AT1G05820

Signal peptide peptidase-like 5

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
1749478 .. 1754036
4559 bp
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UTR
Exon/CDS
Intron
AT1G05820.4

Sequence Viewer

Length: 1611 bp
ATGTCTTTACCTCCGTTTACTTGCCGCCTTCTCGCGGCGGCGGCGGCTCTCTATCTGATAGGTCTGCTGTGCGTCGGAGCTGACACGAAAGATGTTACCGCTCCCAAAATTCCTGGTTGCTCCAATGAATTTCAAATGGTCAAAGTTGAGAATTGGGTCAACGGAGAAAACGGTGAGACTTTTACCGCCATGACTGCACAGTTTGGCACCATGCTCCCGTCTGATAAAGACAAAGCTGTTAAACTTCCGGTTGCTCTTACCACTCCTTTGGACAGTTGCTCCAATTTAACTTCAAAGCTATCTTGGTCTATAGCGTTATCTGTACGTGGCGAGTGTGCTTTCACAGTTAAGGCTCAAGTTGCACAGGCAGGAGGAGCTGCAGCTTTGGTGTTAATTAACGACAAAGAAGAGCTTGATGAGATGGTTTGTGGTGAGAAAGATACCTCCTTAAATGTTTCTATACCTATTTTGATGATTACAACGTCATCTGGAGATGCCCTGAAGAAATCCATTATGCAAAATAAGAAAGTGGAGCTTTTATTGTATGCTCCAAAGAGCCCAATTGTGGATTATGCAGTGGTCTTCCTCTGGCTAATGTCTGTTGGAACAGTTTTTGTTGCTTCTGTTTGGTCACATGTTACCAGTCCGAAGAAGAATGATGAGCAGTACGATGAATTATCACCCAAGAAATCTTCGAATGTTGACGCTACCAAAGGTGGTGCTGAAGAGGAAACTCTTGATATTAGTGCTATGGGTGCTGTTATCTTTGTCATATCAGCGTCCACATTCCTCGTTTTGCTCTTCTTCTTCATGTCATCGTGGTTTATCTTGATCCTGACCATATTTTTCGTCATTGGTGGTATGCAGGGAATGCATAATATTAACGTTACACTCATAACAAGGAGATGCAGTAAATGTGGCCAGAAGAATTTAAAACTACCTCTGCTTGGGAATACCTCGATTCTCTCACTCGTGGTTCTGTTATTCTGCTTTGTGGTTGCTATCCTCTGGTTTATGAATCGCAAAACTTCGCACGCATGGGCCGGGCAAGATATTTTTGGTATTTGCATGATGATTAATGTCTTGCAAGTAGCTCGGCTACCTAATATCAGGGTTGCTACCATTCTTCTCTGTTGTGCATTTTTCTATGACATCTTTTGGGTATTCATATCACCACTAATCTTCAAGCAAAGTGTAATGATTGCGGTTGCACGTGGGAGCAAAGACACTGGAGAATCTATTCCCATGCTTTTGAGAATTCCACGGCTTTCTGATCCATGGGGTGGTTACAACATGATCGGTTTTGGAGACATTCTTTTCCCGGGCCTTCTCATATGCTTTATTTTCAGATTTGACAAGGAAAATAACAAGGGGGTCTCGAATGGATATTTTCCGTGGTTGATGTTTGGCTACGGACTTGGCCTCTTCTTAACATACTTGGGATTGTATGTTATGAATGGACACGGTCAACCTGCATTGCTATATCTTGTCCCTTGCACGCTCGGAATCACGGTCATTCTAGGGTTGGTGAGGAAAGAACTCAGAGACTTGTGGAACTACGGGACTCAACAGCCTTCAGCTGCAGACGTAAATCCATCTCCAGAAGCATAA

Protein Analysis

536

Amino Acids

58.73

Weight (kDa)

7.41

Isoelectric Point (pI)

