FvH4_6g43490

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007613
Physical Location & Seq
Forward (+)
33639026 .. 33640782
1757 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43490.t1

Sequence Viewer

Length: 984 bp
ATGGCTCATACTCAAAAGCTTGTCTGGTTTATTTCACTTCAACTCCTGCTTGTTCTGTTTGCCTTAGACTCCACTACTAATGCACTGCAAGTTGGGTTCTACAAGTATACATGCCCACATTTAGAGGATATTGTCCATTACACTACCTATTACTACGTATCTCGGACACCAACTCTTGCTGCTCCTCTGTTAAGAATGCATTTCCATGATTGTTTTGTTAGGGGTTGTGATGGCTCTGTGCTATTGAAATCAACAGCAAAAAATCAAGCCGAGCGAGACGCAATCCCAAACCAAAGCTTAAGAGGGTTCCAAGTCATAGATGCTGTAAAATATGCAGTAGAAAAGGCGTGCCCTGGTGTTGTTTCTTGTGCTGATATCTTGGCCCTAGTAGCCCGCGACGCAGTCTTAATGCTTCATGGTCCATATTGGGAAGTTCCTACCGGACGAAGAGATGGAAGAGTGTCAATAGCCTCGGAAGCCTTGACAGGCTTACCACCTCCCTTTGCTAACATAGCTCAGCTCAAAGGAATGTTTGCTTCAAAGGGTCTAACTGTTAAAGACCTAGTGGTCCTATCAGGAGGACACACCATTGGGACATCTCACTGCTCATCATTCTCCAATCGTCTATACAATTTCACCGGTAAAGGAGACACAGACCCCACACTGGACCGGAATTACATCGCTCAGTTGAAGATCAAATGTAAGCCGGGGGATGCAAACACACTTGTTGAAATGGACCCTGGAAGCTTCAAAACATTTGATGAAGATTACTACACTCTTGTTGCCAAAAGAAGAGGACTTTTCCAATCTGATGCAGCTCTTCTAGATGATATCGAGACGAAAACCTACGTGACAACCCAAGCCATCACTCATGGAGCCACCTTTGCAAAAGATTTTGCAGCATCAATGGTGAAAATGGGTAACATTGGTGTCCTCACAGGCAAAAATGGTGAAATAAGGAAGCAATGTGCTTTTGTCAACTGA

Protein Analysis

328

Amino Acids

35.88

Weight (kDa)

8.52

Isoelectric Point (pI)

