Rw0G018710

Signal peptide peptidase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00842
Physical Location & Seq
Reverse (-)
31972 .. 41091
9120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G018710.1

Sequence Viewer

Length: 1587 bp
ATGGCGCCGTCGTTGTCGTCGGTTTTTCTCCGTCTTCTGCTTCTGTTATCTCTCACTGCTCTATCGTTCGCCGACAATTCAAAAGACTACATCTTGGGCAAGGATTCCACCCCCAACAAACCCTCCTGCAGCAACCCTTACCTAATGGTGAAGGTTAAAAGGTGGGTTAATGGCAACGAAGGCAAAACTGTTGAGGGGGTTGGTGCAAAATTTGGGGCTTTGTTGCCTTCTAAACTTGAAAAAGCTGTCAAATTGCCTGTTGTTCTCTCCAAACCCTTCAATGGCTGCTCCAAATCCTCTTCTCAGTTATCTGGAGCTATTGCCTTGTCCACACGCGGTGATTGTGACTTCTCCGTTAAGGCACAAGTTGCACAAGCCGGAGGTGCTAAGGGGTTGTTGGTGATGAATGATAAAGAAGACCTTGCCATGATGGGCTGTCCTGCAAACGGCACTTTGGATGTTTCGATATTTGTTGCAATGATTCAAAAGTCAGACGGAGAACATCTCAAGAAATCTGTTGAGGATGGAAATAAAGTGGAGCTTCTATTATATTCTCCCAAGCGTCCGGTGGTGGACTTTGGAGTTGCGTTTTTATGGCTGATGGCTGTTGGAACGATAACAATGGCCTCATATTGGAAAACGATTACTGTTGTCGAGCAAAATGATGACCCTTACAAAGAACTAGCAGAAAAGGATTCTATGAGAACAGCGAAAGAAGATTCTGAGGACGAAACCATGGTTCTTAATGTGGCAGGTGCTGTGTGTTTTGTCATAACAGCATCCACTTTTCTGTTGCTACTATACTTTTTTATGTCTACGTGGTTTGTGTGGGTGCTGATCGTACTTTTCTGCATTGGCGGTATTCAGGGAATGCATAATGTCATCTCAAGCCTGATTTTGAGAACATGGAAAAGCGGTGAACGGAAGGGAATACATGTGCCTATTTTTGAAGAGGTCTCTTATCTCTCGCTTGTTATATTGCTCGTCTCTGTGGCATTTGCAATTTTCTGGTGTGTAACGCGGCAGGAATCATATTCCTGGATTGGCCAAGATGTTCTTGTAATTAATCTGTACATTTTTACAGGGTATCGCTTGATGATAACAGTCTTGCAAATCGCTCAATTACCTAACATCAAGGTTGCTACAGTACTACTATGTTGTGCATTTATCTACGACATCTTTTGGGTATTCAATATGATTGGCTTTGGGGACATTCTGTTTCCGGGTTTGCTTTTTATTTACTTTCAGGTATTATTTGACAAAGAAAACAAGAAGAGTATGATCAATGGGTATTTTCTATGGTTTGCTAATTGGCTATGGAATGGTGTCATTTTTGTTGAGTACTTGACTGCATTTTTTAAAACAATATTCCTCGTCTTGTTGGTGGCATTAATGGGGGCGGAATTTCCTGTTCCAGGGCTTTTTTTTACGTACTTGGGCTTGTACCTCATGAATGGCAATGGTCAGCCTGCACTCCTCTATCTTGTTCCATGCACACTAGGTGTTACAGTGATTTTGGGTTTTATAAGAGGTGAGCTGAAAGAACTTTGGAGTTATGGCAACAGTGCTATATCCAACTCTGGGTGA

Protein Analysis

528

Amino Acids

58.55

Weight (kDa)

6.83

Isoelectric Point (pI)