34.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_A22B PF04258 102 - 383 1.4e-104 Signal peptide peptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1480
AccB1I GGYRCC 1 cut(s) 206
AccB7I CCANNNNNTGG 1 cut(s) 1283
AccBSI CCGCTC 1 cut(s) 101
AccII CGCG 1 cut(s) 35
AciI CCGC 8 cut(s) 25, 35, 38, 41, 44, 99, 186, 1205
AclI AACGTT 1 cut(s) 885
AclWI GGATC 2 cut(s) 826, 1268
AcoI YGGCCR 1 cut(s) 919
AcsI RAATTY 4 cut(s) 108, 128, 928, 1257
AcuI CTGAAG 3 cut(s) 521, 744, 1560
AcvI CACGTG 1 cut(s) 1214
AfaI GTAC 2 cut(s) 324, 668
AfiI CCNNNNNNNGG 4 cut(s) 34, 565, 947, 1283
AflIII ACRYGT 1 cut(s) 634
AgsI TTSAA 3 cut(s) 134, 294, 1186
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 9 cut(s) 80, 236, 298, 377, 383, 412, 535, 1094, 1580
AluI AGCT 9 cut(s) 80, 236, 298, 377, 383, 412, 535, 1094, 1580
Alw26I GTCTC 4 cut(s) 170, 1302, 1381, 1539
AlwI GGATC 2 cut(s) 826, 1268
Ama87I CYCGRG 1 cut(s) 1321
AoxI GGCC 4 cut(s) 919, 1041, 1324, 1420
ApeKI GCWGC 3 cut(s) 377, 380, 1580
ApoI RAATTY 4 cut(s) 108, 128, 928, 1257
AseI ATTAAT 1 cut(s) 1077
Asp700I GAANNNNTTC 1 cut(s) 1239
AspS9I GGNCC 2 cut(s) 1041, 1324
AsuC2I CCSGG 3 cut(s) 1045, 1322, 1323
AsuHPI GGTGA 5 cut(s) 185, 443, 672, 1164, 1540
AsuII TTCGAA 1 cut(s) 695
AvaI CYCGRG 1 cut(s) 1321
BalI TGGCCA 1 cut(s) 921
BanI GGYRCC 1 cut(s) 206
BanII GRGCYC 1 cut(s) 560
BauI CACGAG 1 cut(s) 971
BbrPI CACGTG 1 cut(s) 1214
BbsI GAAGAC 1 cut(s) 574
BbvI GCAGC 3 cut(s) 364, 392, 1567
BccI CCATC 2 cut(s) 415, 1603
BceAI ACGGC 1 cut(s) 1280
BcgI CGANNNNNNTGC 2 cut(s) 1076, 1110
BciT130I CCWGG 1 cut(s) 114
BcnI CCSGG 3 cut(s) 1045, 1322, 1323
BcoDI GTCTC 4 cut(s) 170, 1302, 1381, 1539
BfaI CTAG 1 cut(s) 1520
BfmI CTRYAG 3 cut(s) 309, 378, 1581
BfuAI ACCTGC 1 cut(s) 1480
BisI GCNGC 8 cut(s) 25, 36, 39, 42, 45, 378, 381, 1581
BlsI GCNGC 8 cut(s) 26, 37, 40, 43, 46, 379, 382, 1582
Bme1390I CCNGG 4 cut(s) 114, 1045, 1322, 1323
BmeT110I CYCGRG 1 cut(s) 1321
BmgT120I GGNCC 2 cut(s) 1041, 1324
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 4 cut(s) 114, 1045, 1322, 1323
BmsI GCATC 2 cut(s) 484, 896
BpiI GAAGAC 1 cut(s) 574
BpmI CTGGAG 3 cut(s) 510, 1251, 1584
Bpu14I TTCGAA 1 cut(s) 695
BpuEI CTTGAG 1 cut(s) 339
BpuMI CCSGG 3 cut(s) 1045, 1322, 1323
