Rh2BG559400

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0007613
Physical Location & Seq
Forward (+)
77002323 .. 77003693
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG559400.1

Sequence Viewer

Length: 984 bp
ATGGCTCATATCCAAAAGCTTGTCTCAGTTTTTTCACTTCAACTCCTGCTTGTTCTGTTTGCCTTGGACTCCACTACCTATGCACTGCAAGTTGGGTTCTACCGGAAAACCTGTCCAAATTTAGAGGCTATTGTCCATGCGACTACTTATAACTACATATCTCGGGCACCAACTCTTGCTGCTCCTTTGTTAAGAATGCATTTCCATGATTGTTTTGTTAGGGGTTGTGATGGTTCTGTGCTATTGAAATCAACAGCAAACAAACAAGCTGAGAGAGATGCAATCCCCAACCTAAGCTTAAGAGGGTTCCAAGTCATAGATGCTGTAAAATCTGCAGTAGAAAAGAAGTGCCCTGGTGTTGTTTCTTGTGCTGATATCTTGGCCCTAGTAGCTCGCGACGCAGTATTAATGCTTCATGGTCCATTTTGGGAAGTTCCTACAGGACGAAGAGATGGAAGAGTGTCTATAGCCTCGGAGGCCTTGACAAACTTACCACCTCCTTTTGCTAACATAGCTCAGCTCAAAGGAATGTTTGCTTCAAAGGGTCTATCTGTTAAAGACCTAGTGGTCCTATCAGGAGGACACACCATTGGGACATCTCACTGCTCATCATTCTCGAATCGTATATACAATTTCACCGGTAAAGGTGACACAGACCCCAAATTGGACCAGAATTACGTAGCTCAGTTGAAGATCAAATGTAAGCCGGGGGATGCCAACACACTTGTTGAGATGGACCCTGGAAGCTTCAAAACATTTGATGAAGATTACTACACTCTAGTGACCAAAAGAAGAGGACTTTTCCAATCTGATTCAGCTCTTCTTGATGATATGGAGACGAAAGCCTATGTGACAACCCAAGCCATCACTCATGGATTGACCTTTGCAAAAGATTTTGCTGCATCGATGGTGAAAATGGGTAACATTGGAGTCCTCACTGGAAAAAATGGTGAAATAAGGAAGCAATGTGCTTTTATTAATTGA

Protein Analysis

327

Amino Acids

35.66

Weight (kDa)

8.92

Isoelectric Point (pI)

