FvH4_4g11900

Signal peptide peptidase-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
15631215 .. 15644201
12987 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11900.t3

Sequence Viewer

Length: 1623 bp
ATGGCGTCGTTGTCGTCGTCGGTTCTTCTCCGTATTCTGCTCCTCTTATCGCTGATTGCTCTATCCTTGGCCGCCGCTACAAAGGACTACCTCCTCAGCGAGGATAAGGGCAAGTCTCCCTCCTGCCAAAACCCTAACCTCATGCTCAAGGTTAAAATATGGGTTAATGGCAAAGAAGGCGAAACTGTTGAGGGAGTTGGTGCACAATTCGGGGCTTTGTTTCCTTCTCAAGTCGAAAAGGCAGTCAAATGGCCTGTTGTTGTCACCAAACCCTTGACTTCCTGCAACAAATCCTCTTCACAGTTATCTGGAGCTATTGCATTGTCCACACGTGGTGATTGTGACTTCACCGTTAAGGCACAAGTTGCACAAGCCGGAGGTGCTAAGGCGCTGTTGGTGATAAATAATGAAACAGCGCTTTCCATGATGGGCTGTCCTGACAATCGCACTTTTGATCTTTCAATATTTGCTGCGATGATTGAAAAGTCGGATGGAGAATATCTCAAGAAATCTGTTGAAGATGGAAATAAAGTGGAGCTTCTATTATATTCTCCCAAGCGTCCGCTGGTGGACTACTCTGTTATATTTTTATGGTTGATGTGTGTTGGAACGATAGTAACGGCTTCATATTGGAAAACGATTACTGTTGTCGAGCAAAATGATGAACCTTACAATGAACTAGCAGAAAAGGATTCTAAGGCGGGAACAGGGAAAGAAGATTCTGAGGATGAAACCTTGGTTCTTAATGTGGGAGGTGCTGTGTGTTTTGTCATAACAGCATCCACGATGCTGTTGCTACTATACTTTTTCATGTCTAGTTGGTTTGTGTGGGTGCTGATCGTGCTTTTCTGCCTTGGCGGTATTCAGGGATTGCATAATGTTATTTTGAGCCTGATTTTGAGAAAATGGAAAAGTGGTGGACAGAAGGGAATACATGTGCCTATTTTTGAAGAGGTCTCTTATCTCTCGCTTGTTGTATTACTTGTCTGCGTGGCATTTGCAATTTTTTGGTGTGTAACGCGGCAGGCATCATATTCGTGGATTGGCCAAGATATTCTTGGTATCTGCTTGATAATAACAATCTTGCAAGTCGCTCAATTACCTAACATCAAGGTTGCGACAGTACTACTATGTTGTGCATTTCTCTATGACATCTTTTGGGTGTTCTTATCACCCTTGATTTTCAAAGACAGCGTCATGATTGCGGTTGCTAGAGGGGACAATGCCGGTGGTGAAGCCCTACCAATGCTTTTGAGAGTCCCTAGATTTTTTGACCCCTGGGGTGGTCAGAATATGGTTGGCTTTGGGGACATTGTGTTTCCGGGTTTGCTCGTTTTATTTACTTTCAGATTTGACAAGGATAACAAGAAGTCTTTGCTCAATGGATACTTTCTATGGTTGGTGATTGGCTATGGAATGGGGCTTTGTTTCACGTACTTGGGTTTGTACATCATGAATGGCAATGGTCAGCCTGCACTCCTCTATCTTGTTCCATGCACACTAGGTATTACATATATTTTGGCTTTGTTAAGAGGTGAGGTGAAACAACTTTGGAGTTATGGCAATGAGCTATTTCCAACTCTAGGTGTTCCTACACAAGGCAATAGATCACCTAGAGTTTGA

Protein Analysis

541

Amino Acids

59.27

Weight (kDa)

6.74

Isoelectric Point (pI)