BsaAI YACGTR 2 cut(s) 326, 1214
BsaI GGTCTC 1 cut(s) 1381
BsaJI CCNNGG 4 cut(s) 1262, 1277, 1321, 1394
BsaWI WCCGGW 1 cut(s) 247
BsaXI ACNNNNNCTCC 4 cut(s) 263, 293, 895, 925
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 565, 947, 1283
Bse1I ACTGG 2 cut(s) 642, 1234
Bse3DI GCAATG 1 cut(s) 1475
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 4 cut(s) 1262, 1277, 1321, 1394
BseLI CCNNNNNNNGG 4 cut(s) 34, 565, 947, 1283
BseMI GCAATG 1 cut(s) 1475
BseMII CTCAG 1 cut(s) 1555
BseNI ACTGG 2 cut(s) 642, 1234
BseRI GAGGAG 1 cut(s) 387
BseXI GCAGC 3 cut(s) 364, 392, 1567
BsgI GTGCAG 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 35
BshFI GGCC 4 cut(s) 921, 1043, 1326, 1422
BshNI GGYRCC 1 cut(s) 206
BsiHKCI CYCGRG 1 cut(s) 1321
BsiSI CCGG 3 cut(s) 248, 1044, 1322
BslFI GGGAC 2 cut(s) 1475, 1576
BslI CCNNNNNNNGG 4 cut(s) 34, 565, 947, 1283
BsmAI GTCTC 4 cut(s) 170, 1302, 1381, 1539
BsmFI GGGAC 2 cut(s) 1475, 1576
BsmI GAATGC 1 cut(s) 876
BsnI GGCC 4 cut(s) 921, 1043, 1326, 1422
Bso31I GGTCTC 1 cut(s) 1381
BsoBI CYCGRG 1 cut(s) 1321
Bsp119I TTCGAA 1 cut(s) 695
Bsp1286I GDGCHC 1 cut(s) 560
Bsp143I GATC 3 cut(s) 831, 1273, 1296
Bsp19I CCATGG 1 cut(s) 1277
BspACI CCGC 8 cut(s) 25, 35, 38, 41, 44, 99, 186, 1205
BspANI GGCC 4 cut(s) 921, 1043, 1326, 1422
BspCNI CTCAG 1 cut(s) 1554
BspFNI CGCG 1 cut(s) 35
BspLI GGNNCC 1 cut(s) 208
BspMAI CTGCAG 2 cut(s) 382, 1585
BspMI ACCTGC 1 cut(s) 1480
BspPI GGATC 2 cut(s) 826, 1268
BspQI GCTCTTC 2 cut(s) 402, 806
BspT104I TTCGAA 1 cut(s) 695
BspT107I GGYRCC 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 1381
BsrBI CCGCTC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 1475
BsrI ACTGG 2 cut(s) 642, 1234
BssECI CCNNGG 4 cut(s) 1262, 1277, 1321, 1394
BssMI GATC 3 cut(s) 831, 1273, 1296
BssSI CACGAG 1 cut(s) 971
BssT1I CCWWGG 1 cut(s) 1277
Bst2BI CACGAG 1 cut(s) 971
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 7 cut(s) 173, 201, 275, 346, 610, 1466, 1513
Bst6I CTCTTC 4 cut(s) 402, 720, 806, 1430
BstAPI GCANNNNNTGC 1 cut(s) 871
BstBAI YACGTR 2 cut(s) 326, 1214
BstBI TTCGAA 1 cut(s) 695
BstC8I GCNNGC 2 cut(s) 1035, 1499
BstDEI CTNAG 1 cut(s) 1541
BstDSI CCRYGG 3 cut(s) 1262, 1277, 1394
BstFNI CGCG 1 cut(s) 35