30.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 48 - 287 1.8e-86 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
AasI GACNNNNNNGTC 1 cut(s) 566
AccB1I GGYRCC 1 cut(s) 166
AccII CGCG 1 cut(s) 396
AcsI RAATTY 1 cut(s) 118
AfiI CCNNNNNNNGG 1 cut(s) 664
AflII CTTAAG 1 cut(s) 298
AgeI ACCGGT 1 cut(s) 638
AgsI TTSAA 5 cut(s) 41, 247, 540, 691, 751
AjnI CCWGG 2 cut(s) 352, 739
AleI CACNNNNGTG 1 cut(s) 779
AluBI AGCT 9 cut(s) 19, 269, 297, 392, 515, 520, 683, 747, 818
AluI AGCT 9 cut(s) 19, 269, 297, 392, 515, 520, 683, 747, 818
Alw26I GTCTC 2 cut(s) 28, 830
Ama87I CYCGRG 1 cut(s) 162
AoxI GGCC 2 cut(s) 381, 477
ApeKI GCWGC 2 cut(s) 179, 899
ApoI RAATTY 1 cut(s) 118
AseI ATTAAT 2 cut(s) 407, 978
AsiGI ACCGGT 1 cut(s) 638
AspS9I GGNCC 5 cut(s) 382, 419, 568, 667, 736
AsuC2I CCSGG 1 cut(s) 708
AsuHPI GGTGA 4 cut(s) 628, 659, 922, 962
AvaI CYCGRG 1 cut(s) 162
AvaII GGWCC 4 cut(s) 419, 568, 667, 736
BaeGI GKGCMC 2 cut(s) 169, 353
BanI GGYRCC 1 cut(s) 166
BarI GAAGNNNNNNTAC 2 cut(s) 396, 428
BbvI GCAGC 2 cut(s) 166, 886
BccI CCATC 5 cut(s) 224, 446, 727, 872, 901
BciT130I CCWGG 2 cut(s) 354, 741
BcnI CCSGG 1 cut(s) 708
BcoDI GTCTC 2 cut(s) 28, 830
BfaI CTAG 3 cut(s) 386, 563, 779
BfmI CTRYAG 3 cut(s) 333, 438, 465
BfrI CTTAAG 1 cut(s) 298
BglI GCCNNNNNGGC 1 cut(s) 476
BisI GCNGC 2 cut(s) 180, 900
BlpI GCTNAGC 1 cut(s) 516
BlsI GCNGC 2 cut(s) 181, 901
Bme1390I CCNGG 3 cut(s) 354, 708, 741
Bme18I GGWCC 4 cut(s) 419, 568, 667, 736
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 5 cut(s) 382, 419, 568, 667, 736
BmiI GGNNCC 3 cut(s) 168, 308, 738
BmrFI CCNGG 3 cut(s) 354, 708, 741
BmsI GCATC 4 cut(s) 268, 310, 703, 911
Bpu10I CCTNAGC 1 cut(s) 293
Bpu1102I GCTNAGC 1 cut(s) 516
BpuMI CCSGG 1 cut(s) 708
Bsa29I ATCGAT 1 cut(s) 905
BsaAI YACGTR 1 cut(s) 679
BsaJI CCNNGG 5 cut(s) 63, 352, 471, 707, 739
BsaWI WCCGGW 2 cut(s) 102, 638
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 1 cut(s) 664
Bse118I RCCGGY 1 cut(s) 638
Bse1I ACTGG 1 cut(s) 943
Bse3DI GCAATG 1 cut(s) 971
BseBI CCWGG 2 cut(s) 354, 741
BseCI ATCGAT 1 cut(s) 905
BseDI CCNNGG 5 cut(s) 63, 352, 471, 707, 739
BseGI GGATG 1 cut(s) 718
BseLI CCNNNNNNNGG 1 cut(s) 664
BseMI GCAATG 1 cut(s) 971
BseMII CTCAG 4 cut(s) 39, 261, 530, 698
BseNI ACTGG 1 cut(s) 943
BseSI GKGCMC 2 cut(s) 169, 353
BseXI GCAGC 2 cut(s) 166, 886
Bsh1236I CGCG 1 cut(s) 396
BshFI GGCC 2 cut(s) 383, 479
BshNI GGYRCC 1 cut(s) 166
BshTI ACCGGT 1 cut(s) 638
BshVI ATCGAT 1 cut(s) 905
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 3 cut(s) 103, 639, 707
BslFI GGGAC 1 cut(s) 607
BslI CCNNNNNNNGG 1 cut(s) 664
BsmAI GTCTC 2 cut(s) 28, 830
BsmBI CGTCTC 1 cut(s) 830
BsmFI GGGAC 1 cut(s) 607
BsmI GAATGC 1 cut(s) 201
BsnI GGCC 2 cut(s) 383, 479
BsoBI CYCGRG 1 cut(s) 162
Bsp1286I GDGCHC 2 cut(s) 169, 353
Bsp143I GATC 1 cut(s) 693
Bsp1720I GCTNAGC 1 cut(s) 516
Bsp68I TCGCGA 1 cut(s) 396
BspANI GGCC 2 cut(s) 383, 479
BspCNI CTCAG 4 cut(s) 38, 262, 529, 697