29.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PA PF02225 83 - 169 4.5e-14 PA domain
Peptidase_A22B PF04258 242 - 398 4e-32 Signal peptide peptidase
Peptidase_A22B PF04258 397 - 521 3.7e-21 Signal peptide peptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1526
AarI CACCTGC 1 cut(s) 743
Acc36I ACCTGC 1 cut(s) 743
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 815
AccII CGCG 2 cut(s) 336, 1021
AciI CCGC 5 cut(s) 336, 858, 915, 1021, 1400
AcoI YGGCCR 1 cut(s) 1045
AcsI RAATTY 2 cut(s) 209, 1403
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 2 cut(s) 338, 1502
AfaI GTAC 6 cut(s) 843, 1073, 1149, 1343, 1433, 1445
AfiI CCNNNNNNNGG 5 cut(s) 281, 446, 633, 1415, 1581
AflIII ACRYGT 1 cut(s) 934
AgsI TTSAA 6 cut(s) 81, 239, 280, 485, 950, 1192
AjnI CCWGG 2 cut(s) 1037, 1414
AluBI AGCT 4 cut(s) 245, 317, 541, 1537
AluI AGCT 4 cut(s) 245, 317, 541, 1537
Alw26I GTCTC 2 cut(s) 961, 991
AlwNI CAGNNNCTG 1 cut(s) 758
AoxI GGCC 2 cut(s) 624, 1045
ApeKI GCWGC 2 cut(s) 129, 285
ApoI RAATTY 2 cut(s) 209, 1403
AseI ATTAAT 2 cut(s) 1065, 1391
AspLEI GCGC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 1224
AsuHPI GGTGA 5 cut(s) 160, 350, 412, 929, 1544
BalI TGGCCA 1 cut(s) 1047
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 2 cut(s) 26, 423
BbvI GCAGC 2 cut(s) 141, 272
BccI CCATC 3 cut(s) 424, 518, 595
BceAI ACGGC 1 cut(s) 463
BciT130I CCWGG 2 cut(s) 1039, 1416
BclI TGATCA 1 cut(s) 1281
BcnI CCSGG 1 cut(s) 1224
BcoDI GTCTC 2 cut(s) 961, 991
BfaI CTAG 2 cut(s) 683, 1499
BfmI CTRYAG 2 cut(s) 127, 1143
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 743
BisI GCNGC 3 cut(s) 130, 286, 1022
BlsI GCNGC 3 cut(s) 131, 287, 1023
BmcAI AGTACT 2 cut(s) 1149, 1343
Bme1390I CCNGG 3 cut(s) 1039, 1224, 1416
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 3 cut(s) 1039, 1224, 1416
BmsI GCATC 1 cut(s) 788
BpiI GAAGAC 2 cut(s) 26, 423
BplI GAGNNNNNCTC 2 cut(s) 489, 521
BpmI CTGGAG 1 cut(s) 333
Bpu10I CCTNAGC 1 cut(s) 387
BpuEI CTTGAG 2 cut(s) 491, 871
BpuMI CCSGG 1 cut(s) 1224
BsaAI YACGTR 2 cut(s) 819, 1431
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 961
BsaJI CCNNGG 2 cut(s) 735, 1415
BsaWI WCCGGW 1 cut(s) 565
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 5 cut(s) 281, 446, 633, 1415, 1581
Bse3DI GCAATG 2 cut(s) 483, 1465
BseBI CCWGG 2 cut(s) 1039, 1416
BseDI CCNNGG 2 cut(s) 735, 1415
BseGI GGATG 3 cut(s) 463, 529, 779
BseLI CCNNNNNNNGG 5 cut(s) 281, 446, 633, 1415, 1581
BseMI GCAATG 2 cut(s) 483, 1465
BseMII CTCAG 2 cut(s) 317, 714
BseRI GAGGAG 1 cut(s) 1466
BseXI GCAGC 2 cut(s) 141, 272