BstKTI GATC 3 cut(s) 834, 1276, 1299
BstMAI GTCTC 4 cut(s) 170, 1302, 1381, 1539
BstMBI GATC 3 cut(s) 831, 1273, 1296
BstMWI GCNNNNNNNGC 7 cut(s) 41, 44, 194, 359, 374, 755, 871
BstNI CCWGG 1 cut(s) 114
BstNSI RCATGY 1 cut(s) 638
BstSCI CCNGG 4 cut(s) 112, 1043, 1320, 1321
BstSFI CTRYAG 3 cut(s) 309, 378, 1581
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 3 cut(s) 364, 392, 1567
BstV2I GAAGAC 1 cut(s) 574
BstXI CCANNNNNNTGG 1 cut(s) 268
BsuRI GGCC 4 cut(s) 921, 1043, 1326, 1422
BtgI CCRYGG 3 cut(s) 1262, 1277, 1394
BtsI GCAGTG 1 cut(s) 582
BtsIMutI CAGTG 2 cut(s) 582, 1227
BveI ACCTGC 1 cut(s) 1480
Cac8I GCNNGC 2 cut(s) 1035, 1499
Cfr13I GGNCC 2 cut(s) 1041, 1324
Cfr9I CCCGGG 1 cut(s) 1321
CseI GACGC 3 cut(s) 61, 713, 768
Csp6I GTAC 2 cut(s) 323, 667
CviAII CATG 9 cut(s) 190, 211, 635, 811, 1038, 1069, 1246, 1278, 1294
CviQI GTAC 2 cut(s) 323, 667
DdeI CTNAG 1 cut(s) 1541
DpnI GATC 3 cut(s) 833, 1275, 1298
DpnII GATC 3 cut(s) 831, 1273, 1296
DraI TTTAAA 1 cut(s) 933
EaeI YGGCCR 1 cut(s) 919
Eam1104I CTCTTC 4 cut(s) 402, 720, 806, 1430
EarI CTCTTC 4 cut(s) 402, 720, 806, 1430
Eco130I CCWWGG 1 cut(s) 1277
Eco24I GRGCYC 1 cut(s) 560
Eco31I GGTCTC 1 cut(s) 1381
Eco57I CTGAAG 3 cut(s) 521, 744, 1560
Eco72I CACGTG 1 cut(s) 1214
Eco88I CYCGRG 1 cut(s) 1321
EcoRI GAATTC 1 cut(s) 1257
EcoRII CCWGG 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 1277
EcoT22I ATGCAT 1 cut(s) 876
EcoT38I GRGCYC 1 cut(s) 560
ErhI CCWWGG 1 cut(s) 1277
FaeI CATG 9 cut(s) 193, 214, 638, 814, 1041, 1072, 1249, 1281, 1297
FalI AAGNNNNNCTT 4 cut(s) 396, 428, 519, 551
FaqI GGGAC 2 cut(s) 1475, 1576
FatI CATG 9 cut(s) 189, 210, 634, 810, 1037, 1068, 1245, 1277, 1293
FauNDI CATATG 1 cut(s) 1334
Fnu4HI GCNGC 8 cut(s) 25, 36, 39, 42, 45, 378, 381, 1581
FriOI GRGCYC 1 cut(s) 560
Fsp4HI GCNGC 8 cut(s) 25, 36, 39, 42, 45, 378, 381, 1581
FspBI CTAG 1 cut(s) 1520
GluI GCNGC 8 cut(s) 25, 36, 39, 42, 45, 378, 381, 1581
GsuI CTGGAG 3 cut(s) 510, 1251, 1584
HaeIII GGCC 4 cut(s) 921, 1043, 1326, 1422
HapII CCGG 3 cut(s) 248, 1044, 1322
HgaI GACGC 3 cut(s) 61, 713, 768
Hin1II CATG 9 cut(s) 193, 214, 638, 814, 1041, 1072, 1249, 1281, 1297
HincII GTYRAC 3 cut(s) 160, 703, 1469
HindII GTYRAC 3 cut(s) 160, 703, 1469