BspDI ATCGAT 1 cut(s) 905
BspFNI CGCG 1 cut(s) 396
BspLI GGNNCC 3 cut(s) 168, 308, 738
BspMAI CTGCAG 1 cut(s) 337
BspQI GCTCTTC 1 cut(s) 825
BspT107I GGYRCC 1 cut(s) 166
BspTI CTTAAG 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 971
BsrFI RCCGGY 1 cut(s) 638
BsrI ACTGG 1 cut(s) 943
BssAI RCCGGY 1 cut(s) 638
BssECI CCNNGG 5 cut(s) 63, 352, 471, 707, 739
BssMI GATC 1 cut(s) 693
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 2 cut(s) 354, 741
Bst6I CTCTTC 4 cut(s) 442, 451, 787, 825
BstAFI CTTAAG 1 cut(s) 298
BstBAI YACGTR 1 cut(s) 679
BstC8I GCNNGC 1 cut(s) 394
BstDEI CTNAG 5 cut(s) 25, 270, 293, 516, 684
BstF5I GGATG 1 cut(s) 718
BstFNI CGCG 1 cut(s) 396
BstKTI GATC 1 cut(s) 696
BstMAI GTCTC 2 cut(s) 28, 830
BstMBI GATC 1 cut(s) 693
BstMWI GCNNNNNNNGC 4 cut(s) 389, 398, 476, 512
BstNI CCWGG 2 cut(s) 354, 741
BstSCI CCNGG 3 cut(s) 352, 706, 739
BstSFI CTRYAG 3 cut(s) 333, 438, 465
BstSLI GKGCMC 2 cut(s) 169, 353
BstSNI TACGTA 1 cut(s) 679
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 2 cut(s) 166, 886
Bsu15I ATCGAT 1 cut(s) 905
BsuRI GGCC 2 cut(s) 383, 479
BsuTUI ATCGAT 1 cut(s) 905
BtsCI GGATG 1 cut(s) 718
BtsI GCAGTG 2 cut(s) 83, 601
BtsIMutI CAGTG 3 cut(s) 83, 601, 936
BtuMI TCGCGA 1 cut(s) 396
Cac8I GCNNGC 1 cut(s) 394
Cfr10I RCCGGY 1 cut(s) 638
Cfr13I GGNCC 5 cut(s) 382, 419, 568, 667, 736
ClaI ATCGAT 1 cut(s) 905
CseI GACGC 1 cut(s) 407
CspAI ACCGGT 1 cut(s) 638
CviAII CATG 4 cut(s) 137, 206, 416, 872
DdeI CTNAG 5 cut(s) 25, 270, 293, 516, 684
DpnI GATC 1 cut(s) 695
DpnII GATC 1 cut(s) 693
DrdI GACNNNNNNGTC 1 cut(s) 566
DseDI GACNNNNNNGTC 1 cut(s) 566
Eam1104I CTCTTC 4 cut(s) 442, 451, 787, 825
EarI CTCTTC 4 cut(s) 442, 451, 787, 825
Eco105I TACGTA 1 cut(s) 679
Eco130I CCWWGG 1 cut(s) 63
Eco147I AGGCCT 1 cut(s) 479
Eco32I GATATC 1 cut(s) 376
Eco47I GGWCC 4 cut(s) 419, 568, 667, 736
Eco88I CYCGRG 1 cut(s) 162
EcoRII CCWGG 2 cut(s) 352, 739
EcoRV GATATC 1 cut(s) 376
EcoT14I CCWWGG 1 cut(s) 63
EcoT22I ATGCAT 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 63
Esp3I CGTCTC 1 cut(s) 830
FaeI CATG 4 cut(s) 140, 209, 419, 875
FaqI GGGAC 1 cut(s) 607
FatI CATG 4 cut(s) 136, 205, 415, 871
Fnu4HI GCNGC 2 cut(s) 180, 900
FokI GGATG 1 cut(s) 725
Fsp4HI GCNGC 2 cut(s) 180, 900
FspBI CTAG 3 cut(s) 386, 563, 779
GluI GCNGC 2 cut(s) 180, 900
HaeIII GGCC 2 cut(s) 383, 479
HapII CCGG 3 cut(s) 103, 639, 707
HgaI GACGC 1 cut(s) 407
Hin1II CATG 4 cut(s) 140, 209, 419, 875
HindIII AAGCTT 3 cut(s) 17, 295, 745
HinfI GANTC 4 cut(s) 68, 619, 812, 930
HpaII CCGG 3 cut(s) 103, 639, 707
HphI GGTGA 4 cut(s) 628, 659, 922, 962
Hpy188I TCNGA 2 cut(s) 475, 811
Hpy188III TCNNGA 4 cut(s) 395, 576, 616, 824
Hpy99I CGWCG 1 cut(s) 401
HpyCH4IV ACGT 1 cut(s) 678
HpyCH4V TGCA 7 cut(s) 83, 88, 199, 281, 335, 887, 902
HpyF10VI GCNNNNNNNGC 4 cut(s) 389, 398, 476, 512
HpyF3I CTNAG 5 cut(s) 25, 270, 293, 516, 684
HpySE526I ACGT 1 cut(s) 678
Hsp92II CATG 4 cut(s) 140, 209, 419, 875
