Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0005706

Physical Location & Seq

Genomic Coordinates Forward (+)

39680923 .. 39690480

Gene Structure 9558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG156000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGGCGTCGTCGTCGTCGTCGGTTTTTCTCCGTCTTCTGCTTCTGTTATCTCTCACTGCTCTATCGTTCGCCGACAATTCAAAAGACTACATCTTGGGCAAGGATTCCACCCCCAACAAACCCTCCTGCAACAACCCTTACCTAATGGTGAAGGTTAAAAGGTGGGTTAATGGCGACCAAGGCAAAACTGTTGAGGGGGTTGGTGCAAAATTTGGGGCTTTGTTGCCTTCTAAACTTGAAAAAGCTGTCAAATTTCCTGTTGTTCTCTCCAAACCCTTCAATGGCTGCTCCAAATCCTCTTCTCAGTTATCTGGAGCTATTGCCTTGTCCACACGCGGTGATTGTGACTTCTCCGTTAAGGCACAAGTTGCACAAGCCGGAGGTGCTAAGGGGTTGTTGGTGATGAATAATGAAGAAGACCTTGCCATGATGGGCTGTCCTGCAAACGGCACTTTGGATGTTTCAATATTTGTTGCAATGATTCAAAAGTCAGACGGAGAACATCTCAAGAAATCTGTTGAAGATGGAAATAAAGTGGAGCTTCTATTATATTCTCCCAAGCGTCCGGTGGTGGACTTTGGAGTTGCGTTTTTATGGCTGATGGCTGTTGGAACGATAAAAGTGGCCTCATATTGGAAAACGTTTACTGTTGTCGAGCAAAATGATGACCCTTACAAAGAACTAGCAGAAAAGGATTCTATGAGAACAGCGAAAGAAGATTCTGAGGACGAAACCATGGTTCTTAATGTGGCAGGTGCTGTGTGTTTTGTCATAACAGCATCCACTTTTCTGTTGCTACTATACTTTTTTATGTCTACGTGGTTTGTGTGGGTGCTGATCGTACTTTTCTGCATTGGCGGTATTCAGGGAATGCATAATGTTATCTCAAGCCTGATTTTGAGATCATGGAAAAGCGGTGGACGGAAGGGAATACATGTGCCTATTTTTGAAGAGGTCTCTTATCTCTCGCTTGTTATATTGCTCATCTCTGTGGCATTTGCAATTTTCTGGTGTGTAACGCGGCGGGAATCATATTCCTGGGTTGGCCAAGATGTTCTTGGTATCTGCTTGATGATAACAGTCTTGCAAATCGCTCAATTACCTAACATCAAGGTTGCTACAGTACTACTATGTTGTGCATTTCTCTACGACATCTTTTGGGTATTCGTGTCACCCTTATTCTTTAAAGACAGCGTCATGATTGCGGTTGCTAGAGGTGACAATGCTGGTGGTGAAGCCCTACCAATGCTTTTGAGAATCCCTAAATTTTTTGACCCCTGGGGTGGTCAGAATATGATTGGCTTTGGGGACATTCTTTTTCCGGGTTTGCTTATTTTATTTACTTTCAGGTATTGTTTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

454

Amino Acids

49.92

Weight (kDa)