HinfI GANTC 5 cut(s) 961, 1018, 1235, 1506, 1564
HpaII CCGG 3 cut(s) 248, 1044, 1322
HphI GGTGA 5 cut(s) 185, 443, 672, 1164, 1540
Hpy166II GTNNAC 5 cut(s) 18, 160, 703, 783, 1469
Hpy188I TCNGA 8 cut(s) 57, 77, 223, 648, 1273, 1349, 1505, 1544
Hpy188III TCNNGA 6 cut(s) 489, 737, 829, 835, 1378, 1601
Hpy8I GTNNAC 5 cut(s) 18, 160, 703, 783, 1469
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 3 cut(s) 38, 1337, 1584
HpyCH4III ACNGT 7 cut(s) 173, 201, 275, 346, 610, 1466, 1513
HpyCH4IV ACGT 5 cut(s) 325, 482, 885, 1213, 1587
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 44, 194, 359, 374, 755, 871
HpyF3I CTNAG 1 cut(s) 1541
HpySE526I ACGT 5 cut(s) 325, 482, 885, 1213, 1587
Hsp92II CATG 9 cut(s) 193, 214, 638, 814, 1041, 1072, 1249, 1281, 1297
Kzo9I GATC 3 cut(s) 831, 1273, 1296
LguI GCTCTTC 2 cut(s) 402, 806
LmnI GCTCC 9 cut(s) 77, 106, 125, 219, 284, 374, 532, 553, 1218
Lsp1109I GCAGC 3 cut(s) 364, 392, 1567
LweI GCATC 2 cut(s) 484, 896
MaeI CTAG 1 cut(s) 1520
MaeII ACGT 5 cut(s) 325, 482, 885, 1213, 1587
MaeIII GTNAC 5 cut(s) 94, 630, 637, 886, 1286
MalI GATC 3 cut(s) 833, 1275, 1298
MbiI CCGCTC 1 cut(s) 101
MboI GATC 3 cut(s) 831, 1273, 1296
MfeI CAATTG 1 cut(s) 561
MhlI GDGCHC 1 cut(s) 560
MlsI TGGCCA 1 cut(s) 921
MluCI AATT 9 cut(s) 108, 128, 151, 283, 393, 561, 674, 928, 1257
MluNI TGGCCA 1 cut(s) 921
MlyI GAGTC 1 cut(s) 1558
MmeI TCCRAC 2 cut(s) 55, 583
Mox20I TGGCCA 1 cut(s) 921
Mph1103I ATGCAT 1 cut(s) 876
MroXI GAANNNNTTC 1 cut(s) 1239
MscI TGGCCA 1 cut(s) 921
Msp20I TGGCCA 1 cut(s) 921
MspA1I CMGCKG 1 cut(s) 1580
MspI CCGG 3 cut(s) 248, 1044, 1322
MspR9I CCNGG 4 cut(s) 114, 1045, 1322, 1323
MunI CAATTG 1 cut(s) 561
Mva1269I GAATGC 1 cut(s) 876
MvaI CCWGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 7 cut(s) 41, 44, 194, 359, 374, 755, 871
NciI CCSGG 3 cut(s) 1045, 1322, 1323
NcoI CCATGG 1 cut(s) 1277
NdeI CATATG 1 cut(s) 1334
NdeII GATC 3 cut(s) 831, 1273, 1296
NlaIII CATG 9 cut(s) 193, 214, 638, 814, 1041, 1072, 1249, 1281, 1297
NlaIV GGNNCC 1 cut(s) 208
NmeAIII GCCGAG 1 cut(s) 1075
NmuCI GTSAC 1 cut(s) 630
NsiI ATGCAT 1 cut(s) 876
NspI RCATGY 1 cut(s) 638
NspV TTCGAA 1 cut(s) 695
PacI TTAATTAA 1 cut(s) 396
PciI ACATGT 1 cut(s) 634
PciSI GCTCTTC 2 cut(s) 402, 806