Kzo9I GATC 1 cut(s) 693
LguI GCTCTTC 1 cut(s) 825
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 2 cut(s) 166, 886
LweI GCATC 4 cut(s) 268, 310, 703, 911
MaeI CTAG 3 cut(s) 386, 563, 779
MaeII ACGT 1 cut(s) 678
MaeIII GTNAC 4 cut(s) 647, 781, 850, 920
MalI GATC 1 cut(s) 695
MboI GATC 1 cut(s) 693
MboII GAAGA 6 cut(s) 459, 468, 703, 776, 804, 812
MhlI GDGCHC 2 cut(s) 169, 353
MluCI AATT 5 cut(s) 118, 631, 662, 673, 979
MlyI GAGTC 2 cut(s) 62, 939
MnlI CCTC 8 cut(s) 118, 296, 469, 481, 507, 572, 788, 944
Mph1103I ATGCAT 1 cut(s) 201
MseI TTAA 5 cut(s) 191, 299, 407, 555, 978
MslI CAYNNNNRTG 2 cut(s) 204, 779
MspCI CTTAAG 1 cut(s) 298
MspI CCGG 3 cut(s) 103, 639, 707
MspR9I CCNGG 3 cut(s) 354, 708, 741
Mva1269I GAATGC 1 cut(s) 201
MvaI CCWGG 2 cut(s) 354, 741
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 4 cut(s) 389, 398, 476, 512
NciI CCSGG 1 cut(s) 708
NdeII GATC 1 cut(s) 693
NlaIII CATG 4 cut(s) 140, 209, 419, 875
NlaIV GGNNCC 3 cut(s) 168, 308, 738
NmuCI GTSAC 3 cut(s) 647, 781, 850
NruI TCGCGA 1 cut(s) 396
NsiI ATGCAT 1 cut(s) 201
OliI CACNNNNGTG 1 cut(s) 779
PceI AGGCCT 1 cut(s) 479
PciSI GCTCTTC 1 cut(s) 825
PctI GAATGC 1 cut(s) 201
PfeI GAWTC 2 cut(s) 619, 812
PinAI ACCGGT 1 cut(s) 638
PkrI GCNGC 2 cut(s) 181, 901
PleI GAGTC 2 cut(s) 62, 938
PpsI GAGTC 2 cut(s) 62, 938
Ppu21I YACGTR 1 cut(s) 679
PshBI ATTAAT 2 cut(s) 407, 978
PsiI TTATAA 1 cut(s) 150
Psp6I CCWGG 2 cut(s) 352, 739
PspGI CCWGG 2 cut(s) 352, 739
PspN4I GGNNCC 3 cut(s) 168, 308, 738
PspPI GGNCC 5 cut(s) 382, 419, 568, 667, 736
PstI CTGCAG 1 cut(s) 337
RruI TCGCGA 1 cut(s) 396
RseI CAYNNNNRTG 2 cut(s) 204, 779
SapI GCTCTTC 1 cut(s) 825
SaqAI TTAA 5 cut(s) 191, 299, 407, 555, 978
SatI GCNGC 2 cut(s) 180, 900
Sau3AI GATC 1 cut(s) 693
Sau96I GGNCC 5 cut(s) 382, 419, 568, 667, 736
SchI GAGTC 2 cut(s) 62, 939
ScrFI CCNGG 3 cut(s) 354, 708, 741
SduI GDGCHC 2 cut(s) 169, 353
SfaNI GCATC 4 cut(s) 268, 310, 703, 911
SfcI CTRYAG 3 cut(s) 333, 438, 465
SinI GGWCC 4 cut(s) 419, 568, 667, 736
SmiMI CAYNNNNRTG 2 cut(s) 204, 779
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
SnaBI TACGTA 1 cut(s) 679
Sse9I AATT 5 cut(s) 118, 631, 662, 673, 979
SseBI AGGCCT 1 cut(s) 479
SspMI CTAG 3 cut(s) 386, 563, 779
StuI AGGCCT 1 cut(s) 479
StyD4I CCNGG 3 cut(s) 352, 706, 739
StyI CCWWGG 1 cut(s) 63
TaiI ACGT 1 cut(s) 681
TaqI TCGA 2 cut(s) 617, 905
TasI AATT 5 cut(s) 118, 631, 662, 673, 979
TfiI GAWTC 2 cut(s) 619, 812
Tru1I TTAA 5 cut(s) 191, 299, 407, 555, 978
Tru9I TTAA 5 cut(s) 191, 299, 407, 555, 978
TscAI CASTG 3 cut(s) 90, 608, 943
TseFI GTSAC 3 cut(s) 647, 781, 850
TseI GCWGC 2 cut(s) 179, 899
Tsp45I GTSAC 3 cut(s) 647, 781, 850
TspDTI ATGAA 2 cut(s) 404, 777
TspRI CASTG 3 cut(s) 90, 608, 943
Vha464I CTTAAG 1 cut(s) 298
VpaK11BI GGWCC 4 cut(s) 419, 568, 667, 736
VspI ATTAAT 2 cut(s) 407, 978
XapI RAATTY 1 cut(s) 118
XspI CTAG 3 cut(s) 386, 563, 779
Zsp2I ATGCAT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.