31.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 53 - 287 2.4e-85 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 566
AccI GTMKAC 1 cut(s) 107
AccII CGCG 1 cut(s) 396
AciI CCGC 1 cut(s) 394
AfiI CCNNNNNNNGG 1 cut(s) 664
AflII CTTAAG 1 cut(s) 298
AgeI ACCGGT 1 cut(s) 638
AgsI TTSAA 6 cut(s) 41, 247, 540, 691, 731, 751
AjnI CCWGG 2 cut(s) 352, 739
AluBI AGCT 6 cut(s) 19, 297, 515, 520, 747, 818
AluI AGCT 6 cut(s) 19, 297, 515, 520, 747, 818
Alw26I GTCTC 3 cut(s) 270, 642, 830
AoxI GGCC 1 cut(s) 381
ApeKI GCWGC 3 cut(s) 179, 815, 899
AsiGI ACCGGT 1 cut(s) 638
AspS9I GGNCC 5 cut(s) 382, 419, 568, 667, 736
AsuC2I CCSGG 1 cut(s) 708
AsuHPI GGTGA 3 cut(s) 628, 922, 962
AvaII GGWCC 4 cut(s) 419, 568, 667, 736
BaeGI GKGCMC 1 cut(s) 353
BbvI GCAGC 3 cut(s) 166, 827, 911
BccI CCATC 3 cut(s) 224, 446, 872
BciT130I CCWGG 2 cut(s) 354, 741
BcnI CCSGG 1 cut(s) 708
BcoDI GTCTC 3 cut(s) 270, 642, 830
BfaI CTAG 3 cut(s) 386, 563, 824
BfrI CTTAAG 1 cut(s) 298
BisI GCNGC 3 cut(s) 180, 816, 900
BlpI GCTNAGC 1 cut(s) 516
BlsI GCNGC 3 cut(s) 181, 817, 901
Bme1390I CCNGG 3 cut(s) 354, 708, 741
Bme18I GGWCC 4 cut(s) 419, 568, 667, 736
BmgT120I GGNCC 5 cut(s) 382, 419, 568, 667, 736
BmiI GGNNCC 3 cut(s) 308, 738, 877
BmrFI CCNGG 3 cut(s) 354, 708, 741
BmsI GCATC 4 cut(s) 310, 703, 802, 911
Bpu1102I GCTNAGC 1 cut(s) 516
BpuMI CCSGG 1 cut(s) 708
BsaAI YACGTR 2 cut(s) 157, 850
BsaJI CCNNGG 4 cut(s) 352, 471, 707, 739
BsaWI WCCGGW 3 cut(s) 440, 638, 669
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 1 cut(s) 664
Bse118I RCCGGY 1 cut(s) 638
Bse1I ACTGG 1 cut(s) 669
Bse3DI GCAATG 1 cut(s) 971
BseBI CCWGG 2 cut(s) 354, 741
BseDI CCNNGG 4 cut(s) 352, 471, 707, 739
BseGI GGATG 1 cut(s) 718
BseLI CCNNNNNNNGG 1 cut(s) 664
BseMI GCAATG 1 cut(s) 971
BseMII CTCAG 2 cut(s) 530, 698
BseNI ACTGG 1 cut(s) 669
BseRI GAGGAG 1 cut(s) 174
BseSI GKGCMC 1 cut(s) 353
BseXI GCAGC 3 cut(s) 166, 827, 911
Bsh1236I CGCG 1 cut(s) 396
BshFI GGCC 1 cut(s) 383
BshTI ACCGGT 1 cut(s) 638
BsiSI CCGG 4 cut(s) 441, 639, 670, 707
BslFI GGGAC 1 cut(s) 607
BslI CCNNNNNNNGG 1 cut(s) 664
BsmAI GTCTC 3 cut(s) 270, 642, 830
BsmBI CGTCTC 2 cut(s) 270, 830
BsmFI GGGAC 1 cut(s) 607
BsmI GAATGC 1 cut(s) 201
BsnI GGCC 1 cut(s) 383
Bsp1286I GDGCHC 1 cut(s) 353
Bsp143I GATC 1 cut(s) 693
Bsp1720I GCTNAGC 1 cut(s) 516
BspACI CCGC 1 cut(s) 394
BspANI GGCC 1 cut(s) 383
BspCNI CTCAG 2 cut(s) 529, 697
BspFNI CGCG 1 cut(s) 396
BspLI GGNNCC 3 cut(s) 308, 738, 877
BspQI GCTCTTC 1 cut(s) 825
BspTI CTTAAG 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 971
BsrFI RCCGGY 1 cut(s) 638
BsrI ACTGG 1 cut(s) 669
BssAI RCCGGY 1 cut(s) 638
BssECI CCNNGG 4 cut(s) 352, 471, 707, 739
