Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005706

Physical Location & Seq

Genomic Coordinates Forward (+)

29833083 .. 29837436

Gene Structure 4354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG149500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAGAACAGCAAAAGAAGATTCTGAGGACGAAACCATGGTTCTTAATGTGGCAGGTGCTGGTATCTGCTTGATGATAACAGTCTTGCAAATCGCTCAATTACCTAACATCAAGGTTGCTACAGTACTACTATGTTGTGCATTTATCTACGACATCTTTTGGGTATTCGTGTCACCCTTATTCTTTAAAGACAGCGTCATGATTGCGGTTGCTAGAGGTGACAAAGCTGGTGGTGAAGCCCTACCAATGCTTTTGAGAGTCCCTAAATTTTTTGACCCCTGGGGTGGTCAGAATATGATTGGCTTTGGGGACATTCTGTTTCCGGGTTTGCTTATTTTATTTACTTTCAGATTTGACAAAGAAAACAAGAAGAGTATGATCAATGGGTATTTTCTATGGTTGCTAATTGGCTATGGAATGGGGCTTTTTTTTACGTACTTGGGCTTGTACCTCATGAATGGCAATGGTCAGCCTGCACTCCTCTATCTTGTTCCATGCACACTAGGTGTTACAGTGATTTTGGGTTTGATAAGAGGTGAGCTGAAAGAACTTTGGAGTTATGGCACAGTGCTATATCCAACTCTGGGTGATTCTGGACAAGACAATAGATCAGTGAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

207

Amino Acids

22.99

Weight (kDa)