7.91

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PA	PF02225	83 - 169	1.8e-14	PA domain
Peptidase_A22B	PF04258	242 - 451	2.2e-63	Signal peptide peptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05820 AT1G05820 AT1G05820 AT1G05820 AT2G43070 AT2G43070 AT2G43070 AT2G43070
fragaria_vesca	FvH4_4g11900 FvH4_4g11900 FvH4_4g11900 FvH4_4g11900
malus_domestica	MD04G1030600.v1.1 MD13G1278000.v1.1 MD15G1041300.v1.1
prunus_persica	Prupe.1G180000_v2.0.a1
pyrus_communis	pycom04g02590
rosa_chinensis	RchiOBHm_Chr4g0409391
rosa_laevigata	RLG00000008564
rosa_multiflora	Rmu_sc0001616.1_g000041
rosa_roxburghii	Rroxscaffold_5G00353920
rosa_rugosa	Rorug04G0093500
rosa_samantha	Rh4AG156000 Rh4BG155200 Rh4CG165300 Rh4DG149500
rosa_wichuraiana	Rw0G018710 Rw4G012770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	743
Acc36I	ACCTGC	1 cut(s)	743
AccI	GTMKAC	1 cut(s)	815
AccII	CGCG	2 cut(s)	336, 1021
AciI	CCGC	6 cut(s)	336, 858, 915, 1021, 1024, 1205
AclI	AACGTT	1 cut(s)	641
AcoI	YGGCCR	1 cut(s)	1045
AcsI	RAATTY	3 cut(s)	209, 251, 1265
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	338
AfaI	GTAC	2 cut(s)	843, 1125
AfiI	CCNNNNNNNGG	4 cut(s)	281, 446, 633, 1283
AflIII	ACRYGT	1 cut(s)	934
AgsI	TTSAA	7 cut(s)	81, 239, 280, 465, 485, 521, 950
AjnI	CCWGG	2 cut(s)	1037, 1277
AluBI	AGCT	3 cut(s)	245, 317, 541
AluI	AGCT	3 cut(s)	245, 317, 541
Alw26I	GTCTC	1 cut(s)	961
AlwNI	CAGNNNCTG	1 cut(s)	758
AoxI	GGCC	2 cut(s)	624, 1045
ApeKI	GCWGC	1 cut(s)	285
ApoI	RAATTY	3 cut(s)	209, 251, 1265
AsuC2I	CCSGG	1 cut(s)	1323
AsuHPI	GGTGA	6 cut(s)	160, 350, 412, 1164, 1229, 1244
BalI	TGGCCA	1 cut(s)	1047
BbsI	GAAGAC	2 cut(s)	26, 423
BbvI	GCAGC	1 cut(s)	272
BccI	CCATC	3 cut(s)	424, 518, 595
BceAI	ACGGC	1 cut(s)	463
BciT130I	CCWGG	2 cut(s)	1039, 1279
BcnI	CCSGG	1 cut(s)	1323
BcoDI	GTCTC	1 cut(s)	961
BfaI	CTAG	2 cut(s)	683, 1212
BfmI	CTRYAG	1 cut(s)	1119
BfuAI	ACCTGC	1 cut(s)	743
BisI	GCNGC	2 cut(s)	286, 1022
BlsI	GCNGC	2 cut(s)	287, 1023
BmcAI	AGTACT	1 cut(s)	1125
Bme1390I	CCNGG	3 cut(s)	1039, 1279, 1323
BmrFI	CCNGG	3 cut(s)	1039, 1279, 1323
BmsI	GCATC	1 cut(s)	788
BpiI	GAAGAC	2 cut(s)	26, 423
BplI	GAGNNNNNCTC	2 cut(s)	489, 521
BpmI	CTGGAG	1 cut(s)	333
Bpu10I	CCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	2 cut(s)	491, 871
BpuMI	CCSGG	1 cut(s)	1323
BsaAI	YACGTR	1 cut(s)	819
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	961