31.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PA PF02225 85 - 168 8.2e-13 PA domain
Peptidase_A22B PF04258 242 - 506 6.9e-87 Signal peptide peptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1021
AciI CCGC 7 cut(s) 72, 75, 563, 701, 858, 1021, 1205
AcoI YGGCCR 2 cut(s) 69, 1045
AcvI CACGTG 1 cut(s) 332
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 335
AfaI GTAC 3 cut(s) 1125, 1436, 1448
AfeI AGCGCT 1 cut(s) 417
AfiI CCNNNNNNNGG 4 cut(s) 100, 1283, 1583, 1598
AflIII ACRYGT 2 cut(s) 329, 934
AgsI TTSAA 5 cut(s) 462, 482, 518, 950, 1186
AjnI CCWGG 1 cut(s) 1277
AluBI AGCT 3 cut(s) 314, 538, 1570
AluI AGCT 3 cut(s) 314, 538, 1570
Alw21I GWGCWC 1 cut(s) 205
Alw26I GTCTC 2 cut(s) 120, 961
Alw44I GTGCAC 1 cut(s) 201
Aor51HI AGCGCT 1 cut(s) 417
AoxI GGCC 3 cut(s) 69, 251, 1045
ApaLI GTGCAC 1 cut(s) 201
ApeKI GCWGC 1 cut(s) 470
ArsI GACNNNNNNTTYG 4 cut(s) 228, 260, 1179, 1211
AspLEI GCGC 2 cut(s) 391, 418
AsuC2I CCSGG 1 cut(s) 1323
BaeGI GKGCMC 1 cut(s) 205
BalI TGGCCA 1 cut(s) 1047
BbrPI CACGTG 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 205
BbvCI CCTCAGC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 457
BccI CCATC 3 cut(s) 421, 485, 515
BceAI ACGGC 1 cut(s) 636
BcgI CGANNNNNNTGC 4 cut(s) 775, 809, 1017, 1051
BciT130I CCWGG 1 cut(s) 1279
BciVI GTATCC 1 cut(s) 1379
BcnI CCSGG 1 cut(s) 1323
BcoDI GTCTC 2 cut(s) 120, 961
BfaI CTAG 7 cut(s) 680, 816, 1212, 1263, 1502, 1583, 1614
BfoI RGCGCY 2 cut(s) 392, 419
BfuI GTATCC 1 cut(s) 1379
BisI GCNGC 4 cut(s) 72, 75, 471, 1022
BlsI GCNGC 4 cut(s) 73, 76, 472, 1023
BmcAI AGTACT 1 cut(s) 1125
Bme1390I CCNGG 2 cut(s) 1279, 1323
BmrFI CCNGG 2 cut(s) 1279, 1323
BmsI GCATC 3 cut(s) 777, 788, 1037
BplI GAGNNNNNCTC 2 cut(s) 486, 518
BpmI CTGGAG 1 cut(s) 330
Bpu10I CCTNAGC 2 cut(s) 95, 384
BpuEI CTTGAG 3 cut(s) 131, 213, 488
BpuMI CCSGG 1 cut(s) 1323
BsaAI YACGTR 2 cut(s) 332, 1434
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 961
BsaJI CCNNGG 5 cut(s) 66, 735, 853, 1277, 1278
BsaXI ACNNNNNCTCC 2 cut(s) 744, 774
Bsc4I CCNNNNNNNGG 4 cut(s) 100, 1283, 1583, 1598
Bse118I RCCGGY 1 cut(s) 1226
Bse3DI GCAATG 2 cut(s) 1468, 1570
BseBI CCWGG 1 cut(s) 1279
BseDI CCNNGG 5 cut(s) 66, 735, 853, 1277, 1278
BseGI GGATG 3 cut(s) 496, 733, 779
BseLI CCNNNNNNNGG 4 cut(s) 100, 1283, 1583, 1598
BseMI GCAATG 2 cut(s) 1468, 1570
BseMII CTCAG 2 cut(s) 109, 714
BseRI GAGGAG 3 cut(s) 32, 83, 1469
