut(s) 605, 736
BmeT110I CYCGRG 2 cut(s) 156, 655
BmgT120I GGNCC 2 cut(s) 605, 736
BmiI GGNNCC 4 cut(s) 162, 302, 607, 738
BmrFI CCNGG 3 cut(s) 348, 705, 741
BmsI GCATC 4 cut(s) 58, 180, 382, 802
BpmI CTGGAG 1 cut(s) 137
Bpu10I CCTNAGC 2 cut(s) 287, 463
Bpu1102I GCTNAGC 1 cut(s) 943
BpuEI CTTGAG 3 cut(s) 82, 313, 762
BpuMI CCSGG 2 cut(s) 348, 741
Bsa29I ATCGAT 1 cut(s) 619
BsaAI YACGTR 2 cut(s) 389, 850
BsaJI CCNNGG 2 cut(s) 640, 739
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 661
Bse1I ACTGG 2 cut(s) 640, 943
Bse3DI GCAATG 3 cut(s) 531, 675, 971
BseBI CCWGG 1 cut(s) 705
BseCI ATCGAT 1 cut(s) 619
BseDI CCNNGG 2 cut(s) 640, 739
BseGI GGATG 2 cut(s) 195, 224
BseLI CCNNNNNNNGG 2 cut(s) 115, 661
BseMI GCAATG 3 cut(s) 531, 675, 971
BseMII CTCAG 6 cut(s) 39, 278, 483, 527, 825, 957
BseNI ACTGG 2 cut(s) 640, 943
BseRI GAGGAG 1 cut(s) 483
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 4 cut(s) 143, 160, 802, 886
BsgI GTGCAG 1 cut(s) 384
Bsh1236I CGCG 1 cut(s) 642
BshFI GGCC 3 cut(s) 122, 476, 639
BshNI GGYRCC 1 cut(s) 160
BshVI ATCGAT 1 cut(s) 619
BsiHKCI CYCGRG 2 cut(s) 156, 655
BsiSI CCGG 2 cut(s) 348, 741
BsiWI CGTACG 1 cut(s) 846
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 2 cut(s) 115, 661
BsmAI GTCTC 2 cut(s) 787, 830
BsmBI CGTCTC 1 cut(s) 830
BsmFI GGGAC 1 cut(s) 330
BsnI GGCC 3 cut(s) 122, 476, 639
BsoBI CYCGRG 2 cut(s) 156, 655
Bsp1286I GDGCHC 1 cut(s) 163
Bsp1407I TGTACA 1 cut(s) 624
Bsp143I GATC 2 cut(s) 690, 875
Bsp1720I GCTNAGC 1 cut(s) 943
BspACI CCGC 6 cut(s) 279, 477, 534, 563, 640, 642
BspANI GGCC 3 cut(s) 122, 476, 639
BspCNI CTCAG 6 cut(s) 38, 279, 482, 526, 826, 956
BspDI ATCGAT 1 cut(s) 619
BspFNI CGCG 1 cut(s) 642
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 4 cut(s) 162, 302, 607, 738
BspMAI CTGCAG 1 cut(s) 331
BspPI GGATC 1 cut(s) 883
BspQI GCTCTTC 1 cut(s) 825
BspT107I GGYRCC 1 cut(s) 160
BsrDI GCAATG 3 cut(s) 531, 675, 971
BsrGI TGTACA 1 cut(s) 624
BsrI ACTGG 2 cut(s) 640, 943
BssECI CCNNGG 2 cut(s) 640, 739
BssMI GATC 2 cut(s) 690, 875
Bst2UI CCWGG 1 cut(s) 705
Bst4CI ACNGT 2 cut(s) 602, 684
Bst6I CTCTTC 2 cut(s) 787, 825
BstAPI GCANNNNNTGC 1 cut(s) 392
BstAUI TGTACA 1 cut(s) 624
BstBAI YACGTR 2 cut(s) 389, 850
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 7 cut(s) 25, 287, 463, 469, 513, 834, 943
BstDSI CCRYGG 1 cut(s) 640
BstF5I GGATG 2 cut(s) 195, 224
BstFNI CGCG 1 cut(s) 642
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 2 cut(s) 693, 878
BstMAI GTCTC 2 cut(s) 787, 830
BstMBI GATC 2 cut(s) 690, 875
BstMWI GCNNNNNNNGC 6 cut(s) 128, 269, 278, 383, 392, 473
BstNI CCWGG 1 cut(s) 705
BstNSI RCATGY 1 cut(s) 108
BstSCI CCNGG 3 cut(s) 346, 703, 739
BstSFI CTRYAG 1 cut(s) 327
BstSLI GKGCMC 1 cut(s) 163
BstUI CGCG 1 cut(s) 642
