RchiOBHm_Chr2g0159971

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0007613
Physical Location & Seq
Forward (+)
75998276 .. 75999470
1195 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52850

Sequence Viewer

Length: 837 bp
ATGGCTATTCATCAAAAGCTTCTCTCAGTTTTTGTCTTGCTTTTTCTGTTGGCTTTCAACTTGAGCTATGCGCAGAACTTGAAAGTTCGGTTCTACCATAAAACATGCCCAAATCTGGAGGCCATTGTTGCAGCGACTACTAATCAGTACATATCTCGGGCACCAACACTTGCTGCTCCTTTATTGAGGATGCATTTTCATGATTGCTTTGTTAGGGGATGTGATGGCTCTGTGCTAATTAATTCAACAGCAAGCAATCAAGCAGAGAAAGCAAATACCGCCAACCTGAGCTTGAGAGGGTTCCATGTCATTGACGCTGTAAAATCTGCAGTACGTAGAAAAGAAGTGTCCCGGCATTGTTTCCTGTGCAGATATCTTGGCCTTCATCATGGTGCATTTTGGCAAGTTCCAACAGGACGTAGAGATGGGAGAGTGTCCTTAGCCTCAGAGGCCGCAAGAAACTTACCTCCTCCATTTGCCAACATTACTCAGCTAAAAGCAATGTTTAGCGGAAAGGGTTTAAGTGTTAAAGACCTTGCGGTTCTATCAGGAGGGCATACAATTGGAACATCTCACTGTGGACCCGTCACAAATCGATTGTACAACTTCACTGGCCGCGGTGATACAGACCCGAGTTTGGACAAAAATTACATTGCACAGTTGAAGATCAAATGCAAACCAGGAGATATCACTACCACCATTTTGGCGATGGACCCCGGAAGCTTCAAGACGTTTGATGAAGATTACTACACTGTAGTCTCTAAAAGAAGAGGGCTTTTCCAATCTGATCACTATGCCAAAAGTGGTATCAGACGACAGACAGAAACTGTTGTCTGA

Protein Analysis

278

Amino Acids

30.78

Weight (kDa)