5.45

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_A22B	PF04258	21 - 188	1.6e-67	Signal peptide peptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05820 AT1G05820 AT1G05820 AT1G05820 AT2G43070 AT2G43070 AT2G43070 AT2G43070
fragaria_vesca	FvH4_4g11900 FvH4_4g11900 FvH4_4g11900 FvH4_4g11900
malus_domestica	MD04G1030600.v1.1 MD13G1278000.v1.1 MD15G1041300.v1.1
prunus_persica	Prupe.1G180000_v2.0.a1
pyrus_communis	pycom04g02590
rosa_chinensis	RchiOBHm_Chr4g0409391
rosa_laevigata	RLG00000008564
rosa_multiflora	Rmu_sc0001616.1_g000041
rosa_roxburghii	Rroxscaffold_5G00353920
rosa_rugosa	Rorug04G0093500
rosa_samantha	Rh4AG156000 Rh4BG155200 Rh4CG165300 Rh4DG149500
rosa_wichuraiana	Rw0G018710 Rw4G012770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	44
Acc36I	ACCTGC	1 cut(s)	44
AciI	CCGC	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	266
AdeI	CACNNNGTG	1 cut(s)	506
AfaI	GTAC	3 cut(s)	126, 437, 449
AfiI	CCNNNNNNNGG	2 cut(s)	284, 584
AjnI	CCWGG	1 cut(s)	278
AluBI	AGCT	2 cut(s)	227, 541
AluI	AGCT	2 cut(s)	227, 541
AlwNI	CAGNNNCTG	1 cut(s)	59
ApoI	RAATTY	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	324
AsuHPI	GGTGA	5 cut(s)	165, 230, 245, 548, 599
BciT130I	CCWGG	1 cut(s)	280
BclI	TGATCA	1 cut(s)	378
BcnI	CCSGG	1 cut(s)	324
BfaI	CTAG	2 cut(s)	213, 503
BfmI	CTRYAG	1 cut(s)	120
BfuAI	ACCTGC	1 cut(s)	44
BmcAI	AGTACT	1 cut(s)	126
Bme1390I	CCNGG	2 cut(s)	280, 324
BmrFI	CCNGG	2 cut(s)	280, 324
BpuMI	CCSGG	1 cut(s)	324
BsaAI	YACGTR	1 cut(s)	435
BsaJI	CCNNGG	3 cut(s)	36, 278, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 584
Bse3DI	GCAATG	1 cut(s)	469
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	3 cut(s)	36, 278, 279
BseLI	CCNNNNNNNGG	2 cut(s)	284, 584
BseMI	GCAATG	1 cut(s)	469
BseMII	CTCAG	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	470
BsgI	GTGCAG	1 cut(s)	459
BsiSI	CCGG	1 cut(s)	323
BslFI	GGGAC	2 cut(s)	245, 323
BslI	CCNNNNNNNGG	2 cut(s)	284, 584
BsmFI	GGGAC	2 cut(s)	245, 323
Bsp143I	GATC	2 cut(s)	378, 608
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	16
BspHI	TCATGA	2 cut(s)	198, 453
BspMI	ACCTGC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	469
BssECI	CCNNGG	3 cut(s)	36, 278, 279
BssMI	GATC	2 cut(s)	378, 608
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	4 cut(s)	82, 124, 514, 568
Bst6I	CTCTTC	1 cut(s)	365
BstBAI	YACGTR	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	1 cut(s)	24
BstDSI	CCRYGG	1 cut(s)	36
BstKTI	GATC	2 cut(s)	381, 611
BstMBI	GATC	2 cut(s)	378, 608
BstNI	CCWGG	1 cut(s)	280
BstSCI	CCNGG	2 cut(s)	278, 322
BstSFI	CTRYAG	1 cut(s)	120
BstSNI	TACGTA	1 cut(s)	435
BtgI	CCRYGG	1 cut(s)	36
BtsIMutI	CAGTG	3 cut(s)	519, 573, 618
BveI	ACCTGC	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	474
CaiI	CAGNNNCTG	1 cut(s)	59
CciI	TCATGA	2 cut(s)	198, 453
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	3 cut(s)	125, 436, 448
CspCI	CAANNNNNGTGG	2 cut(s)	211, 246
CviAII	CATG	4 cut(s)	37, 199, 454, 495
CviJI	RGCY	8 cut(s)	227, 239, 303, 411, 424, 444, 472, 541
CviKI_1	RGCY	8 cut(s)	227, 239, 303, 411, 424, 444, 472, 541
CviQI	GTAC	3 cut(s)	125, 436, 448
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	2 cut(s)	380, 610
DpnII	GATC	2 cut(s)	378, 608
DraI	TTTAAA	1 cut(s)	187
DraIII	CACNNNGTG	1 cut(s)	506
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
Eco105I	TACGTA	1 cut(s)	435
Eco130I	CCWWGG	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	4 cut(s)	40, 202, 457, 498
FaqI	GGGAC	2 cut(s)	245, 323
FatI	CATG	4 cut(s)	36, 198, 453, 494
FbaI	TGATCA	1 cut(s)	378
FspBI	CTAG	2 cut(s)	213, 503
HapII	CCGG	1 cut(s)	323
HgaI	GACGC	1 cut(s)	184
Hin1II	CATG	4 cut(s)	40, 202, 457, 498
HinfI	GANTC	3 cut(s)	20, 258, 590
HpaII	CCGG	1 cut(s)	323
HphI	GGTGA	5 cut(s)	165, 230, 245, 548, 599
Hpy188I	TCNGA	3 cut(s)	25, 291, 350
Hpy188III	TCNNGA	3 cut(s)	199, 454, 594
HpyCH4III	ACNGT	4 cut(s)	82, 124, 514, 568
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	4 cut(s)	88, 140, 476, 498
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	4 cut(s)	40, 202, 457, 498
Ksp22I	TGATCA	1 cut(s)	378
Kzo9I	GATC	2 cut(s)	378, 608
LpnPI	CCDG	9 cut(s)	39, 45, 213, 265, 292, 336, 486, 569, 579
MaeI	CTAG	2 cut(s)	213, 503
MaeII	ACGT	1 cut(s)	434
MaeIII	GTNAC	3 cut(s)	171, 218, 508
MalI	GATC	2 cut(s)	380, 610
MboI	GATC	2 cut(s)	378, 608
MboII	GAAGA	2 cut(s)	29, 382
MluCI	AATT	3 cut(s)	98, 266, 405
MlyI	GAGTC	1 cut(s)	267
MmeI	TCCRAC	1 cut(s)	602
MnlI	CCTC	5 cut(s)	19, 209, 461, 491, 527
MseI	TTAA	2 cut(s)	45, 186
MspI	CCGG	1 cut(s)	323
MspR9I	CCNGG	2 cut(s)	280, 324
MvaI	CCWGG	1 cut(s)	280
NciI	CCSGG	1 cut(s)	324
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	2 cut(s)	378, 608
NlaIII	CATG	4 cut(s)	40, 202, 457, 498
NmuCI	GTSAC	2 cut(s)	171, 218
PagI	TCATGA	2 cut(s)	198, 453
PaqCI	CACCTGC	1 cut(s)	44
PasI	CCCWGGG	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	20, 590
PflFI	GACNNNGTC	1 cut(s)	194
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Ppu21I	YACGTR	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PstNI	CAGNNNCTG	1 cut(s)	59
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	3 cut(s)	126, 437, 449
RsaNI	GTAC	3 cut(s)	125, 436, 448
SaqAI	TTAA	2 cut(s)	45, 186
Sau3AI	GATC	2 cut(s)	378, 608
ScaI	AGTACT	1 cut(s)	126
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	2 cut(s)	280, 324
SfcI	CTRYAG	1 cut(s)	120
SnaBI	TACGTA	1 cut(s)	435
Sse9I	AATT	3 cut(s)	98, 266, 405
SsiI	CCGC	1 cut(s)	206
SspMI	CTAG	2 cut(s)	213, 503
StyD4I	CCNGG	2 cut(s)	278, 322
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	4 cut(s)	82, 124, 514, 568
TaiI	ACGT	1 cut(s)	437
TasI	AATT	3 cut(s)	98, 266, 405
TatI	WGTACW	1 cut(s)	124
TfiI	GAWTC	2 cut(s)	20, 590
Tru1I	TTAA	2 cut(s)	45, 186
Tru9I	TTAA	2 cut(s)	45, 186
TscAI	CASTG	3 cut(s)	519, 573, 618
TseFI	GTSAC	2 cut(s)	171, 218
Tsp45I	GTSAC	2 cut(s)	171, 218
TspDTI	ATGAA	1 cut(s)	470
TspRI	CASTG	3 cut(s)	519, 573, 618
Tth111I	GACNNNGTC	1 cut(s)	194
XapI	RAATTY	1 cut(s)	266
XspI	CTAG	2 cut(s)	213, 503
ZrmI	AGTACT	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.