BssMI GATC 1 cut(s) 693
BssNAI GTATAC 1 cut(s) 108
Bst1107I GTATAC 1 cut(s) 108
Bst2UI CCWGG 2 cut(s) 354, 741
Bst4CI ACNGT 1 cut(s) 553
Bst6I CTCTTC 4 cut(s) 442, 451, 787, 825
BstAFI CTTAAG 1 cut(s) 298
BstBAI YACGTR 2 cut(s) 157, 850
BstC8I GCNNGC 2 cut(s) 349, 394
BstDEI CTNAG 3 cut(s) 64, 516, 684
BstF5I GGATG 1 cut(s) 718
BstFNI CGCG 1 cut(s) 396
BstKTI GATC 1 cut(s) 696
BstMAI GTCTC 3 cut(s) 270, 642, 830
BstMBI GATC 1 cut(s) 693
BstMWI GCNNNNNNNGC 5 cut(s) 389, 398, 476, 512, 884
BstNI CCWGG 2 cut(s) 354, 741
BstNSI RCATGY 1 cut(s) 114
BstSCI CCNGG 3 cut(s) 352, 706, 739
BstSLI GKGCMC 1 cut(s) 353
BstSNI TACGTA 1 cut(s) 157
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 3 cut(s) 166, 827, 911
BstZ17I GTATAC 1 cut(s) 108
BsuRI GGCC 1 cut(s) 383
BtgZI GCGATG 1 cut(s) 664
BtsCI GGATG 1 cut(s) 718
BtsI GCAGTG 2 cut(s) 83, 601
BtsIMutI CAGTG 3 cut(s) 83, 601, 662
Cac8I GCNNGC 2 cut(s) 349, 394
Cfr10I RCCGGY 1 cut(s) 638
Cfr13I GGNCC 5 cut(s) 382, 419, 568, 667, 736
CseI GACGC 2 cut(s) 287, 407
CspAI ACCGGT 1 cut(s) 638
CviAII CATG 4 cut(s) 111, 206, 416, 872
DdeI CTNAG 3 cut(s) 64, 516, 684
DpnI GATC 1 cut(s) 695
DpnII GATC 1 cut(s) 693
DrdI GACNNNNNNGTC 1 cut(s) 566
DseDI GACNNNNNNGTC 1 cut(s) 566
Eam1104I CTCTTC 4 cut(s) 442, 451, 787, 825
EarI CTCTTC 4 cut(s) 442, 451, 787, 825
Eco105I TACGTA 1 cut(s) 157
Eco32I GATATC 2 cut(s) 376, 832
Eco47I GGWCC 4 cut(s) 419, 568, 667, 736
EcoRII CCWGG 2 cut(s) 352, 739
EcoRV GATATC 2 cut(s) 376, 832
EcoT22I ATGCAT 1 cut(s) 201
Esp3I CGTCTC 2 cut(s) 270, 830
FaeI CATG 4 cut(s) 114, 209, 419, 875
FaqI GGGAC 1 cut(s) 607
FatI CATG 4 cut(s) 110, 205, 415, 871
FauI CCCGC 1 cut(s) 401
FblI GTMKAC 1 cut(s) 107
Fnu4HI GCNGC 3 cut(s) 180, 816, 900
FokI GGATG 1 cut(s) 725
Fsp4HI GCNGC 3 cut(s) 180, 816, 900
FspBI CTAG 3 cut(s) 386, 563, 824
GluI GCNGC 3 cut(s) 180, 816, 900
HaeIII GGCC 1 cut(s) 383
HapII CCGG 4 cut(s) 441, 639, 670, 707
HgaI GACGC 2 cut(s) 287, 407
Hin1II CATG 4 cut(s) 114, 209, 419, 875
HincII GTYRAC 1 cut(s) 979
HindII GTYRAC 1 cut(s) 979
HindIII AAGCTT 3 cut(s) 17, 295, 745
HinfI GANTC 1 cut(s) 68
HpaII CCGG 4 cut(s) 441, 639, 670, 707
HphI GGTGA 3 cut(s) 628, 922, 962
Hpy166II GTNNAC 2 cut(s) 108, 979
Hpy188I TCNGA 3 cut(s) 165, 475, 811
Hpy188III TCNNGA 3 cut(s) 576, 824, 835
Hpy8I GTNNAC 2 cut(s) 108, 979
Hpy99I CGWCG 1 cut(s) 401
HpyCH4III ACNGT 1 cut(s) 553
HpyCH4IV ACGT 2 cut(s) 156, 849
HpyCH4V TGCA 8 cut(s) 83, 88, 199, 335, 716, 815, 887, 899
HpyF10VI GCNNNNNNNGC 5 cut(s) 389, 398, 476, 512, 884
HpyF3I CTNAG 3 cut(s) 64, 516, 684
HpySE526I ACGT 2 cut(s) 156, 849
Hsp92II CATG 4 cut(s) 114, 209, 419, 875
Kzo9I GATC 1 cut(s) 693
LguI GCTCTTC 1 cut(s) 825