BsgI GTGCAG 1 cut(s) 1455
Bsh1236I CGCG 2 cut(s) 336, 1021
BshFI GGCC 2 cut(s) 626, 1047
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 3 cut(s) 378, 566, 1223
BslFI GGGAC 1 cut(s) 1223
BslI CCNNNNNNNGG 5 cut(s) 281, 446, 633, 1415, 1581
BsmAI GTCTC 2 cut(s) 961, 991
BsmBI CGTCTC 1 cut(s) 991
BsmFI GGGAC 1 cut(s) 1223
BsmI GAATGC 1 cut(s) 876
BsnI GGCC 2 cut(s) 626, 1047
Bso31I GGTCTC 1 cut(s) 961
Bsp1407I TGTACA 1 cut(s) 1071
Bsp143I GATC 2 cut(s) 837, 1281
Bsp19I CCATGG 1 cut(s) 735
BspACI CCGC 5 cut(s) 336, 858, 915, 1021, 1400
BspANI GGCC 2 cut(s) 626, 1047
BspCNI CTCAG 2 cut(s) 316, 715
BspFNI CGCG 2 cut(s) 336, 1021
BspHI TCATGA 1 cut(s) 1449
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 131
BspMI ACCTGC 1 cut(s) 743
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 961
BsrDI GCAATG 2 cut(s) 483, 1465
BsrGI TGTACA 1 cut(s) 1071
BssECI CCNNGG 2 cut(s) 735, 1415
BssMI GATC 2 cut(s) 837, 1281
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 735
Bst2UI CCWGG 2 cut(s) 1039, 1416
Bst4CI ACNGT 6 cut(s) 190, 649, 1105, 1147, 1510, 1565
Bst6I CTCTTC 3 cut(s) 304, 945, 1268
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 368
BstAUI TGTACA 1 cut(s) 1071
BstBAI YACGTR 2 cut(s) 819, 1431
BstC8I GCNNGC 1 cut(s) 1470
BstDEI CTNAG 3 cut(s) 303, 387, 723
BstDSI CCRYGG 1 cut(s) 735
BstENI CCTNNNNNAGG 1 cut(s) 1413
BstF5I GGATG 3 cut(s) 463, 529, 779
BstFNI CGCG 2 cut(s) 336, 1021
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 840, 1284
BstMAI GTCTC 2 cut(s) 961, 991
BstMBI GATC 2 cut(s) 837, 1281
BstMWI GCNNNNNNNGC 3 cut(s) 180, 368, 383
BstNI CCWGG 2 cut(s) 1039, 1416
BstNSI RCATGY 1 cut(s) 938
BstSCI CCNGG 3 cut(s) 1037, 1222, 1414
BstSFI CTRYAG 2 cut(s) 127, 1143
BstSNI TACGTA 1 cut(s) 1431
BstUI CGCG 2 cut(s) 336, 1021
BstV1I GCAGC 2 cut(s) 141, 272
BstV2I GAAGAC 2 cut(s) 26, 423
BsuRI GGCC 2 cut(s) 626, 1047
BtgI CCRYGG 1 cut(s) 735
BtsCI GGATG 3 cut(s) 463, 529, 779
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 3 cut(s) 54, 1515, 1570
BveI ACCTGC 1 cut(s) 743
Cac8I GCNNGC 1 cut(s) 1470
CaiI CAGNNNCTG 1 cut(s) 758
CciI TCATGA 1 cut(s) 1449
CfoI GCGC 1 cut(s) 7
CseI GACGC 1 cut(s) 551
Csp6I GTAC 6 cut(s) 842, 1072, 1148, 1342, 1432, 1444
CviAII CATG 6 cut(s) 427, 736, 906, 935, 1450, 1491
CviQI GTAC 6 cut(s) 842, 1072, 1148, 1342, 1432, 1444
DdeI CTNAG 3 cut(s) 303, 387, 723
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 839, 1283
DpnII GATC 2 cut(s) 837, 1281
DraI TTTAAA 1 cut(s) 1360
DraIII CACNNNGTG 2 cut(s) 338, 1502
EaeI YGGCCR 1 cut(s) 1045
Eam1104I CTCTTC 3 cut(s) 304, 945, 1268