BsaJI	CCNNGG	5 cut(s)	178, 735, 1038, 1277, 1278
BsaWI	WCCGGW	1 cut(s)	565
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	4 cut(s)	281, 446, 633, 1283
Bse3DI	GCAATG	1 cut(s)	483
BseBI	CCWGG	2 cut(s)	1039, 1279
BseDI	CCNNGG	5 cut(s)	178, 735, 1038, 1277, 1278
BseGI	GGATG	2 cut(s)	463, 779
BseLI	CCNNNNNNNGG	4 cut(s)	281, 446, 633, 1283
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	2 cut(s)	317, 714
BseXI	GCAGC	1 cut(s)	272
Bsh1236I	CGCG	2 cut(s)	336, 1021
BshFI	GGCC	2 cut(s)	626, 1047
BsiSI	CCGG	3 cut(s)	378, 566, 1322
BslFI	GGGAC	1 cut(s)	1322
BslI	CCNNNNNNNGG	4 cut(s)	281, 446, 633, 1283
BsmAI	GTCTC	1 cut(s)	961
BsmFI	GGGAC	1 cut(s)	1322
BsmI	GAATGC	1 cut(s)	876
BsnI	GGCC	2 cut(s)	626, 1047
Bso31I	GGTCTC	1 cut(s)	961
Bsp143I	GATC	2 cut(s)	837, 902
Bsp19I	CCATGG	1 cut(s)	735
BspACI	CCGC	6 cut(s)	336, 858, 915, 1021, 1024, 1205
BspANI	GGCC	2 cut(s)	626, 1047
BspCNI	CTCAG	2 cut(s)	316, 715
BspFNI	CGCG	2 cut(s)	336, 1021
BspHI	TCATGA	1 cut(s)	1197
BspMI	ACCTGC	1 cut(s)	743
BspTNI	GGTCTC	1 cut(s)	961
BsrDI	GCAATG	1 cut(s)	483
BssECI	CCNNGG	5 cut(s)	178, 735, 1038, 1277, 1278
BssMI	GATC	2 cut(s)	837, 902
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	178, 735
Bst2UI	CCWGG	2 cut(s)	1039, 1279
Bst4CI	ACNGT	4 cut(s)	190, 649, 1081, 1123
Bst6I	CTCTTC	2 cut(s)	304, 945
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstBAI	YACGTR	1 cut(s)	819
BstDEI	CTNAG	3 cut(s)	303, 387, 723
BstDSI	CCRYGG	1 cut(s)	735
BstF5I	GGATG	2 cut(s)	463, 779
BstFNI	CGCG	2 cut(s)	336, 1021
BstKTI	GATC	2 cut(s)	840, 905
BstMAI	GTCTC	1 cut(s)	961
BstMBI	GATC	2 cut(s)	837, 902
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 368, 383
BstNI	CCWGG	2 cut(s)	1039, 1279
BstNSI	RCATGY	1 cut(s)	938
BstSCI	CCNGG	3 cut(s)	1037, 1277, 1321
BstSFI	CTRYAG	1 cut(s)	1119
BstUI	CGCG	2 cut(s)	336, 1021
BstV1I	GCAGC	1 cut(s)	272
BstV2I	GAAGAC	2 cut(s)	26, 423
BsuRI	GGCC	2 cut(s)	626, 1047
BtgI	CCRYGG	1 cut(s)	735
BtsCI	GGATG	2 cut(s)	463, 779
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
BveI	ACCTGC	1 cut(s)	743
CaiI	CAGNNNCTG	1 cut(s)	758
CciI	TCATGA	1 cut(s)	1197
CseI	GACGC	2 cut(s)	551, 1183
Csp6I	GTAC	2 cut(s)	842, 1124
CspCI	CAANNNNNGTGG	2 cut(s)	1210, 1245
CviAII	CATG	5 cut(s)	427, 736, 906, 935, 1198
CviQI	GTAC	2 cut(s)	842, 1124
DdeI	CTNAG	3 cut(s)	303, 387, 723
DpnI	GATC	2 cut(s)	839, 904
DpnII	GATC	2 cut(s)	837, 902