LmnI GCTCC 2 cut(s) 187, 875
Lsp1109I GCAGC 3 cut(s) 166, 827, 911
LweI GCATC 4 cut(s) 310, 703, 802, 911
MaeI CTAG 3 cut(s) 386, 563, 824
MaeII ACGT 2 cut(s) 156, 849
MaeIII GTNAC 2 cut(s) 850, 920
MalI GATC 1 cut(s) 695
MboI GATC 1 cut(s) 693
MboII GAAGA 6 cut(s) 459, 468, 703, 776, 804, 812
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 2 cut(s) 631, 673
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 8 cut(s) 118, 195, 296, 481, 507, 572, 788, 944
Mph1103I ATGCAT 1 cut(s) 201
MseI TTAA 4 cut(s) 191, 299, 407, 555
MslI CAYNNNNRTG 1 cut(s) 204
MspCI CTTAAG 1 cut(s) 298
MspI CCGG 4 cut(s) 441, 639, 670, 707
MspR9I CCNGG 3 cut(s) 354, 708, 741
Mva1269I GAATGC 1 cut(s) 201
MvaI CCWGG 2 cut(s) 354, 741
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 5 cut(s) 389, 398, 476, 512, 884
NciI CCSGG 1 cut(s) 708
NdeII GATC 1 cut(s) 693
NlaIII CATG 4 cut(s) 114, 209, 419, 875
NlaIV GGNNCC 3 cut(s) 308, 738, 877
NmeAIII GCCGAG 1 cut(s) 295
NmuCI GTSAC 1 cut(s) 850
NsiI ATGCAT 1 cut(s) 201
NspI RCATGY 1 cut(s) 114
PciSI GCTCTTC 1 cut(s) 825
PctI GAATGC 1 cut(s) 201
PflFI GACNNNGTC 1 cut(s) 401
PinAI ACCGGT 1 cut(s) 638
PkrI GCNGC 3 cut(s) 181, 817, 901
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
Ppu21I YACGTR 2 cut(s) 157, 850
Psp6I CCWGG 2 cut(s) 352, 739
PspGI CCWGG 2 cut(s) 352, 739
PspN4I GGNNCC 3 cut(s) 308, 738, 877
PspPI GGNCC 5 cut(s) 382, 419, 568, 667, 736
PsyI GACNNNGTC 1 cut(s) 401
RseI CAYNNNNRTG 1 cut(s) 204
SapI GCTCTTC 1 cut(s) 825
SaqAI TTAA 4 cut(s) 191, 299, 407, 555
SatI GCNGC 3 cut(s) 180, 816, 900
Sau3AI GATC 1 cut(s) 693
Sau96I GGNCC 5 cut(s) 382, 419, 568, 667, 736
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 3 cut(s) 354, 708, 741
SduI GDGCHC 1 cut(s) 353
SfaNI GCATC 4 cut(s) 310, 703, 802, 911
SinI GGWCC 4 cut(s) 419, 568, 667, 736
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
SnaBI TACGTA 1 cut(s) 157
Sse9I AATT 2 cut(s) 631, 673
SsiI CCGC 1 cut(s) 394
SspMI CTAG 3 cut(s) 386, 563, 824
StyD4I CCNGG 3 cut(s) 352, 706, 739
TaaI ACNGT 1 cut(s) 553
TaiI ACGT 2 cut(s) 159, 852
TaqI TCGA 1 cut(s) 834
TasI AATT 2 cut(s) 631, 673
Tru1I TTAA 4 cut(s) 191, 299, 407, 555
Tru9I TTAA 4 cut(s) 191, 299, 407, 555
TscAI CASTG 3 cut(s) 90, 608, 669
TseFI GTSAC 1 cut(s) 850
TseI GCWGC 3 cut(s) 179, 815, 899
Tsp45I GTSAC 1 cut(s) 850
TspDTI ATGAA 2 cut(s) 404, 777
TspRI CASTG 3 cut(s) 90, 608, 669
Tth111I GACNNNGTC 1 cut(s) 401
Vha464I CTTAAG 1 cut(s) 298
VpaK11BI GGWCC 4 cut(s) 419, 568, 667, 736
XbaI TCTAGA 1 cut(s) 823
XceI RCATGY 1 cut(s) 114
XmiI GTMKAC 1 cut(s) 107
XspI CTAG 3 cut(s) 386, 563, 824
Zsp2I ATGCAT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.