PctI GAATGC 1 cut(s) 876
PdmI GAANNNNTTC 1 cut(s) 1239
PfeI GAWTC 4 cut(s) 961, 1018, 1235, 1506
PflFI GACNNNGTC 1 cut(s) 1464
PflMI CCANNNNNTGG 1 cut(s) 1283
PkrI GCNGC 8 cut(s) 26, 37, 40, 43, 46, 379, 382, 1582
PleI GAGTC 1 cut(s) 1558
PmaCI CACGTG 1 cut(s) 1214
PmlI CACGTG 1 cut(s) 1214
PpsI GAGTC 1 cut(s) 1558
Ppu21I YACGTR 2 cut(s) 326, 1214
PscI ACATGT 1 cut(s) 634
PshBI ATTAAT 1 cut(s) 1077
Psp1406I AACGTT 1 cut(s) 885
Psp6I CCWGG 1 cut(s) 112
PspCI CACGTG 1 cut(s) 1214
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 2 cut(s) 1041, 1324
PstI CTGCAG 2 cut(s) 382, 1585
PsyI GACNNNGTC 1 cut(s) 1464
PvuII CAGCTG 1 cut(s) 1580
RsaI GTAC 2 cut(s) 324, 668
RsaNI GTAC 2 cut(s) 323, 667
SapI GCTCTTC 2 cut(s) 402, 806
SatI GCNGC 8 cut(s) 25, 36, 39, 42, 45, 378, 381, 1581
Sau3AI GATC 3 cut(s) 831, 1273, 1296
Sau96I GGNCC 2 cut(s) 1041, 1324
SchI GAGTC 1 cut(s) 1558
ScrFI CCNGG 4 cut(s) 114, 1045, 1322, 1323
SduI GDGCHC 1 cut(s) 560
SfaNI GCATC 2 cut(s) 484, 896
SfcI CTRYAG 3 cut(s) 309, 378, 1581
SfuI TTCGAA 1 cut(s) 695
SmaI CCCGGG 1 cut(s) 1323
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
Sse9I AATT 9 cut(s) 108, 128, 151, 283, 393, 561, 674, 928, 1257
SsiI CCGC 8 cut(s) 25, 35, 38, 41, 44, 99, 186, 1205
SspI AATATT 1 cut(s) 880
SspMI CTAG 1 cut(s) 1520
StyD4I CCNGG 4 cut(s) 112, 1043, 1320, 1321
StyI CCWWGG 1 cut(s) 1277
TaaI ACNGT 7 cut(s) 173, 201, 275, 346, 610, 1466, 1513
TaiI ACGT 5 cut(s) 328, 485, 888, 1216, 1590
TaqI TCGA 3 cut(s) 695, 959, 1379
TasI AATT 9 cut(s) 108, 128, 151, 283, 393, 561, 674, 928, 1257
TauI GCSGC 5 cut(s) 27, 38, 41, 44, 47
TfiI GAWTC 4 cut(s) 961, 1018, 1235, 1506
TscAI CASTG 2 cut(s) 582, 1234
TseFI GTSAC 1 cut(s) 630
TseI GCWGC 3 cut(s) 377, 380, 1580
Tsp45I GTSAC 1 cut(s) 630
TspDTI ATGAA 6 cut(s) 141, 687, 799, 1031, 1156, 1469
TspGWI ACGGA 3 cut(s) 177, 1383, 1428
TspMI CCCGGG 1 cut(s) 1321
TspRI CASTG 2 cut(s) 582, 1234
Tth111I GACNNNGTC 1 cut(s) 1464
Van91I CCANNNNNTGG 1 cut(s) 1283
VspI ATTAAT 1 cut(s) 1077
XapI RAATTY 4 cut(s) 108, 128, 928, 1257
XceI RCATGY 1 cut(s) 638
XmaI CCCGGG 1 cut(s) 1321
XmnI GAANNNNTTC 1 cut(s) 1239
XspI CTAG 1 cut(s) 1520
Zsp2I ATGCAT 1 cut(s) 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.