9.75

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 45 - 266 1.6e-57 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 72
AccB1I GGYRCC 1 cut(s) 160
AccII CGCG 1 cut(s) 618
AciI CCGC 6 cut(s) 279, 453, 510, 539, 616, 618
AcoI YGGCCR 1 cut(s) 613
AfaI GTAC 3 cut(s) 149, 333, 602
AfiI CCNNNNNNNGG 2 cut(s) 115, 637
AgsI TTSAA 5 cut(s) 58, 82, 246, 664, 727
AjnI CCWGG 1 cut(s) 679
AluBI AGCT 5 cut(s) 19, 66, 291, 493, 723
AluI AGCT 5 cut(s) 19, 66, 291, 493, 723
Alw26I GTCTC 1 cut(s) 763
AlwNI CAGNNNCTG 1 cut(s) 827
Ama87I CYCGRG 2 cut(s) 156, 631
AoxI GGCC 4 cut(s) 120, 379, 450, 613
ApeKI GCWGC 2 cut(s) 131, 173
AseI ATTAAT 1 cut(s) 240
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 2 cut(s) 581, 712
AsuC2I CCSGG 2 cut(s) 352, 717
AsuHPI GGTGA 1 cut(s) 632
AvaI CYCGRG 2 cut(s) 156, 631
AvaII GGWCC 2 cut(s) 581, 712
BaeGI GKGCMC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 160
BbvI GCAGC 2 cut(s) 143, 160
BccI CCATC 3 cut(s) 218, 419, 703
BciT130I CCWGG 1 cut(s) 681
BclI TGATCA 1 cut(s) 787
BcnI CCSGG 2 cut(s) 352, 717
BcoDI GTCTC 1 cut(s) 763
BfmI CTRYAG 2 cut(s) 327, 753
BglI GCCNNNNNGGC 1 cut(s) 449
BisI GCNGC 4 cut(s) 132, 174, 453, 616
BlsI GCNGC 4 cut(s) 133, 175, 454, 617
Bme1390I CCNGG 3 cut(s) 352, 681, 717
Bme18I GGWCC 2 cut(s) 581, 712
BmeT110I CYCGRG 2 cut(s) 156, 631
BmgT120I GGNCC 2 cut(s) 581, 712
BmiI GGNNCC 4 cut(s) 162, 302, 583, 714
BmrFI CCNGG 3 cut(s) 352, 681, 717
BmsI GCATC 1 cut(s) 180
BpmI CTGGAG 1 cut(s) 137
Bpu10I CCTNAGC 2 cut(s) 287, 439
BpuEI CTTGAG 2 cut(s) 82, 313
BpuMI CCSGG 2 cut(s) 352, 717
Bsa29I ATCGAT 1 cut(s) 595
BsaAI YACGTR 1 cut(s) 335
BsaJI CCNNGG 2 cut(s) 616, 715
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 637
Bse1I ACTGG 1 cut(s) 616
Bse3DI GCAATG 2 cut(s) 507, 651
BseBI CCWGG 1 cut(s) 681
BseCI ATCGAT 1 cut(s) 595
BseDI CCNNGG 2 cut(s) 616, 715
BseGI GGATG 2 cut(s) 195, 224
BseLI CCNNNNNNNGG 2 cut(s) 115, 637
BseMI GCAATG 2 cut(s) 507, 651
BseMII CTCAG 4 cut(s) 39, 278, 459, 503
BseNI ACTGG 1 cut(s) 616
BseRI GAGGAG 1 cut(s) 459
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 2 cut(s) 143, 160
BsgI GTGCAG 1 cut(s) 388
Bsh1236I CGCG 1 cut(s) 618
BshFI GGCC 4 cut(s) 122, 381, 452, 615
BshNI GGYRCC 1 cut(s) 160
BshVI ATCGAT 1 cut(s) 595
BsiHKCI CYCGRG 2 cut(s) 156, 631
BsiSI CCGG 2 cut(s) 352, 717
BslFI GGGAC 1 cut(s) 334
BslI CCNNNNNNNGG 2 cut(s) 115, 637
BsmAI GTCTC 1 cut(s) 763
BsmFI GGGAC 1 cut(s) 334
BsnI GGCC 4 cut(s) 122, 381, 452, 615
BsoBI CYCGRG 2 cut(s) 156, 631
Bsp1286I GDGCHC 1 cut(s) 163
Bsp1407I TGTACA 1 cut(s) 600
Bsp143I GATC 2 cut(s) 666, 787
BspACI CCGC 6 cut(s) 279, 453, 510, 539, 616, 618
BspANI GGCC 4 cut(s) 122, 381, 452, 615
BspCNI CTCAG 4 cut(s) 38, 279, 458, 502
BspDI ATCGAT 1 cut(s) 595
BspFNI CGCG 1 cut(s) 618
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 4 cut(s) 162, 302, 583, 714
BspMAI CTGCAG 1 cut(s) 331