EarI CTCTTC 3 cut(s) 304, 945, 1268
EciI GGCGGA 1 cut(s) 1415
Eco105I TACGTA 1 cut(s) 1431
Eco130I CCWWGG 1 cut(s) 735
Eco31I GGTCTC 1 cut(s) 961
EcoNI CCTNNNNNAGG 1 cut(s) 1413
EcoRII CCWGG 2 cut(s) 1037, 1414
EcoT14I CCWWGG 1 cut(s) 735
EcoT22I ATGCAT 1 cut(s) 876
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 735
Esp3I CGTCTC 1 cut(s) 991
FaeI CATG 6 cut(s) 430, 739, 909, 938, 1453, 1494
FalI AAGNNNNNCTT 6 cut(s) 405, 437, 525, 557, 1041, 1073
FaqI GGGAC 1 cut(s) 1223
FatI CATG 6 cut(s) 426, 735, 905, 934, 1449, 1490
FbaI TGATCA 1 cut(s) 1281
FblI GTMKAC 1 cut(s) 815
Fnu4HI GCNGC 3 cut(s) 130, 286, 1022
FokI GGATG 3 cut(s) 470, 536, 766
Fsp4HI GCNGC 3 cut(s) 130, 286, 1022
FspBI CTAG 2 cut(s) 683, 1499
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 130, 286, 1022
GsuI CTGGAG 1 cut(s) 333
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 626, 1047
HapII CCGG 3 cut(s) 378, 566, 1223
HgaI GACGC 1 cut(s) 551
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 430, 739, 909, 938, 1453, 1494
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 5 cut(s) 104, 481, 695, 719, 1028
HpaII CCGG 3 cut(s) 378, 566, 1223
HphI GGTGA 5 cut(s) 160, 350, 412, 929, 1544
Hpy166II GTNNAC 4 cut(s) 330, 574, 816, 920
Hpy188I TCNGA 2 cut(s) 493, 724
Hpy188III TCNNGA 3 cut(s) 312, 508, 1450
Hpy8I GTNNAC 4 cut(s) 330, 574, 816, 920
Hpy99I CGWCG 2 cut(s) 13, 22
HpyAV CCTTC 5 cut(s) 145, 173, 237, 286, 919
HpyCH4III ACNGT 6 cut(s) 190, 649, 1105, 1147, 1510, 1565
HpyCH4IV ACGT 2 cut(s) 818, 1430
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 368, 383
HpyF3I CTNAG 3 cut(s) 303, 387, 723
HpySE526I ACGT 2 cut(s) 818, 1430
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 430, 739, 909, 938, 1453, 1494
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 1281
Kzo9I GATC 2 cut(s) 837, 1281
LmnI GCTCC 3 cut(s) 293, 314, 538
Lsp1109I GCAGC 2 cut(s) 141, 272
LweI GCATC 1 cut(s) 788
MaeI CTAG 2 cut(s) 683, 1499
MaeII ACGT 2 cut(s) 818, 1430
MaeIII GTNAC 3 cut(s) 344, 1015, 1504
MalI GATC 2 cut(s) 839, 1283
MboI GATC 2 cut(s) 837, 1281
MboII GAAGA 6 cut(s) 26, 291, 428, 728, 962, 1285
MlsI TGGCCA 1 cut(s) 1047
MluCI AATT 8 cut(s) 76, 209, 251, 1002, 1062, 1121, 1309, 1403
MluNI TGGCCA 1 cut(s) 1047
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 589
Mox20I TGGCCA 1 cut(s) 1047
Mph1103I ATGCAT 1 cut(s) 876
MscI TGGCCA 1 cut(s) 1047
MseI TTAA 7 cut(s) 156, 168, 357, 744, 1065, 1359, 1391
Msp20I TGGCCA 1 cut(s) 1047
MspI CCGG 3 cut(s) 378, 566, 1223
MspR9I CCNGG 3 cut(s) 1039, 1224, 1416
Mva1269I GAATGC 1 cut(s) 876