DraI	TTTAAA	1 cut(s)	1186
DraIII	CACNNNGTG	1 cut(s)	338
EaeI	YGGCCR	1 cut(s)	1045
Eam1104I	CTCTTC	2 cut(s)	304, 945
EarI	CTCTTC	2 cut(s)	304, 945
Eco130I	CCWWGG	2 cut(s)	178, 735
Eco31I	GGTCTC	1 cut(s)	961
EcoRII	CCWGG	2 cut(s)	1037, 1277
EcoT14I	CCWWGG	2 cut(s)	178, 735
EcoT22I	ATGCAT	1 cut(s)	876
ErhI	CCWWGG	2 cut(s)	178, 735
FaeI	CATG	5 cut(s)	430, 739, 909, 938, 1201
FalI	AAGNNNNNCTT	6 cut(s)	405, 437, 525, 557, 1041, 1073
FaqI	GGGAC	1 cut(s)	1322
FatI	CATG	5 cut(s)	426, 735, 905, 934, 1197
FauI	CCCGC	1 cut(s)	1017
FblI	GTMKAC	1 cut(s)	815
Fnu4HI	GCNGC	2 cut(s)	286, 1022
FokI	GGATG	2 cut(s)	470, 766
Fsp4HI	GCNGC	2 cut(s)	286, 1022
FspBI	CTAG	2 cut(s)	683, 1212
GluI	GCNGC	2 cut(s)	286, 1022
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	626, 1047
HapII	CCGG	3 cut(s)	378, 566, 1322
HgaI	GACGC	2 cut(s)	551, 1183
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	430, 739, 909, 938, 1201
HinfI	GANTC	6 cut(s)	104, 481, 695, 719, 1028, 1257
HpaII	CCGG	3 cut(s)	378, 566, 1322
HphI	GGTGA	6 cut(s)	160, 350, 412, 1164, 1229, 1244
Hpy166II	GTNNAC	5 cut(s)	330, 574, 645, 816, 920
Hpy188I	TCNGA	3 cut(s)	493, 724, 1290
Hpy188III	TCNNGA	3 cut(s)	312, 508, 1198
Hpy8I	GTNNAC	5 cut(s)	330, 574, 645, 816, 920
Hpy99I	CGWCG	5 cut(s)	10, 13, 16, 19, 22
HpyAV	CCTTC	4 cut(s)	145, 237, 286, 919
HpyCH4III	ACNGT	4 cut(s)	190, 649, 1081, 1123
HpyCH4IV	ACGT	2 cut(s)	641, 818
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 368, 383
HpyF3I	CTNAG	3 cut(s)	303, 387, 723
HpySE526I	ACGT	2 cut(s)	641, 818
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	430, 739, 909, 938, 1201
Kzo9I	GATC	2 cut(s)	837, 902
LmnI	GCTCC	3 cut(s)	293, 314, 538
Lsp1109I	GCAGC	1 cut(s)	272
LweI	GCATC	1 cut(s)	788
MaeI	CTAG	2 cut(s)	683, 1212
MaeII	ACGT	2 cut(s)	641, 818
MaeIII	GTNAC	4 cut(s)	344, 1015, 1170, 1217
MalI	GATC	2 cut(s)	839, 904
MboI	GATC	2 cut(s)	837, 902
MboII	GAAGA	7 cut(s)	26, 291, 425, 428, 533, 728, 962
MlsI	TGGCCA	1 cut(s)	1047
MluCI	AATT	6 cut(s)	76, 209, 251, 1002, 1097, 1265
MluNI	TGGCCA	1 cut(s)	1047
MmeI	TCCRAC	1 cut(s)	589
MnlI	CCTC	8 cut(s)	133, 187, 307, 374, 637, 718, 946, 1208
Mox20I	TGGCCA	1 cut(s)	1047
Mph1103I	ATGCAT	1 cut(s)	876
MscI	TGGCCA	1 cut(s)	1047
MseI	TTAA	5 cut(s)	156, 168, 357, 744, 1185
MslI	CAYNNNNRTG	1 cut(s)	989
Msp20I	TGGCCA	1 cut(s)	1047
MspI	CCGG	3 cut(s)	378, 566, 1322