BspT107I GGYRCC 1 cut(s) 160
BsrDI GCAATG 2 cut(s) 507, 651
BsrGI TGTACA 1 cut(s) 600
BsrI ACTGG 1 cut(s) 616
BssECI CCNNGG 2 cut(s) 616, 715
BssMI GATC 2 cut(s) 666, 787
Bst2UI CCWGG 1 cut(s) 681
Bst4CI ACNGT 4 cut(s) 578, 660, 754, 829
Bst6I CTCTTC 1 cut(s) 763
BstAUI TGTACA 1 cut(s) 600
BstBAI YACGTR 1 cut(s) 335
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 5 cut(s) 25, 287, 439, 445, 489
BstDSI CCRYGG 1 cut(s) 616
BstF5I GGATG 2 cut(s) 195, 224
BstFNI CGCG 1 cut(s) 618
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 2 cut(s) 669, 790
BstMAI GTCTC 1 cut(s) 763
BstMBI GATC 2 cut(s) 666, 787
BstMWI GCNNNNNNNGC 4 cut(s) 128, 269, 278, 449
BstNI CCWGG 1 cut(s) 681
BstNSI RCATGY 1 cut(s) 108
BstSCI CCNGG 3 cut(s) 350, 679, 715
BstSFI CTRYAG 2 cut(s) 327, 753
BstSLI GKGCMC 1 cut(s) 163
BstSNI TACGTA 1 cut(s) 335
BstUI CGCG 1 cut(s) 618
BstV1I GCAGC 2 cut(s) 143, 160
BstXI CCANNNNNNTGG 1 cut(s) 703
Bsu15I ATCGAT 1 cut(s) 595
BsuRI GGCC 4 cut(s) 122, 381, 452, 615
BsuTUI ATCGAT 1 cut(s) 595
BtgI CCRYGG 1 cut(s) 616
BtgZI GCGATG 1 cut(s) 722
BtsCI GGATG 2 cut(s) 195, 224
BtsIMutI CAGTG 3 cut(s) 574, 609, 750
Cac8I GCNNGC 1 cut(s) 253
CaiI CAGNNNCTG 1 cut(s) 827
CciI TCATGA 1 cut(s) 199
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 581, 712
Cfr42I CCGCGG 1 cut(s) 619
ClaI ATCGAT 1 cut(s) 595
CseI GACGC 1 cut(s) 323
Csp6I GTAC 3 cut(s) 148, 332, 601
CviAII CATG 4 cut(s) 105, 200, 305, 389
CviQI GTAC 3 cut(s) 148, 332, 601
DdeI CTNAG 5 cut(s) 25, 287, 439, 445, 489
DpnI GATC 2 cut(s) 668, 789
DpnII GATC 2 cut(s) 666, 787
EaeI YGGCCR 1 cut(s) 613
Eam1104I CTCTTC 1 cut(s) 763
EarI CTCTTC 1 cut(s) 763
Eco105I TACGTA 1 cut(s) 335
Eco32I GATATC 2 cut(s) 374, 688
Eco47I GGWCC 2 cut(s) 581, 712
Eco88I CYCGRG 2 cut(s) 156, 631
EcoRII CCWGG 1 cut(s) 679
EcoRV GATATC 2 cut(s) 374, 688
EcoT22I ATGCAT 1 cut(s) 195
FaeI CATG 4 cut(s) 108, 203, 308, 392
FaiI YATR 9 cut(s) 69, 99, 106, 152, 201, 306, 390, 558, 795
FaqI GGGAC 1 cut(s) 334
FatI CATG 4 cut(s) 104, 199, 304, 388
FbaI TGATCA 1 cut(s) 787
Fnu4HI GCNGC 4 cut(s) 132, 174, 453, 616
FokI GGATG 2 cut(s) 202, 231
Fsp4HI GCNGC 4 cut(s) 132, 174, 453, 616
FspI TGCGCA 1 cut(s) 72
GlaI GCGC 1 cut(s) 72
GluI GCNGC 4 cut(s) 132, 174, 453, 616
GsuI CTGGAG 1 cut(s) 137
HaeIII GGCC 4 cut(s) 122, 381, 452, 615
HapII CCGG 2 cut(s) 352, 717
HgaI GACGC 1 cut(s) 323
HhaI GCGC 1 cut(s) 73
Hin1II CATG 4 cut(s) 108, 203, 308, 392
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HindIII AAGCTT 2 cut(s) 17, 721
HpaII CCGG 2 cut(s) 352, 717
HphI GGTGA 1 cut(s) 632
Hpy166II GTNNAC 1 cut(s) 581
Hpy188I TCNGA 4 cut(s) 448, 787, 812, 836
Hpy188III TCNNGA 4 cut(s) 116, 200, 549, 727
Hpy8I GTNNAC 1 cut(s) 581
HpyAV CCTTC 1 cut(s) 392
HpyCH4III ACNGT 4 cut(s) 578, 660, 754, 829
HpyCH4IV ACGT 3 cut(s) 334, 418, 731
HpyCH4V TGCA 7 cut(s) 131, 193, 329, 369, 395, 656, 675
HpyF10VI GCNNNNNNNGC 4 cut(s) 128, 269, 278, 449
