Rw2G045170

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0007613
Physical Location & Seq
Forward (+)
72096594 .. 72104160
7567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G045170.1

Sequence Viewer

Length: 990 bp
ATGGCTCATATCCAAAAGCTTGTCTCAGTTTTTTCACTTCAACTCCTGCTTGTTCTGTTTGCCTTGGACTCCACTACCTATGCACTGCAAGTTGGGTTCTACCAGAAAACCTGTCCAAATTTAGAGGCTATTGTCCATGCGACTACTTATAACTACATATCTCGGGCACCAACTCTTGCTGCTCCCTTGTTAAGAATGCATTTCCATGATTGTTTTGTTAGGGGTTGTGATGGTTCTGTGCTATTGAACTCAACAGCAAACAAACAAGCTGAGAGAGATGCAATCCCCAACCTAAGCTTAAGAGGGTTCCAAGTCATAGATGCTGTAAAATCTGCCGTAGAAATGAAGTGCCCTGGTGTTGTTTCTTGTGCTGATATATTGGCCCTAGTAGCCCGCGACGCAGTATTAATGCTTCATGGTCCATTTTGGGAAGTTCCTACAGGACGAAGAGATGGAAGAGTGTCTATAGCCTCGGAGGCCTTGACAAACTTACCACCTCCTTTTGCTAACATAGCTCAGCTCAAAGGAATGTTTGCTTCAAAGGGTCTAACTGTTAAAGACCTAGTGGTCCTATCAGGTAGAGGGCATACAATTGGAACATCTCACTGTGGACCCGTCACAAATCGATTGTACAACTTCACTGGCCGCGGTGATACAGACCCGAGTTTGGACAAAAATTACATTGCACAGTTGAAGATCAAATGCAAACGAGGAGATATCACTACCACCATTTTGGAGATGGACCCCGGAAGCTTCAAGACGTTTGATGAAGATTACTACACTGTAGTCTCTCAAAGAAGAGGGCTTTTCCAATCTGATGCTGCTCTTCTTGATGACACTGAGACGAAAGCGTACGTGTCACGTCAAGCCACCACTCATGGATCTACATTTCTAAAAGATTTTGCTGCATCAATGGTGAAGATGGGTAAAATTGGAGTCCTCACTGGCTCAGCTGGTGAAATTAGGAAGCAATGTGCTTTTATTAATTGA

Protein Analysis

329

Amino Acids

35.85

Weight (kDa)

8.84

Isoelectric Point (pI)