BstV1I GCAGC 4 cut(s) 143, 160, 802, 886
BstX2I RGATCY 1 cut(s) 875
BstXI CCANNNNNNTGG 1 cut(s) 727
BstYI RGATCY 1 cut(s) 875
Bsu15I ATCGAT 1 cut(s) 619
BsuRI GGCC 3 cut(s) 122, 476, 639
BsuTUI ATCGAT 1 cut(s) 619
BtgI CCRYGG 1 cut(s) 640
BtgZI GCGATG 1 cut(s) 81
BtsCI GGATG 2 cut(s) 195, 224
BtsIMutI CAGTG 4 cut(s) 598, 633, 831, 936
Cac8I GCNNGC 1 cut(s) 253
CciI TCATGA 1 cut(s) 199
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 605, 736
Cfr42I CCGCGG 1 cut(s) 643
ClaI ATCGAT 1 cut(s) 619
CseI GACGC 1 cut(s) 323
Csp6I GTAC 3 cut(s) 148, 625, 847
CviAII CATG 5 cut(s) 105, 200, 305, 413, 872
CviQI GTAC 3 cut(s) 148, 625, 847
DdeI CTNAG 7 cut(s) 25, 287, 463, 469, 513, 834, 943
DpnI GATC 2 cut(s) 692, 877
DpnII GATC 2 cut(s) 690, 875
EaeI YGGCCR 1 cut(s) 637
Eam1104I CTCTTC 2 cut(s) 787, 825
EarI CTCTTC 2 cut(s) 787, 825
Eco32I GATATC 2 cut(s) 370, 712
Eco47I GGWCC 2 cut(s) 605, 736
Eco72I CACGTG 1 cut(s) 389
Eco88I CYCGRG 2 cut(s) 156, 655
EcoRII CCWGG 1 cut(s) 703
EcoRV GATATC 2 cut(s) 370, 712
EcoT22I ATGCAT 1 cut(s) 195
Esp3I CGTCTC 1 cut(s) 830
FaeI CATG 5 cut(s) 108, 203, 308, 416, 875
FaiI YATR 8 cut(s) 99, 106, 152, 201, 306, 414, 582, 873
FaqI GGGAC 1 cut(s) 330
FatI CATG 5 cut(s) 104, 199, 304, 412, 871
Fnu4HI GCNGC 6 cut(s) 132, 174, 477, 640, 816, 900
FokI GGATG 2 cut(s) 202, 231
Fsp4HI GCNGC 6 cut(s) 132, 174, 477, 640, 816, 900
FspI TGCGCA 1 cut(s) 72
GlaI GCGC 1 cut(s) 72
GluI GCNGC 6 cut(s) 132, 174, 477, 640, 816, 900
GsuI CTGGAG 1 cut(s) 137
HaeIII GGCC 3 cut(s) 122, 476, 639
HapII CCGG 2 cut(s) 348, 741
HgaI GACGC 1 cut(s) 323
HhaI GCGC 1 cut(s) 73
Hin1II CATG 5 cut(s) 108, 203, 308, 416, 875
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HindIII AAGCTT 2 cut(s) 17, 745
HinfI GANTC 1 cut(s) 930
HpaII CCGG 2 cut(s) 348, 741
HphI GGTGA 3 cut(s) 656, 922, 962
Hpy166II GTNNAC 2 cut(s) 51, 605
Hpy188I TCNGA 2 cut(s) 472, 811
Hpy188III TCNNGA 5 cut(s) 116, 200, 573, 751, 824
Hpy8I GTNNAC 2 cut(s) 51, 605
HpyCH4III ACNGT 2 cut(s) 602, 684
HpyCH4IV ACGT 5 cut(s) 388, 442, 755, 849, 856
HpyCH4V TGCA 8 cut(s) 131, 193, 329, 365, 395, 419, 680, 699
HpyF10VI GCNNNNNNNGC 6 cut(s) 128, 269, 278, 383, 392, 473
HpyF3I CTNAG 7 cut(s) 25, 287, 463, 469, 513, 834, 943
HpySE526I ACGT 5 cut(s) 388, 442, 755, 849, 856
Hsp92II CATG 5 cut(s) 108, 203, 308, 416, 875
HspAI GCGC 1 cut(s) 71
KspI CCGCGG 1 cut(s) 643
Kzo9I GATC 2 cut(s) 690, 875
LguI GCTCTTC 1 cut(s) 825
LmnI GCTCC 1 cut(s) 181
Lsp1109I GCAGC 4 cut(s) 143, 160, 802, 886
LweI GCATC 4 cut(s) 58, 180, 382, 802
MaeII ACGT 5 cut(s) 388, 442, 755, 849, 856
MaeIII GTNAC 2 cut(s) 610, 852
MalI GATC 2 cut(s) 692, 877
MboI GATC 2 cut(s) 690, 875
MboII GAAGA 6 cut(s) 398, 700, 776, 804, 812, 925
MfeI CAATTG 1 cut(s) 585
MflI RGATCY 1 cut(s) 875