MspR9I	CCNGG	3 cut(s)	1039, 1279, 1323
Mva1269I	GAATGC	1 cut(s)	876
MvaI	CCWGG	2 cut(s)	1039, 1279
MvnI	CGCG	2 cut(s)	336, 1021
MwoI	GCNNNNNNNGC	3 cut(s)	180, 368, 383
NciI	CCSGG	1 cut(s)	1323
NcoI	CCATGG	1 cut(s)	735
NdeII	GATC	2 cut(s)	837, 902
NlaIII	CATG	5 cut(s)	430, 739, 909, 938, 1201
NmuCI	GTSAC	3 cut(s)	344, 1170, 1217
NsiI	ATGCAT	1 cut(s)	876
NspI	RCATGY	1 cut(s)	938
PagI	TCATGA	1 cut(s)	1197
PaqCI	CACCTGC	1 cut(s)	743
PasI	CCCWGGG	1 cut(s)	1278
PciI	ACATGT	1 cut(s)	934
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PctI	GAATGC	1 cut(s)	876
PfeI	GAWTC	6 cut(s)	104, 481, 695, 719, 1028, 1257
PflFI	GACNNNGTC	1 cut(s)	1193
PkrI	GCNGC	2 cut(s)	287, 1023
Ppu21I	YACGTR	1 cut(s)	819
PscI	ACATGT	1 cut(s)	934
Psp1406I	AACGTT	1 cut(s)	641
Psp6I	CCWGG	2 cut(s)	1037, 1277
PspGI	CCWGG	2 cut(s)	1037, 1277
PstNI	CAGNNNCTG	1 cut(s)	758
PsyI	GACNNNGTC	1 cut(s)	1193
RsaI	GTAC	2 cut(s)	843, 1125
RsaNI	GTAC	2 cut(s)	842, 1124
RseI	CAYNNNNRTG	1 cut(s)	989
SaqAI	TTAA	5 cut(s)	156, 168, 357, 744, 1185
SatI	GCNGC	2 cut(s)	286, 1022
Sau3AI	GATC	2 cut(s)	837, 902
ScaI	AGTACT	1 cut(s)	1125
ScrFI	CCNGG	3 cut(s)	1039, 1279, 1323
SfaNI	GCATC	1 cut(s)	788
SfcI	CTRYAG	1 cut(s)	1119
SmiMI	CAYNNNNRTG	1 cut(s)	989
SmlI	CTYRAG	2 cut(s)	506, 886
SmoI	CTYRAG	2 cut(s)	506, 886
Sse9I	AATT	6 cut(s)	76, 209, 251, 1002, 1097, 1265
SsiI	CCGC	6 cut(s)	336, 858, 915, 1021, 1024, 1205
SspI	AATATT	1 cut(s)	468
SspMI	CTAG	2 cut(s)	683, 1212
StyD4I	CCNGG	3 cut(s)	1037, 1277, 1321
StyI	CCWWGG	2 cut(s)	178, 735
TaaI	ACNGT	4 cut(s)	190, 649, 1081, 1123
TaiI	ACGT	2 cut(s)	644, 821
TaqI	TCGA	1 cut(s)	654
TasI	AATT	6 cut(s)	76, 209, 251, 1002, 1097, 1265
TatI	WGTACW	1 cut(s)	1123
TauI	GCSGC	1 cut(s)	1024
TfiI	GAWTC	6 cut(s)	104, 481, 695, 719, 1028, 1257
Tru1I	TTAA	5 cut(s)	156, 168, 357, 744, 1185
Tru9I	TTAA	5 cut(s)	156, 168, 357, 744, 1185
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	3 cut(s)	344, 1170, 1217
TseI	GCWGC	1 cut(s)	285
Tsp45I	GTSAC	3 cut(s)	344, 1170, 1217
TspDTI	ATGAA	2 cut(s)	419, 426
TspGWI	ACGGA	4 cut(s)	20, 343, 510, 937
TspRI	CASTG	1 cut(s)	61
Tth111I	GACNNNGTC	1 cut(s)	1193
XapI	RAATTY	3 cut(s)	209, 251, 1265
XceI	RCATGY	1 cut(s)	938
XcmI	CCANNNNNNNNNTGG	2 cut(s)	565, 1055
XmiI	GTMKAC	1 cut(s)	815
XspI	CTAG	2 cut(s)	683, 1212
ZrmI	AGTACT	1 cut(s)	1125
Zsp2I	ATGCAT	1 cut(s)	876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.