32.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 48 - 291 2.7e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
AasI GACNNNNNNGTC 1 cut(s) 566
AccB1I GGYRCC 1 cut(s) 166
AccII CGCG 2 cut(s) 396, 648
AciI CCGC 3 cut(s) 394, 646, 648
AclWI GGATC 1 cut(s) 889
AcoI YGGCCR 1 cut(s) 643
AcsI RAATTY 1 cut(s) 118
AfaI GTAC 2 cut(s) 632, 854
AfiI CCNNNNNNNGG 1 cut(s) 667
AflII CTTAAG 1 cut(s) 298
AflIII ACRYGT 1 cut(s) 855
AgsI TTSAA 5 cut(s) 41, 247, 540, 694, 757
AjiI CACGTC 1 cut(s) 863
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 7 cut(s) 19, 269, 297, 515, 520, 753, 953
AluI AGCT 7 cut(s) 19, 269, 297, 515, 520, 753, 953
Alw26I GTCTC 3 cut(s) 28, 793, 836
AlwI GGATC 1 cut(s) 889
Ama87I CYCGRG 2 cut(s) 162, 661
AoxI GGCC 3 cut(s) 381, 477, 643
ApeKI GCWGC 3 cut(s) 179, 821, 905
ApoI RAATTY 1 cut(s) 118
AseI ATTAAT 2 cut(s) 407, 984
AspS9I GGNCC 5 cut(s) 382, 419, 568, 611, 742
AsuC2I CCSGG 1 cut(s) 747
AsuHPI GGTGA 3 cut(s) 662, 928, 968
AvaI CYCGRG 2 cut(s) 162, 661
AvaII GGWCC 4 cut(s) 419, 568, 611, 742
BaeGI GKGCMC 2 cut(s) 169, 353
BanI GGYRCC 1 cut(s) 166
BarI GAAGNNNNNNTAC 2 cut(s) 396, 428
BbvI GCAGC 3 cut(s) 166, 808, 892
BccI CCATC 4 cut(s) 224, 446, 733, 916
BceAI ACGGC 1 cut(s) 320
BciT130I CCWGG 1 cut(s) 354
BcnI CCSGG 1 cut(s) 747
BcoDI GTCTC 3 cut(s) 28, 793, 836
BfaI CTAG 2 cut(s) 386, 563
BfmI CTRYAG 3 cut(s) 438, 465, 783
BfrI CTTAAG 1 cut(s) 298
BglI GCCNNNNNGGC 1 cut(s) 476
BisI GCNGC 4 cut(s) 180, 646, 822, 906
BlpI GCTNAGC 2 cut(s) 516, 949
BlsI GCNGC 4 cut(s) 181, 647, 823, 907
Bme1390I CCNGG 2 cut(s) 354, 747
Bme18I GGWCC 4 cut(s) 419, 568, 611, 742
BmeT110I CYCGRG 2 cut(s) 162, 661
BmgBI CACGTC 1 cut(s) 863
BmgT120I GGNCC 5 cut(s) 382, 419, 568, 611, 742
BmiI GGNNCC 4 cut(s) 168, 308, 613, 744
BmrFI CCNGG 2 cut(s) 354, 747
BmsI GCATC 4 cut(s) 268, 310, 808, 917
Bpu10I CCTNAGC 1 cut(s) 293
Bpu1102I GCTNAGC 2 cut(s) 516, 949
BpuMI CCSGG 1 cut(s) 747
Bsa29I ATCGAT 1 cut(s) 625
BsaAI YACGTR 1 cut(s) 856
BsaJI CCNNGG 5 cut(s) 63, 352, 471, 646, 745
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 1 cut(s) 667
Bse1I ACTGG 2 cut(s) 646, 949
Bse3DI GCAATG 2 cut(s) 681, 977
BseBI CCWGG 1 cut(s) 354
BseCI ATCGAT 1 cut(s) 625
BseDI CCNNGG 5 cut(s) 63, 352, 471, 646, 745
BseLI CCNNNNNNNGG 1 cut(s) 667
BseMI GCAATG 2 cut(s) 681, 977
BseMII CTCAG 5 cut(s) 39, 261, 530, 831, 963
BseNI ACTGG 2 cut(s) 646, 949