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 1 cut(s) 457
BsgI GTGCAG 1 cut(s) 1458
Bsh1236I CGCG 1 cut(s) 1021
BshFI GGCC 3 cut(s) 71, 253, 1047
BsiHKAI GWGCWC 1 cut(s) 205
BsiSI CCGG 3 cut(s) 375, 1227, 1322
BslFI GGGAC 3 cut(s) 1232, 1244, 1322
BslI CCNNNNNNNGG 4 cut(s) 100, 1283, 1583, 1598
BsmAI GTCTC 2 cut(s) 120, 961
BsmFI GGGAC 3 cut(s) 1232, 1244, 1322
BsnI GGCC 3 cut(s) 71, 253, 1047
Bso31I GGTCTC 1 cut(s) 961
Bsp1286I GDGCHC 1 cut(s) 205
Bsp1407I TGTACA 1 cut(s) 1446
Bsp143I GATC 3 cut(s) 454, 837, 1607
BspACI CCGC 7 cut(s) 72, 75, 563, 701, 858, 1021, 1205
BspANI GGCC 3 cut(s) 71, 253, 1047
BspCNI CTCAG 2 cut(s) 108, 715
BspFNI CGCG 1 cut(s) 1021
BspHI TCATGA 2 cut(s) 1197, 1452
BspTNI GGTCTC 1 cut(s) 961
BsrDI GCAATG 2 cut(s) 1468, 1570
BsrFI RCCGGY 1 cut(s) 1226
BsrGI TGTACA 1 cut(s) 1446
BssAI RCCGGY 1 cut(s) 1226
BssECI CCNNGG 5 cut(s) 66, 735, 853, 1277, 1278
BssMI GATC 3 cut(s) 454, 837, 1607
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 3 cut(s) 66, 735, 853
Bst2UI CCWGG 1 cut(s) 1279
Bst4CI ACNGT 5 cut(s) 187, 303, 352, 646, 1123
Bst6I CTCTTC 2 cut(s) 301, 945
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 365
BstAUI TGTACA 1 cut(s) 1446
BstBAI YACGTR 2 cut(s) 332, 1434
BstC8I GCNNGC 2 cut(s) 1026, 1473
BstDEI CTNAG 4 cut(s) 95, 384, 696, 723
BstENI CCTNNNNNAGG 2 cut(s) 98, 1596
BstF5I GGATG 3 cut(s) 496, 733, 779
BstFNI CGCG 1 cut(s) 1021
BstH2I RGCGCY 2 cut(s) 392, 419
BstHHI GCGC 2 cut(s) 391, 418
BstKTI GATC 3 cut(s) 457, 840, 1610
BstMAI GTCTC 2 cut(s) 120, 961
BstMBI GATC 3 cut(s) 454, 837, 1607
BstMWI GCNNNNNNNGC 4 cut(s) 177, 365, 380, 841
BstNI CCWGG 1 cut(s) 1279
BstNSI RCATGY 1 cut(s) 938
BstSCI CCNGG 2 cut(s) 1277, 1321
BstSLI GKGCMC 1 cut(s) 205
BstUI CGCG 1 cut(s) 1021
BstV1I GCAGC 1 cut(s) 457
BsuI GTATCC 1 cut(s) 1379
BsuRI GGCC 3 cut(s) 71, 253, 1047
BtgZI GCGATG 1 cut(s) 488
BtsCI GGATG 3 cut(s) 496, 733, 779
Cac8I GCNNGC 2 cut(s) 1026, 1473
CciI TCATGA 2 cut(s) 1197, 1452
CfoI GCGC 2 cut(s) 391, 418
Cfr10I RCCGGY 1 cut(s) 1226
CseI GACGC 2 cut(s) 548, 1183
Csp6I GTAC 3 cut(s) 1124, 1435, 1447
CspCI CAANNNNNGTGG 2 cut(s) 1210, 1245
CviAII CATG 7 cut(s) 142, 424, 811, 935, 1198, 1453, 1494
CviQI GTAC 3 cut(s) 1124, 1435, 1447
DdeI CTNAG 4 cut(s) 95, 384, 696, 723
DpnI GATC 3 cut(s) 456, 839, 1609
DpnII GATC 3 cut(s) 454, 837, 1607
DraIII CACNNNGTG 1 cut(s) 335
EaeI YGGCCR 2 cut(s) 69, 1045
Eam1104I CTCTTC 2 cut(s) 301, 945