MvaI CCWGG 2 cut(s) 1039, 1416
MvnI CGCG 2 cut(s) 336, 1021
MwoI GCNNNNNNNGC 3 cut(s) 180, 368, 383
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 1224
NcoI CCATGG 1 cut(s) 735
NdeII GATC 2 cut(s) 837, 1281
NlaIII CATG 6 cut(s) 430, 739, 909, 938, 1453, 1494
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 344
NsiI ATGCAT 1 cut(s) 876
NspI RCATGY 1 cut(s) 938
PagI TCATGA 1 cut(s) 1449
PaqCI CACCTGC 1 cut(s) 743
PciI ACATGT 1 cut(s) 934
PctI GAATGC 1 cut(s) 876
PfeI GAWTC 5 cut(s) 104, 481, 695, 719, 1028
PfoI TCCNGGA 1 cut(s) 1037
PkrI GCNGC 3 cut(s) 131, 287, 1023
PluTI GGCGCC 1 cut(s) 8
Ppu21I YACGTR 2 cut(s) 819, 1431
PscI ACATGT 1 cut(s) 934
PshBI ATTAAT 2 cut(s) 1065, 1391
PsiI TTATAA 1 cut(s) 1526
Psp6I CCWGG 2 cut(s) 1037, 1414
PspGI CCWGG 2 cut(s) 1037, 1414
PspN4I GGNNCC 1 cut(s) 6
PstI CTGCAG 1 cut(s) 131
PstNI CAGNNNCTG 1 cut(s) 758
RsaI GTAC 6 cut(s) 843, 1073, 1149, 1343, 1433, 1445
RsaNI GTAC 6 cut(s) 842, 1072, 1148, 1342, 1432, 1444
SaqAI TTAA 7 cut(s) 156, 168, 357, 744, 1065, 1359, 1391
SatI GCNGC 3 cut(s) 130, 286, 1022
Sau3AI GATC 2 cut(s) 837, 1281
ScaI AGTACT 2 cut(s) 1149, 1343
ScrFI CCNGG 3 cut(s) 1039, 1224, 1416
SfaNI GCATC 1 cut(s) 788
SfcI CTRYAG 2 cut(s) 127, 1143
SfoI GGCGCC 1 cut(s) 6
SmlI CTYRAG 2 cut(s) 506, 886
SmoI CTYRAG 2 cut(s) 506, 886
SnaBI TACGTA 1 cut(s) 1431
Sse9I AATT 8 cut(s) 76, 209, 251, 1002, 1062, 1121, 1309, 1403
SsiI CCGC 5 cut(s) 336, 858, 915, 1021, 1400
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 1368
SspMI CTAG 2 cut(s) 683, 1499
StyD4I CCNGG 3 cut(s) 1037, 1222, 1414
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 6 cut(s) 190, 649, 1105, 1147, 1510, 1565
TaiI ACGT 2 cut(s) 821, 1433
TaqI TCGA 2 cut(s) 464, 654
TasI AATT 8 cut(s) 76, 209, 251, 1002, 1062, 1121, 1309, 1403
TatI WGTACW 3 cut(s) 1071, 1147, 1341
TauI GCSGC 1 cut(s) 1024
TfiI GAWTC 5 cut(s) 104, 481, 695, 719, 1028
Tru1I TTAA 7 cut(s) 156, 168, 357, 744, 1065, 1359, 1391
Tru9I TTAA 7 cut(s) 156, 168, 357, 744, 1065, 1359, 1391
TscAI CASTG 3 cut(s) 61, 1515, 1570
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 2 cut(s) 129, 285
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 2 cut(s) 419, 1466
TspGWI ACGGA 4 cut(s) 20, 343, 510, 937
TspRI CASTG 3 cut(s) 61, 1515, 1570
VspI ATTAAT 2 cut(s) 1065, 1391
XagI CCTNNNNNAGG 1 cut(s) 1413
XapI RAATTY 2 cut(s) 209, 1403
XceI RCATGY 1 cut(s) 938
XcmI CCANNNNNNNNNTGG 1 cut(s) 565
XmiI GTMKAC 1 cut(s) 815
XspI CTAG 2 cut(s) 683, 1499
ZrmI AGTACT 2 cut(s) 1149, 1343
Zsp2I ATGCAT 1 cut(s) 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.