BseRI GAGGAG 1 cut(s) 726
BseSI GKGCMC 2 cut(s) 169, 353
BseXI GCAGC 3 cut(s) 166, 808, 892
Bsh1236I CGCG 2 cut(s) 396, 648
BshFI GGCC 3 cut(s) 383, 479, 645
BshNI GGYRCC 1 cut(s) 166
BshVI ATCGAT 1 cut(s) 625
BsiHKCI CYCGRG 2 cut(s) 162, 661
BsiSI CCGG 1 cut(s) 747
BsiWI CGTACG 1 cut(s) 852
BslI CCNNNNNNNGG 1 cut(s) 667
BsmAI GTCTC 3 cut(s) 28, 793, 836
BsmBI CGTCTC 1 cut(s) 836
BsmI GAATGC 1 cut(s) 201
BsnI GGCC 3 cut(s) 383, 479, 645
BsoBI CYCGRG 2 cut(s) 162, 661
Bsp1286I GDGCHC 2 cut(s) 169, 353
Bsp1407I TGTACA 1 cut(s) 630
Bsp143I GATC 2 cut(s) 696, 881
Bsp1720I GCTNAGC 2 cut(s) 516, 949
BspACI CCGC 3 cut(s) 394, 646, 648
BspANI GGCC 3 cut(s) 383, 479, 645
BspCNI CTCAG 5 cut(s) 38, 262, 529, 832, 962
BspDI ATCGAT 1 cut(s) 625
BspFNI CGCG 2 cut(s) 396, 648
BspLI GGNNCC 4 cut(s) 168, 308, 613, 744
BspPI GGATC 1 cut(s) 889
BspQI GCTCTTC 1 cut(s) 831
BspT107I GGYRCC 1 cut(s) 166
BspTI CTTAAG 1 cut(s) 298
BsrDI GCAATG 2 cut(s) 681, 977
BsrGI TGTACA 1 cut(s) 630
BsrI ACTGG 2 cut(s) 646, 949
BssECI CCNNGG 5 cut(s) 63, 352, 471, 646, 745
BssMI GATC 2 cut(s) 696, 881
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 4 cut(s) 553, 608, 690, 784
Bst6I CTCTTC 4 cut(s) 442, 451, 793, 831
BstAFI CTTAAG 1 cut(s) 298
BstAUI TGTACA 1 cut(s) 630
BstBAI YACGTR 1 cut(s) 856
BstC8I GCNNGC 1 cut(s) 394
BstDEI CTNAG 6 cut(s) 25, 270, 293, 516, 840, 949
BstDSI CCRYGG 1 cut(s) 646
BstFNI CGCG 2 cut(s) 396, 648
BstKTI GATC 2 cut(s) 699, 884
BstMAI GTCTC 3 cut(s) 28, 793, 836
BstMBI GATC 2 cut(s) 696, 881
BstMWI GCNNNNNNNGC 4 cut(s) 389, 398, 476, 512
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 2 cut(s) 352, 745
BstSFI CTRYAG 3 cut(s) 438, 465, 783
BstSLI GKGCMC 2 cut(s) 169, 353
BstUI CGCG 2 cut(s) 396, 648
BstV1I GCAGC 3 cut(s) 166, 808, 892
BstX2I RGATCY 1 cut(s) 881
BstXI CCANNNNNNTGG 1 cut(s) 733
BstYI RGATCY 1 cut(s) 881
Bsu15I ATCGAT 1 cut(s) 625
BsuRI GGCC 3 cut(s) 383, 479, 645
BsuTUI ATCGAT 1 cut(s) 625
BtgI CCRYGG 1 cut(s) 646
BtrI CACGTC 1 cut(s) 863
BtsI GCAGTG 1 cut(s) 83
BtsIMutI CAGTG 6 cut(s) 83, 604, 639, 780, 837, 942
Cac8I GCNNGC 1 cut(s) 394
Cfr13I GGNCC 5 cut(s) 382, 419, 568, 611, 742
Cfr42I CCGCGG 1 cut(s) 649
ClaI ATCGAT 1 cut(s) 625
CseI GACGC 1 cut(s) 407
Csp6I GTAC 2 cut(s) 631, 853
CviAII CATG 4 cut(s) 137, 206, 416, 878
CviQI GTAC 2 cut(s) 631, 853
DdeI CTNAG 6 cut(s) 25, 270, 293, 516, 840, 949
DpnI GATC 2 cut(s) 698, 883