EarI CTCTTC 2 cut(s) 301, 945
Eco130I CCWWGG 3 cut(s) 66, 735, 853
Eco31I GGTCTC 1 cut(s) 961
Eco47III AGCGCT 1 cut(s) 417
Eco72I CACGTG 1 cut(s) 332
EcoNI CCTNNNNNAGG 2 cut(s) 98, 1596
EcoRII CCWGG 1 cut(s) 1277
EcoT14I CCWWGG 3 cut(s) 66, 735, 853
ErhI CCWWGG 3 cut(s) 66, 735, 853
FaeI CATG 7 cut(s) 145, 427, 814, 938, 1201, 1456, 1497
FalI AAGNNNNNCTT 4 cut(s) 522, 554, 1041, 1073
FaqI GGGAC 3 cut(s) 1232, 1244, 1322
FatI CATG 7 cut(s) 141, 423, 810, 934, 1197, 1452, 1493
FauI CCCGC 1 cut(s) 694
Fnu4HI GCNGC 4 cut(s) 72, 75, 471, 1022
FokI GGATG 3 cut(s) 503, 740, 766
Fsp4HI GCNGC 4 cut(s) 72, 75, 471, 1022
FspBI CTAG 7 cut(s) 680, 816, 1212, 1263, 1502, 1583, 1614
GlaI GCGC 2 cut(s) 390, 417
GluI GCNGC 4 cut(s) 72, 75, 471, 1022
GsuI CTGGAG 1 cut(s) 330
HaeII RGCGCY 2 cut(s) 392, 419
HaeIII GGCC 3 cut(s) 71, 253, 1047
HapII CCGG 3 cut(s) 375, 1227, 1322
HgaI GACGC 2 cut(s) 548, 1183
HhaI GCGC 2 cut(s) 391, 418
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 7 cut(s) 145, 427, 814, 938, 1201, 1456, 1497
Hin6I GCGC 2 cut(s) 389, 416
HinP1I GCGC 2 cut(s) 389, 416
HinfI GANTC 3 cut(s) 692, 719, 1257
HpaII CCGG 3 cut(s) 375, 1227, 1322
Hpy166II GTNNAC 4 cut(s) 203, 327, 571, 920
Hpy188I TCNGA 4 cut(s) 490, 724, 1290, 1349
Hpy188III TCNNGA 5 cut(s) 309, 437, 505, 1198, 1453
Hpy8I GTNNAC 4 cut(s) 203, 327, 571, 920
Hpy99I CGWCG 3 cut(s) 10, 19, 22
HpyAV CCTTC 3 cut(s) 170, 234, 919
HpyCH4III ACNGT 5 cut(s) 187, 303, 352, 646, 1123
HpyCH4IV ACGT 2 cut(s) 331, 1433
HpyF10VI GCNNNNNNNGC 4 cut(s) 177, 365, 380, 841
HpyF3I CTNAG 4 cut(s) 95, 384, 696, 723
HpySE526I ACGT 2 cut(s) 331, 1433
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 7 cut(s) 145, 427, 814, 938, 1201, 1456, 1497
HspAI GCGC 2 cut(s) 389, 416
Kzo9I GATC 3 cut(s) 454, 837, 1607
LmnI GCTCC 3 cut(s) 45, 311, 535
Lsp1109I GCAGC 1 cut(s) 457
LweI GCATC 3 cut(s) 777, 788, 1037
MaeI CTAG 7 cut(s) 680, 816, 1212, 1263, 1502, 1583, 1614
MaeII ACGT 2 cut(s) 331, 1433
MaeIII GTNAC 4 cut(s) 262, 341, 616, 1015
MalI GATC 3 cut(s) 456, 839, 1609
MboI GATC 3 cut(s) 454, 837, 1607
MboII GAAGA 5 cut(s) 17, 288, 530, 728, 962
MhlI GDGCHC 1 cut(s) 205
MlsI TGGCCA 1 cut(s) 1047
MluCI AATT 3 cut(s) 206, 1002, 1097
MluNI TGGCCA 1 cut(s) 1047
MlyI GAGTC 1 cut(s) 1266
MmeI TCCRAC 3 cut(s) 468, 586, 1601
Mox20I TGGCCA 1 cut(s) 1047
MscI TGGCCA 1 cut(s) 1047
MseI TTAA 5 cut(s) 153, 165, 354, 744, 1529
