Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0007613

Physical Location & Seq

Genomic Coordinates Reverse (-)

7860552 .. 7860962

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1093700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGCATTTTCATGATTGTTTTGTTAGTGGATGTGATGGTTCTGTGCTATTGAATTCCACATCAAACAGTCATGCTGAGAAAGAAACAATCCCCAACCAGAGCTTAAGAGGGTTCCATGTCATAGATGCAGTAAAATCTGCAGTAGAAGAGAAGTGTCCTGGTGTTGTTTCTTGTGCTGATATCTTGGCCTTGGTAGCTCGTGATACAGTTAGAATTATTAACCATAGTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006725 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009698 GO:0009808 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0019748 GO:0030054 GO:0030312 GO:0042221 GO:0044237 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1901360 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

78

Amino Acids

8.32

Weight (kDa)

6.0

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	1 - 72	3.9e-28	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05240 AT1G05250
fragaria_vesca	FvH4_6g43490
malus_domestica	MD09G1106000.v1.1 MD17G1093700.v1.1
prunus_persica	Prupe.3G219600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0159961 RchiOBHm_Chr2g0159971
rosa_laevigata	RLG00000021188 RLG00000021190
rosa_multiflora	Rmu_sc0006940.1_g000002
rosa_roxburghii	Rroxscaffold_2G00090110 Rroxscaffold_2G00090120
rosa_rugosa	Rorug02G0479500 Rorug02G0479600
rosa_samantha	Rh2AG546100 Rh2AG546200 Rh2BG559400 Rh2BG559500 Rh2CG529500 Rh2CG529600 Rh2DG568100 Rh2DG568200
rosa_wichuraiana	Rw2G045170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	52
AflII	CTTAAG	1 cut(s)	103
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	2 cut(s)	102, 197
AluI	AGCT	2 cut(s)	102, 197
AoxI	GGCC	1 cut(s)	186
ApoI	RAATTY	1 cut(s)	52
BauI	CACGAG	1 cut(s)	198
BccI	CCATC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	138
BfrI	CTTAAG	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	1 cut(s)	159
BmsI	GCATC	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	35
BseMII	CTCAG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	188
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	67
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	113
BspMAI	CTGCAG	1 cut(s)	142
BspTI	CTTAAG	1 cut(s)	103
BssECI	CCNNGG	1 cut(s)	189
BssSI	CACGAG	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	189
Bst2BI	CACGAG	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	68, 208
Bst6I	CTCTTC	1 cut(s)	141
BstAFI	CTTAAG	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	35
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	35
CciI	TCATGA	1 cut(s)	10
CviAII	CATG	3 cut(s)	11, 71, 116
CviJI	RGCY	3 cut(s)	102, 188, 197
CviKI_1	RGCY	3 cut(s)	102, 188, 197
DdeI	CTNAG	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	189
Eco32I	GATATC	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	157
EcoRV	GATATC	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	189
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	3 cut(s)	14, 74, 119
FaiI	YATR	5 cut(s)	12, 72, 117, 122, 225
FatI	CATG	3 cut(s)	10, 70, 115
FokI	GGATG	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	188
Hin1II	CATG	3 cut(s)	14, 74, 119
Hpy188III	TCNNGA	2 cut(s)	11, 200
HpyCH4III	ACNGT	2 cut(s)	68, 208
HpyCH4V	TGCA	3 cut(s)	4, 128, 140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	3 cut(s)	14, 74, 119
LpnPI	CCDG	3 cut(s)	110, 144, 171
LweI	GCATC	1 cut(s)	115
MboII	GAAGA	1 cut(s)	158
MluCI	AATT	2 cut(s)	52, 213
MnlI	CCTC	1 cut(s)	101
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	104, 219
MslI	CAYNNNNRTG	1 cut(s)	9
MspCI	CTTAAG	1 cut(s)	103
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	194
NlaIII	CATG	3 cut(s)	14, 74, 119
NlaIV	GGNNCC	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	142
RseI	CAYNNNNRTG	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	104, 219
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	2 cut(s)	104, 199
SfaNI	GCATC	1 cut(s)	115
SfcI	CTRYAG	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
Sse9I	AATT	2 cut(s)	52, 213
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	68, 208
TasI	AATT	2 cut(s)	52, 213
Tru1I	TTAA	2 cut(s)	104, 219
Tru9I	TTAA	2 cut(s)	104, 219
Vha464I	CTTAAG	1 cut(s)	103
XapI	RAATTY	1 cut(s)	52
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.