DpnII GATC 2 cut(s) 696, 881
DrdI GACNNNNNNGTC 1 cut(s) 566
DseDI GACNNNNNNGTC 1 cut(s) 566
EaeI YGGCCR 1 cut(s) 643
Eam1104I CTCTTC 4 cut(s) 442, 451, 793, 831
EarI CTCTTC 4 cut(s) 442, 451, 793, 831
Eco130I CCWWGG 1 cut(s) 63
Eco147I AGGCCT 1 cut(s) 479
Eco32I GATATC 1 cut(s) 718
Eco47I GGWCC 4 cut(s) 419, 568, 611, 742
Eco88I CYCGRG 2 cut(s) 162, 661
EcoRII CCWGG 1 cut(s) 352
EcoRV GATATC 1 cut(s) 718
EcoT14I CCWWGG 1 cut(s) 63
EcoT22I ATGCAT 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 63
Esp3I CGTCTC 1 cut(s) 836
FaeI CATG 4 cut(s) 140, 209, 419, 881
FatI CATG 4 cut(s) 136, 205, 415, 877
FauI CCCGC 1 cut(s) 401
Fnu4HI GCNGC 4 cut(s) 180, 646, 822, 906
Fsp4HI GCNGC 4 cut(s) 180, 646, 822, 906
FspBI CTAG 2 cut(s) 386, 563
GluI GCNGC 4 cut(s) 180, 646, 822, 906
HaeIII GGCC 3 cut(s) 383, 479, 645
HapII CCGG 1 cut(s) 747
HgaI GACGC 1 cut(s) 407
Hin1II CATG 4 cut(s) 140, 209, 419, 881
HindIII AAGCTT 3 cut(s) 17, 295, 751
HinfI GANTC 2 cut(s) 68, 936
HpaII CCGG 1 cut(s) 747
HphI GGTGA 3 cut(s) 662, 928, 968
Hpy166II GTNNAC 1 cut(s) 611
Hpy188I TCNGA 2 cut(s) 475, 817
Hpy188III TCNNGA 2 cut(s) 757, 830
Hpy8I GTNNAC 1 cut(s) 611
Hpy99I CGWCG 1 cut(s) 401
HpyCH4III ACNGT 4 cut(s) 553, 608, 690, 784
HpyCH4IV ACGT 3 cut(s) 761, 855, 862
HpyCH4V TGCA 7 cut(s) 83, 88, 199, 281, 686, 705, 908
HpyF10VI GCNNNNNNNGC 4 cut(s) 389, 398, 476, 512
HpyF3I CTNAG 6 cut(s) 25, 270, 293, 516, 840, 949
HpySE526I ACGT 3 cut(s) 761, 855, 862
Hsp92II CATG 4 cut(s) 140, 209, 419, 881
KspI CCGCGG 1 cut(s) 649
Kzo9I GATC 2 cut(s) 696, 881
LguI GCTCTTC 1 cut(s) 831
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 3 cut(s) 166, 808, 892
LweI GCATC 4 cut(s) 268, 310, 808, 917
MaeI CTAG 2 cut(s) 386, 563
MaeII ACGT 3 cut(s) 761, 855, 862
MaeIII GTNAC 2 cut(s) 616, 858
MalI GATC 2 cut(s) 698, 883
MboI GATC 2 cut(s) 696, 881
MboII GAAGA 7 cut(s) 459, 468, 706, 782, 810, 818, 931
MfeI CAATTG 1 cut(s) 591
MflI RGATCY 1 cut(s) 881
MhlI GDGCHC 2 cut(s) 169, 353
MluCI AATT 6 cut(s) 118, 591, 676, 930, 960, 985
MlyI GAGTC 2 cut(s) 62, 945
MnlI CCTC 9 cut(s) 118, 296, 469, 481, 507, 575, 704, 794, 950
Mph1103I ATGCAT 1 cut(s) 201
MseI TTAA 5 cut(s) 191, 299, 407, 555, 984
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 2 cut(s) 648, 953
MspCI CTTAAG 1 cut(s) 298
MspI CCGG 1 cut(s) 747
MspR9I CCNGG 2 cut(s) 354, 747
MunI CAATTG 1 cut(s) 591
Mva1269I GAATGC 1 cut(s) 201