MslI CAYNNNNRTG 1 cut(s) 1036
Msp20I TGGCCA 1 cut(s) 1047
MspA1I CMGCKG 1 cut(s) 565
MspI CCGG 3 cut(s) 375, 1227, 1322
MspR9I CCNGG 2 cut(s) 1279, 1323
MvaI CCWGG 1 cut(s) 1279
MvnI CGCG 1 cut(s) 1021
MwoI GCNNNNNNNGC 4 cut(s) 177, 365, 380, 841
NciI CCSGG 1 cut(s) 1323
NdeII GATC 3 cut(s) 454, 837, 1607
NlaIII CATG 7 cut(s) 145, 427, 814, 938, 1201, 1456, 1497
NmuCI GTSAC 2 cut(s) 262, 341
NspI RCATGY 1 cut(s) 938
PagI TCATGA 2 cut(s) 1197, 1452
PasI CCCWGGG 1 cut(s) 1278
PciI ACATGT 1 cut(s) 934
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PfeI GAWTC 2 cut(s) 692, 719
PflFI GACNNNGTC 1 cut(s) 1193
PkrI GCNGC 4 cut(s) 73, 76, 472, 1023
PleI GAGTC 1 cut(s) 1265
PmaCI CACGTG 1 cut(s) 332
PmlI CACGTG 1 cut(s) 332
PpsI GAGTC 1 cut(s) 1265
Ppu21I YACGTR 2 cut(s) 332, 1434
PscI ACATGT 1 cut(s) 934
Psp6I CCWGG 1 cut(s) 1277
PspCI CACGTG 1 cut(s) 332
PspGI CCWGG 1 cut(s) 1277
PsyI GACNNNGTC 1 cut(s) 1193
RsaI GTAC 3 cut(s) 1125, 1436, 1448
RsaNI GTAC 3 cut(s) 1124, 1435, 1447
RseI CAYNNNNRTG 1 cut(s) 1036
SaqAI TTAA 5 cut(s) 153, 165, 354, 744, 1529
SatI GCNGC 4 cut(s) 72, 75, 471, 1022
Sau3AI GATC 3 cut(s) 454, 837, 1607
ScaI AGTACT 1 cut(s) 1125
SchI GAGTC 1 cut(s) 1266
ScrFI CCNGG 2 cut(s) 1279, 1323
SduI GDGCHC 1 cut(s) 205
SfaNI GCATC 3 cut(s) 777, 788, 1037
SmiMI CAYNNNNRTG 1 cut(s) 1036
SmlI CTYRAG 3 cut(s) 146, 228, 503
SmoI CTYRAG 3 cut(s) 146, 228, 503
Sse9I AATT 3 cut(s) 206, 1002, 1097
SsiI CCGC 7 cut(s) 72, 75, 563, 701, 858, 1021, 1205
SspI AATATT 1 cut(s) 465
SspMI CTAG 7 cut(s) 680, 816, 1212, 1263, 1502, 1583, 1614
StyD4I CCNGG 2 cut(s) 1277, 1321
StyI CCWWGG 3 cut(s) 66, 735, 853
TaaI ACNGT 5 cut(s) 187, 303, 352, 646, 1123
TaiI ACGT 2 cut(s) 334, 1436
TaqI TCGA 2 cut(s) 234, 651
TasI AATT 3 cut(s) 206, 1002, 1097
TatI WGTACW 2 cut(s) 1123, 1446
TauI GCSGC 3 cut(s) 74, 77, 1024
TfiI GAWTC 2 cut(s) 692, 719
Tru1I TTAA 5 cut(s) 153, 165, 354, 744, 1529
Tru9I TTAA 5 cut(s) 153, 165, 354, 744, 1529
TseFI GTSAC 2 cut(s) 262, 341
TseI GCWGC 1 cut(s) 470
Tsp45I GTSAC 2 cut(s) 262, 341
TspDTI ATGAA 7 cut(s) 423, 615, 678, 690, 744, 799, 1469
TspGWI ACGGA 1 cut(s) 20
Tth111I GACNNNGTC 1 cut(s) 1193
VneI GTGCAC 1 cut(s) 201
XagI CCTNNNNNAGG 2 cut(s) 98, 1596
XceI RCATGY 1 cut(s) 938
XcmI CCANNNNNNNNNTGG 2 cut(s) 562, 1055
XspI CTAG 7 cut(s) 680, 816, 1212, 1263, 1502, 1583, 1614
ZrmI AGTACT 1 cut(s) 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.