HpyF3I CTNAG 5 cut(s) 25, 287, 439, 445, 489
HpySE526I ACGT 3 cut(s) 334, 418, 731
Hsp92II CATG 4 cut(s) 108, 203, 308, 392
HspAI GCGC 1 cut(s) 71
Ksp22I TGATCA 1 cut(s) 787
KspI CCGCGG 1 cut(s) 619
Kzo9I GATC 2 cut(s) 666, 787
LmnI GCTCC 1 cut(s) 181
Lsp1109I GCAGC 2 cut(s) 143, 160
LweI GCATC 1 cut(s) 180
MaeII ACGT 3 cut(s) 334, 418, 731
MaeIII GTNAC 1 cut(s) 586
MalI GATC 2 cut(s) 668, 789
MboI GATC 2 cut(s) 666, 787
MboII GAAGA 3 cut(s) 676, 752, 780
MfeI CAATTG 1 cut(s) 561
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 4 cut(s) 237, 241, 561, 646
MmeI TCCRAC 1 cut(s) 434
MnlI CCTC 9 cut(s) 112, 180, 290, 442, 454, 477, 480, 545, 764
Mph1103I ATGCAT 1 cut(s) 195
MseI TTAA 3 cut(s) 240, 521, 528
MslI CAYNNNNRTG 2 cut(s) 198, 390
MspA1I CMGCKG 1 cut(s) 618
MspI CCGG 2 cut(s) 352, 717
MspR9I CCNGG 3 cut(s) 352, 681, 717
MunI CAATTG 1 cut(s) 561
MvaI CCWGG 1 cut(s) 681
MvnI CGCG 1 cut(s) 618
MwoI GCNNNNNNNGC 4 cut(s) 128, 269, 278, 449
NciI CCSGG 2 cut(s) 352, 717
NdeII GATC 2 cut(s) 666, 787
NlaIII CATG 4 cut(s) 108, 203, 308, 392
NlaIV GGNNCC 4 cut(s) 162, 302, 583, 714
NmuCI GTSAC 1 cut(s) 586
NsbI TGCGCA 1 cut(s) 72
NsiI ATGCAT 1 cut(s) 195
NspI RCATGY 1 cut(s) 108
PagI TCATGA 1 cut(s) 199
PkrI GCNGC 4 cut(s) 133, 175, 454, 617
Ppu21I YACGTR 1 cut(s) 335
PshBI ATTAAT 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 679
PspGI CCWGG 1 cut(s) 679
PspN4I GGNNCC 4 cut(s) 162, 302, 583, 714
PspPI GGNCC 2 cut(s) 581, 712
PstI CTGCAG 1 cut(s) 331
PstNI CAGNNNCTG 1 cut(s) 827
RsaI GTAC 3 cut(s) 149, 333, 602
RsaNI GTAC 3 cut(s) 148, 332, 601
RseI CAYNNNNRTG 2 cut(s) 198, 390
SacII CCGCGG 1 cut(s) 619
SaqAI TTAA 3 cut(s) 240, 521, 528
SatI GCNGC 4 cut(s) 132, 174, 453, 616
Sau3AI GATC 2 cut(s) 666, 787
Sau96I GGNCC 2 cut(s) 581, 712
ScrFI CCNGG 3 cut(s) 352, 681, 717
SduI GDGCHC 1 cut(s) 163
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 2 cut(s) 327, 753
Sfr303I CCGCGG 1 cut(s) 619
SgrBI CCGCGG 1 cut(s) 619
SinI GGWCC 2 cut(s) 581, 712
SmiMI CAYNNNNRTG 2 cut(s) 198, 390
SmlI CTYRAG 2 cut(s) 61, 292
SmoI CTYRAG 2 cut(s) 61, 292
SnaBI TACGTA 1 cut(s) 335
Sse9I AATT 4 cut(s) 237, 241, 561, 646
SsiI CCGC 6 cut(s) 279, 453, 510, 539, 616, 618
StyD4I CCNGG 3 cut(s) 350, 679, 715
TaaI ACNGT 4 cut(s) 578, 660, 754, 829
TaiI ACGT 3 cut(s) 337, 421, 734
TaqI TCGA 1 cut(s) 595
TasI AATT 4 cut(s) 237, 241, 561, 646
TatI WGTACW 2 cut(s) 147, 600
TauI GCSGC 2 cut(s) 455, 618
Tru1I TTAA 3 cut(s) 240, 521, 528
Tru9I TTAA 3 cut(s) 240, 521, 528
TscAI CASTG 3 cut(s) 581, 616, 757
TseFI GTSAC 1 cut(s) 586
TseI GCWGC 2 cut(s) 131, 173
Tsp45I GTSAC 1 cut(s) 586
TspDTI ATGAA 3 cut(s) 188, 374, 753
TspRI CASTG 3 cut(s) 581, 616, 757
VpaK11BI GGWCC 2 cut(s) 581, 712
VspI ATTAAT 1 cut(s) 240
XceI RCATGY 1 cut(s) 108
XcmI CCANNNNNNNNNTGG 1 cut(s) 706
Zsp2I ATGCAT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.