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 7 cut(s) 237, 241, 585, 670, 924, 954, 979
MlyI GAGTC 1 cut(s) 939
MmeI TCCRAC 1 cut(s) 458
Mph1103I ATGCAT 1 cut(s) 195
MseI TTAA 5 cut(s) 57, 240, 545, 552, 978
MslI CAYNNNNRTG 2 cut(s) 198, 414
MspA1I CMGCKG 2 cut(s) 642, 947
MspI CCGG 2 cut(s) 348, 741
MspR9I CCNGG 3 cut(s) 348, 705, 741
MunI CAATTG 1 cut(s) 585
MvaI CCWGG 1 cut(s) 705
MvnI CGCG 1 cut(s) 642
MwoI GCNNNNNNNGC 6 cut(s) 128, 269, 278, 383, 392, 473
NciI CCSGG 2 cut(s) 348, 741
NdeII GATC 2 cut(s) 690, 875
NlaIII CATG 5 cut(s) 108, 203, 308, 416, 875
NlaIV GGNNCC 4 cut(s) 162, 302, 607, 738
NmuCI GTSAC 1 cut(s) 610
NsbI TGCGCA 1 cut(s) 72
NsiI ATGCAT 1 cut(s) 195
NspI RCATGY 1 cut(s) 108
PagI TCATGA 1 cut(s) 199
PciSI GCTCTTC 1 cut(s) 825
Pfl23II CGTACG 1 cut(s) 846
PkrI GCNGC 6 cut(s) 133, 175, 478, 641, 817, 901
PleI GAGTC 1 cut(s) 938
PmaCI CACGTG 1 cut(s) 389
PmlI CACGTG 1 cut(s) 389
PpsI GAGTC 1 cut(s) 938
Ppu21I YACGTR 2 cut(s) 389, 850
PshBI ATTAAT 2 cut(s) 240, 978
Psp6I CCWGG 1 cut(s) 703
PspCI CACGTG 1 cut(s) 389
PspGI CCWGG 1 cut(s) 703
PspLI CGTACG 1 cut(s) 846
PspN4I GGNNCC 4 cut(s) 162, 302, 607, 738
PspPI GGNCC 2 cut(s) 605, 736
PstI CTGCAG 1 cut(s) 331
PsuI RGATCY 1 cut(s) 875
PvuII CAGCTG 1 cut(s) 947
RsaI GTAC 3 cut(s) 149, 626, 848
RsaNI GTAC 3 cut(s) 148, 625, 847
RseI CAYNNNNRTG 2 cut(s) 198, 414
SacII CCGCGG 1 cut(s) 643
SapI GCTCTTC 1 cut(s) 825
SaqAI TTAA 5 cut(s) 57, 240, 545, 552, 978
SatI GCNGC 6 cut(s) 132, 174, 477, 640, 816, 900
Sau3AI GATC 2 cut(s) 690, 875
Sau96I GGNCC 2 cut(s) 605, 736
SchI GAGTC 1 cut(s) 939
ScrFI CCNGG 3 cut(s) 348, 705, 741
SduI GDGCHC 1 cut(s) 163
SfaNI GCATC 4 cut(s) 58, 180, 382, 802
SfcI CTRYAG 1 cut(s) 327
Sfr303I CCGCGG 1 cut(s) 643
SgrBI CCGCGG 1 cut(s) 643
SinI GGWCC 2 cut(s) 605, 736
SmiMI CAYNNNNRTG 2 cut(s) 198, 414
SmlI CTYRAG 3 cut(s) 61, 292, 777
SmoI CTYRAG 3 cut(s) 61, 292, 777
Sse9I AATT 7 cut(s) 237, 241, 585, 670, 924, 954, 979
SsiI CCGC 6 cut(s) 279, 477, 534, 563, 640, 642
StyD4I CCNGG 3 cut(s) 346, 703, 739
TaaI ACNGT 2 cut(s) 602, 684
TaiI ACGT 5 cut(s) 391, 445, 758, 852, 859
TaqI TCGA 2 cut(s) 619, 825
TasI AATT 7 cut(s) 237, 241, 585, 670, 924, 954, 979
TatI WGTACW 2 cut(s) 147, 624
TauI GCSGC 2 cut(s) 479, 642
Tru1I TTAA 5 cut(s) 57, 240, 545, 552, 978
Tru9I TTAA 5 cut(s) 57, 240, 545, 552, 978
TscAI CASTG 4 cut(s) 605, 640, 838, 943
TseFI GTSAC 1 cut(s) 610
TseI GCWGC 4 cut(s) 131, 173, 815, 899
Tsp45I GTSAC 1 cut(s) 610
TspDTI ATGAA 3 cut(s) 188, 398, 777
TspRI CASTG 4 cut(s) 605, 640, 838, 943
VpaK11BI GGWCC 2 cut(s) 605, 736
VspI ATTAAT 2 cut(s) 240, 978
XceI RCATGY 1 cut(s) 108
XcmI CCANNNNNNNNNTGG 1 cut(s) 730
Zsp2I ATGCAT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.