MvaI CCWGG 1 cut(s) 354
MvnI CGCG 2 cut(s) 396, 648
MwoI GCNNNNNNNGC 4 cut(s) 389, 398, 476, 512
NciI CCSGG 1 cut(s) 747
NdeII GATC 2 cut(s) 696, 881
NlaIII CATG 4 cut(s) 140, 209, 419, 881
NlaIV GGNNCC 4 cut(s) 168, 308, 613, 744
NmuCI GTSAC 2 cut(s) 616, 858
NsiI ATGCAT 1 cut(s) 201
PceI AGGCCT 1 cut(s) 479
PciSI GCTCTTC 1 cut(s) 831
PctI GAATGC 1 cut(s) 201
Pfl23II CGTACG 1 cut(s) 852
PkrI GCNGC 4 cut(s) 181, 647, 823, 907
PleI GAGTC 2 cut(s) 62, 944
PpsI GAGTC 2 cut(s) 62, 944
Ppu21I YACGTR 1 cut(s) 856
PshBI ATTAAT 2 cut(s) 407, 984
PsiI TTATAA 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspLI CGTACG 1 cut(s) 852
PspN4I GGNNCC 4 cut(s) 168, 308, 613, 744
PspPI GGNCC 5 cut(s) 382, 419, 568, 611, 742
PsuI RGATCY 1 cut(s) 881
PvuII CAGCTG 1 cut(s) 953
RsaI GTAC 2 cut(s) 632, 854
RsaNI GTAC 2 cut(s) 631, 853
RseI CAYNNNNRTG 1 cut(s) 204
SacII CCGCGG 1 cut(s) 649
SapI GCTCTTC 1 cut(s) 831
SaqAI TTAA 5 cut(s) 191, 299, 407, 555, 984
SatI GCNGC 4 cut(s) 180, 646, 822, 906
Sau3AI GATC 2 cut(s) 696, 881
Sau96I GGNCC 5 cut(s) 382, 419, 568, 611, 742
SchI GAGTC 2 cut(s) 62, 945
ScrFI CCNGG 2 cut(s) 354, 747
SduI GDGCHC 2 cut(s) 169, 353
SfaNI GCATC 4 cut(s) 268, 310, 808, 917
SfcI CTRYAG 3 cut(s) 438, 465, 783
Sfr303I CCGCGG 1 cut(s) 649
SgrBI CCGCGG 1 cut(s) 649
SinI GGWCC 4 cut(s) 419, 568, 611, 742
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
Sse9I AATT 6 cut(s) 118, 591, 676, 930, 960, 985
SseBI AGGCCT 1 cut(s) 479
SsiI CCGC 3 cut(s) 394, 646, 648
SspMI CTAG 2 cut(s) 386, 563
StuI AGGCCT 1 cut(s) 479
StyD4I CCNGG 2 cut(s) 352, 745
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 4 cut(s) 553, 608, 690, 784
TaiI ACGT 3 cut(s) 764, 858, 865
TaqI TCGA 1 cut(s) 625
TasI AATT 6 cut(s) 118, 591, 676, 930, 960, 985
TatI WGTACW 1 cut(s) 630
TauI GCSGC 1 cut(s) 648
Tru1I TTAA 5 cut(s) 191, 299, 407, 555, 984
Tru9I TTAA 5 cut(s) 191, 299, 407, 555, 984
TscAI CASTG 6 cut(s) 90, 611, 646, 787, 844, 949
TseFI GTSAC 2 cut(s) 616, 858
TseI GCWGC 3 cut(s) 179, 821, 905
Tsp45I GTSAC 2 cut(s) 616, 858
TspDTI ATGAA 3 cut(s) 359, 404, 783
TspRI CASTG 6 cut(s) 90, 611, 646, 787, 844, 949
Vha464I CTTAAG 1 cut(s) 298
VpaK11BI GGWCC 4 cut(s) 419, 568, 611, 742
VspI ATTAAT 2 cut(s) 407, 984
XapI RAATTY 1 cut(s) 118
XcmI CCANNNNNNNNNTGG 1 cut(s) 736
XspI CTAG 2 cut(s) 386, 563
Zsp2I ATGCAT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.